Wall clock time and date at job start Mon Mar 30 2020 06:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39742 * 120.09251 * 359.74072 * 3 2 1 5 5 C 1.37765 * 119.94858 * 179.67953 * 4 3 2 6 6 C 1.38897 * 120.11718 * 0.57716 * 5 4 3 7 7 O 1.35813 * 119.90729 * 179.72313 * 6 5 4 8 8 C 1.42897 * 117.00215 * 359.72409 * 7 6 5 9 9 C 1.53006 * 109.46881 * 180.02562 * 8 7 6 10 10 O 1.42895 * 109.47036 * 65.00230 * 9 8 7 11 11 C 1.42901 * 113.99948 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47372 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99889 * 0.02562 * 12 11 10 14 14 C 1.37868 * 120.00134 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00542 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 120.00126 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47131 * 59.99948 * 16 14 12 18 18 H 1.48494 * 109.47324 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.46884 * 300.00288 * 16 14 12 20 20 C 1.39131 * 120.17743 * 359.44510 * 6 5 4 21 21 F 1.35103 * 119.97014 * 180.27601 * 20 6 5 22 22 C 1.37929 * 120.05569 * 0.25346 * 20 6 5 23 23 H 1.08003 * 120.02272 * 359.97438 * 4 3 2 24 24 H 1.07999 * 119.94551 * 180.31598 * 5 4 3 25 25 H 1.08992 * 109.47198 * 60.00323 * 8 7 6 26 26 H 1.08997 * 109.46749 * 300.00085 * 8 7 6 27 27 H 1.09001 * 109.47002 * 184.99708 * 9 8 7 28 28 H 1.08993 * 109.46955 * 305.00145 * 9 8 7 29 29 H 1.08995 * 109.47392 * 299.99575 * 11 10 9 30 30 H 1.09003 * 109.47182 * 59.99587 * 11 10 9 31 31 H 0.96998 * 120.00821 * 179.97438 * 15 14 12 32 32 H 1.08000 * 120.06169 * 180.02562 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 -1.2081 0.0055 5 6 4.6468 -1.2041 -0.0012 6 6 5.3402 -0.0006 -0.0013 7 8 6.6984 -0.0016 -0.0022 8 6 7.3462 -1.2752 0.0031 9 6 8.8632 -1.0758 0.0018 10 8 9.2616 -0.4440 1.2200 11 6 10.6678 -0.2111 1.3211 12 6 10.9732 0.4559 2.6375 13 1 10.1734 0.6792 3.3281 14 6 12.2737 0.7801 2.9608 15 7 13.2477 0.5078 2.1202 16 14 12.6523 1.6062 4.5929 17 1 12.2146 0.7265 5.7063 18 1 14.1136 1.8483 4.6979 19 1 11.9295 2.9011 4.6717 20 6 4.6472 1.2059 -0.0063 21 9 5.3260 2.3740 -0.0120 22 6 3.2680 1.2103 -0.0059 23 1 2.7315 -2.1448 0.0101 24 1 5.1886 -2.1383 -0.0022 25 1 7.0524 -1.8360 -0.8842 26 1 7.0535 -1.8280 0.8957 27 1 9.3569 -2.0438 -0.0837 28 1 9.1463 -0.4476 -0.8428 29 1 11.1986 -1.1613 1.2632 30 1 10.9889 0.4348 0.5038 31 1 14.1626 0.7362 2.3474 32 1 2.7300 2.1467 -0.0101 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292594227.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:35 Heat of formation + Delta-G solvation = -76.693221 kcal Electronic energy + Delta-G solvation = -18417.194943 eV Core-core repulsion = 15065.183674 eV Total energy + Delta-G solvation = -3352.011268 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.89334 -40.36710 -38.35296 -36.76797 -36.24081 -32.82161 -31.27106 -31.17169 -29.59048 -27.00438 -24.33003 -23.57578 -22.40619 -21.82836 -19.49240 -18.48964 -17.12877 -16.57763 -16.46628 -16.23598 -15.69683 -15.31955 -14.85751 -14.54896 -14.36627 -14.18279 -14.11982 -13.96002 -13.66015 -13.09615 -12.60029 -12.44932 -12.34099 -11.93993 -11.77980 -11.36156 -11.20800 -10.84881 -10.83062 -10.65814 -10.09160 -9.39892 -9.17810 -8.92073 -8.46670 -8.25445 -6.14101 -4.16065 0.38857 0.73563 2.34273 2.53721 2.86592 3.31392 3.34070 3.38056 3.41478 3.48101 3.97038 4.26249 4.33578 4.53472 4.61767 4.66155 4.97272 5.05642 5.21995 5.22656 5.31776 5.57002 5.63838 5.72412 5.76867 5.80465 5.97076 6.21524 6.99796 7.08618 7.17591 7.35666 7.75235 8.08994 8.47295 8.95805 9.48871 10.97364 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.031928 B = 0.003377 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.751728 B = 8288.407291 C = 8683.021209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.263 3.737 3 C -0.055 4.055 4 C -0.034 4.034 5 C -0.192 4.192 6 C 0.142 3.858 7 O -0.283 6.283 8 C 0.060 3.940 9 C 0.061 3.939 10 O -0.390 6.390 11 C 0.195 3.805 12 C -0.516 4.516 13 H 0.067 0.933 14 C 0.057 3.943 15 N -0.899 5.899 16 Si 0.909 3.091 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.068 3.932 21 F -0.121 7.121 22 C -0.067 4.067 23 H 0.141 0.859 24 H 0.150 0.850 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.006 0.994 30 H 0.008 0.992 31 H 0.265 0.735 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.958 -4.621 -7.002 18.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.052 4.052 3 C -0.059 4.059 4 C -0.055 4.055 5 C -0.211 4.211 6 C 0.093 3.907 7 O -0.194 6.194 8 C -0.014 4.014 9 C -0.017 4.017 10 O -0.310 6.310 11 C 0.121 3.879 12 C -0.555 4.555 13 H 0.085 0.915 14 C -0.144 4.144 15 N -0.538 5.538 16 Si 0.736 3.264 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.199 1.199 20 C 0.048 3.952 21 F -0.100 7.100 22 C -0.089 4.089 23 H 0.159 0.841 24 H 0.168 0.832 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.024 0.976 30 H 0.025 0.975 31 H 0.075 0.925 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -18.440 -4.345 -6.875 20.154 hybrid contribution 1.127 0.323 0.574 1.306 sum -17.313 -4.023 -6.301 18.858 Atomic orbital electron populations 1.81275 1.11943 1.07047 1.09466 1.25453 0.92315 0.93917 0.93480 1.15516 0.84529 0.93864 1.11943 1.20982 0.93261 0.96973 0.94243 1.21138 0.94583 0.97241 1.08090 1.19460 0.84548 0.93031 0.93671 1.86334 1.13972 1.33087 1.85997 1.23184 0.93246 0.83146 1.01862 1.22286 0.90452 0.98055 0.90868 1.87924 1.28406 1.79817 1.34861 1.20238 0.74752 0.95272 0.97612 1.21003 0.93053 1.39175 1.02230 0.91528 1.24941 0.95719 0.95898 0.97874 1.69942 1.00202 1.47588 1.36084 0.86380 0.77045 0.79977 0.83006 1.19992 1.21137 1.19920 1.16670 0.88887 0.80157 1.09478 1.91583 1.79674 1.44606 1.94092 1.20917 0.91306 0.98707 0.97928 0.84071 0.83230 0.90577 0.90544 0.91764 0.93054 0.97582 0.97462 0.92540 0.83143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.98 18.54 41.84 0.78 -4.21 16 2 C 0.26 2.51 15.33 -22.47 -0.34 2.17 16 3 C -0.05 -0.45 5.74 -106.84 -0.61 -1.06 16 4 C -0.03 -0.24 9.75 -39.19 -0.38 -0.62 16 5 C -0.19 -1.57 9.01 -39.51 -0.36 -1.93 16 6 C 0.14 1.67 6.70 -39.01 -0.26 1.41 16 7 O -0.28 -4.20 9.95 -24.01 -0.24 -4.44 16 8 C 0.06 0.74 5.12 37.16 0.19 0.93 16 9 C 0.06 1.01 6.32 37.16 0.23 1.24 16 10 O -0.39 -9.06 10.29 -40.09 -0.41 -9.48 16 11 C 0.20 5.22 5.69 36.01 0.20 5.43 16 12 C -0.52 -15.07 9.43 -34.44 -0.32 -15.39 16 13 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -26.56 13.29 55.43 0.74 -25.83 16 16 Si 0.91 21.69 29.54 -169.99 -5.02 16.67 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.07 0.79 7.30 -39.36 -0.29 0.51 16 21 F -0.12 -1.72 17.10 2.25 0.04 -1.68 16 22 C -0.07 -0.59 9.73 -39.13 -0.38 -0.97 16 23 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 24 H 0.15 0.90 6.27 -52.49 -0.33 0.58 16 25 H 0.08 0.63 7.64 -51.93 -0.40 0.24 16 26 H 0.08 0.87 7.66 -51.93 -0.40 0.47 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 301.98 15.07 4.55 4.55 Total: -1.00 -33.18 301.98 -5.19 -38.38 By element: Atomic # 1 Polarization: -4.00 SS G_CDS: -3.21 Total: -7.21 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -2.42 Total: -6.75 kcal Atomic # 7 Polarization: -31.55 SS G_CDS: 1.51 Total: -30.04 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.65 Total: -13.92 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.18 -5.19 -38.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292594227.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.316 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds