Wall clock time and date at job start Mon Mar 30 2020 06:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 S 1.75497 * 124.70743 * 2 1 4 4 C 1.70450 * 92.45175 * 179.80635 * 3 2 1 5 5 C 1.36089 * 110.80749 * 0.34616 * 4 3 2 6 6 C 1.47112 * 123.46833 * 179.86167 * 5 4 3 7 7 O 1.21667 * 119.99699 * 131.83804 * 6 5 4 8 8 N 1.34771 * 119.99965 * 311.55540 * 6 5 4 9 9 C 1.36974 * 120.00216 * 185.00854 * 8 6 5 10 10 H 1.07999 * 120.00215 * 133.35269 * 9 8 6 11 11 C 1.38970 * 120.00055 * 313.35596 * 9 8 6 12 12 N 1.31420 * 119.99999 * 168.20275 * 11 9 8 13 13 Si 1.86806 * 119.99916 * 348.20493 * 11 9 8 14 14 H 1.48500 * 109.46920 * 95.76118 * 13 11 9 15 15 H 1.48502 * 109.46577 * 215.76044 * 13 11 9 16 16 H 1.48496 * 109.47061 * 335.76034 * 13 11 9 17 17 C 1.46502 * 119.99933 * 5.01528 * 8 6 5 18 18 C 1.52999 * 117.49840 * 183.96738 * 17 8 6 19 19 C 1.53003 * 60.00101 * 252.51293 * 18 17 8 20 20 C 1.32760 * 124.69904 * 180.02562 * 2 1 3 21 21 C 1.50704 * 123.45668 * 359.97438 * 20 2 1 22 22 H 1.09002 * 109.46858 * 270.00686 * 1 2 3 23 23 H 1.09001 * 109.46598 * 29.99379 * 1 2 3 24 24 H 1.08992 * 109.47373 * 149.99838 * 1 2 3 25 25 H 1.08004 * 124.59435 * 180.23947 * 4 3 2 26 26 H 0.96999 * 120.00204 * 180.02562 * 12 11 9 27 27 H 1.09001 * 115.55210 * 329.67731 * 17 8 6 28 28 H 1.09001 * 117.49818 * 0.02562 * 18 17 8 29 29 H 1.09004 * 117.50179 * 145.01839 * 18 17 8 30 30 H 1.08998 * 117.49647 * 252.51166 * 19 18 17 31 31 H 1.08999 * 117.51709 * 107.48372 * 19 18 17 32 32 H 1.09008 * 109.46694 * 270.00113 * 21 20 2 33 33 H 1.08997 * 109.47220 * 29.99865 * 21 20 2 34 34 H 1.09001 * 109.47329 * 150.00309 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5063 1.4427 0.0000 4 6 3.9477 0.5330 0.0058 5 6 3.6777 -0.8008 -0.0001 6 6 4.7194 -1.8395 -0.0001 7 8 4.6511 -2.7696 0.7813 8 7 5.7464 -1.7638 -0.8695 9 6 6.6603 -2.7817 -0.9404 10 1 6.9594 -3.1729 -1.9015 11 6 7.2024 -3.3111 0.2246 12 7 7.8934 -4.4281 0.1793 13 14 6.9489 -2.4351 1.8549 14 1 5.7890 -3.0335 2.5632 15 1 8.1681 -2.5812 2.6900 16 1 6.6882 -0.9943 1.6073 17 6 5.8855 -0.5928 -1.7388 18 6 7.0174 -0.6075 -2.7681 19 6 7.1151 0.2951 -1.5365 20 6 2.2628 -1.0915 -0.0005 21 6 1.7021 -2.4903 -0.0006 22 1 -0.3633 0.0001 1.0277 23 1 -0.3632 0.8901 -0.5138 24 1 -0.3634 -0.8899 -0.5138 25 1 4.9408 0.9576 0.0114 26 1 8.2715 -4.7978 0.9924 27 1 4.9532 -0.1043 -2.0223 28 1 7.6583 -1.4886 -2.7988 29 1 6.8299 -0.1289 -3.7293 30 1 6.9918 1.3675 -1.6874 31 1 7.8203 0.0081 -0.7565 32 1 1.5672 -2.8277 1.0272 33 1 0.7406 -2.4963 -0.5140 34 1 2.3928 -3.1587 -0.5147 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271391315.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:24 Heat of formation + Delta-G solvation = 10.783469 kcal Electronic energy + Delta-G solvation = -18458.287934 eV Core-core repulsion = 15676.283116 eV Total energy + Delta-G solvation = -2782.004818 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.30424 -38.74294 -37.97235 -34.99279 -33.80771 -32.97383 -30.33926 -27.85511 -26.11289 -24.95702 -23.38098 -22.67457 -21.33965 -19.67514 -18.80070 -18.24050 -17.64943 -17.35906 -16.24730 -15.69565 -15.46642 -15.29185 -15.00507 -14.88077 -14.62631 -13.92265 -13.68492 -13.59432 -13.40000 -13.09785 -12.87946 -12.67898 -12.62315 -12.41141 -12.24715 -12.09611 -11.77824 -11.63800 -11.28652 -10.92981 -10.51700 -9.53362 -9.46148 -9.14354 -8.48238 -6.31280 -0.08457 0.66816 0.91432 1.08148 1.20642 1.32274 1.45952 2.02637 2.38429 2.63392 2.87615 3.15225 3.78673 3.88339 3.99656 4.13199 4.18937 4.25413 4.37770 4.47450 4.63359 4.68833 4.80789 4.86644 4.89525 4.94699 5.04211 5.09414 5.17047 5.37462 5.40404 5.59158 5.62928 5.81404 6.66067 6.78421 7.21608 7.74915 8.58237 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.021972 B = 0.008473 C = 0.007238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.031989 B = 3303.674549 C = 3867.447522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.200 4.200 3 S 0.234 5.766 4 C -0.232 4.232 5 C -0.153 4.153 6 C 0.510 3.490 7 O -0.583 6.583 8 N -0.442 5.442 9 C -0.332 4.332 10 H 0.075 0.925 11 C 0.043 3.957 12 N -0.910 5.910 13 Si 0.978 3.022 14 H -0.287 1.287 15 H -0.309 1.309 16 H -0.275 1.275 17 C 0.041 3.959 18 C -0.164 4.164 19 C -0.184 4.184 20 C -0.097 4.097 21 C -0.083 4.083 22 H 0.085 0.915 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.171 0.829 26 H 0.274 0.726 27 H 0.139 0.861 28 H 0.078 0.922 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.571 16.226 -3.378 21.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.317 4.317 3 S 0.502 5.498 4 C -0.370 4.370 5 C -0.172 4.172 6 C 0.301 3.699 7 O -0.470 6.470 8 N -0.161 5.161 9 C -0.460 4.460 10 H 0.093 0.907 11 C -0.161 4.161 12 N -0.548 5.548 13 Si 0.811 3.189 14 H -0.216 1.216 15 H -0.240 1.240 16 H -0.201 1.201 17 C -0.063 4.063 18 C -0.202 4.202 19 C -0.222 4.222 20 C -0.108 4.108 21 C -0.142 4.142 22 H 0.103 0.897 23 H 0.108 0.892 24 H 0.104 0.896 25 H 0.188 0.812 26 H 0.083 0.917 27 H 0.157 0.843 28 H 0.097 0.903 29 H 0.148 0.852 30 H 0.152 0.848 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -13.774 17.199 -2.966 22.234 hybrid contribution 1.258 -2.150 0.937 2.661 sum -12.515 15.049 -2.029 19.678 Atomic orbital electron populations 1.20480 0.84853 1.04521 1.03843 1.24525 1.01928 0.95219 1.10027 1.82278 0.91028 1.06341 1.70156 1.25754 1.06237 0.96784 1.08210 1.20231 0.94087 0.93195 1.09638 1.18432 0.81741 0.86204 0.83546 1.90505 1.77342 1.37631 1.41560 1.43194 1.21741 1.16747 1.34415 1.18669 1.20668 1.12401 0.94215 0.90688 1.25988 0.92987 0.95201 1.01918 1.69761 1.35542 1.19061 1.30398 0.85170 0.74427 0.78839 0.80432 1.21552 1.23978 1.20064 1.22190 0.94971 0.90434 0.98713 1.23190 1.00625 1.01889 0.94447 1.23353 1.00376 0.98253 1.00259 1.19743 0.89811 0.97553 1.03695 1.20381 1.00809 0.90901 1.02096 0.89671 0.89164 0.89648 0.81170 0.91654 0.84325 0.90328 0.85161 0.84782 0.91411 0.91792 0.88288 0.94568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.24 10.04 71.24 0.72 -0.52 16 2 C -0.20 -4.95 6.44 24.51 0.16 -4.79 16 3 S 0.23 5.14 23.00 -56.49 -1.30 3.84 16 4 C -0.23 -7.30 8.64 67.32 0.58 -6.72 16 5 C -0.15 -6.10 5.10 -19.87 -0.10 -6.20 16 6 C 0.51 26.01 5.07 86.57 0.44 26.44 16 7 O -0.58 -34.74 11.51 -4.24 -0.05 -34.79 16 8 N -0.44 -22.22 2.47 -617.12 -1.52 -23.74 16 9 C -0.33 -19.57 8.53 84.07 0.72 -18.85 16 10 H 0.08 4.67 7.24 -2.91 -0.02 4.64 16 11 C 0.04 2.68 5.05 84.93 0.43 3.11 16 12 N -0.91 -58.51 13.96 21.67 0.30 -58.21 16 13 Si 0.98 55.22 24.39 68.60 1.67 56.90 16 14 H -0.29 -17.46 6.36 99.48 0.63 -16.83 16 15 H -0.31 -16.73 7.11 99.48 0.71 -16.03 16 16 H -0.28 -14.73 6.98 99.48 0.69 -14.03 16 17 C 0.04 1.55 4.68 44.99 0.21 1.76 16 18 C -0.16 -5.52 9.81 30.59 0.30 -5.22 16 19 C -0.18 -6.00 9.96 30.60 0.30 -5.70 16 20 C -0.10 -3.27 6.00 -19.46 -0.12 -3.38 16 21 C -0.08 -2.73 9.33 71.24 0.66 -2.07 16 22 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.08 1.23 6.66 -2.39 -0.02 1.22 16 25 H 0.17 5.15 6.91 -2.91 -0.02 5.13 16 26 H 0.27 16.67 8.31 -92.71 -0.77 15.90 16 27 H 0.14 4.49 6.31 -2.39 -0.02 4.47 16 28 H 0.08 3.20 6.61 -2.39 -0.02 3.19 16 29 H 0.13 3.25 8.14 -2.38 -0.02 3.23 16 30 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 31 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.10 2.37 6.64 -2.39 -0.02 2.36 16 34 H 0.04 1.43 7.51 -2.39 -0.02 1.41 16 Total: -1.00 -77.92 289.45 4.43 -73.49 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: 1.03 Total: 4.65 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: 4.30 Total: -22.14 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -1.22 Total: -81.95 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -0.05 Total: -34.79 kcal Atomic # 14 Polarization: 55.22 SS G_CDS: 1.67 Total: 56.90 kcal Atomic # 16 Polarization: 5.14 SS G_CDS: -1.30 Total: 3.84 kcal Total: -77.92 4.43 -73.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271391315.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.275 kcal (2) G-P(sol) polarization free energy of solvation -77.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds