Wall clock time and date at job start Mon Mar 30 2020 06:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39742 * 120.09251 * 359.74072 * 3 2 1 5 5 C 1.37765 * 119.94858 * 179.67953 * 4 3 2 6 6 C 1.38897 * 120.11718 * 0.57716 * 5 4 3 7 7 O 1.35813 * 119.90729 * 179.72313 * 6 5 4 8 8 C 1.42897 * 117.00215 * 359.72409 * 7 6 5 9 9 C 1.53006 * 109.46881 * 180.02562 * 8 7 6 10 10 O 1.42895 * 109.47036 * 65.00230 * 9 8 7 11 11 C 1.42901 * 113.99948 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47372 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99889 * 0.02562 * 12 11 10 14 14 C 1.37868 * 120.00134 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00542 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 120.00126 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47131 * 59.99948 * 16 14 12 18 18 H 1.48494 * 109.47324 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.46884 * 300.00288 * 16 14 12 20 20 C 1.39131 * 120.17743 * 359.44510 * 6 5 4 21 21 F 1.35103 * 119.97014 * 180.27601 * 20 6 5 22 22 C 1.37929 * 120.05569 * 0.25346 * 20 6 5 23 23 H 1.08003 * 120.02272 * 359.97438 * 4 3 2 24 24 H 1.07999 * 119.94551 * 180.31598 * 5 4 3 25 25 H 1.08992 * 109.47198 * 60.00323 * 8 7 6 26 26 H 1.08997 * 109.46749 * 300.00085 * 8 7 6 27 27 H 1.09001 * 109.47002 * 184.99708 * 9 8 7 28 28 H 1.08993 * 109.46955 * 305.00145 * 9 8 7 29 29 H 1.08995 * 109.47392 * 299.99575 * 11 10 9 30 30 H 1.09003 * 109.47182 * 59.99587 * 11 10 9 31 31 H 0.96998 * 120.00821 * 179.97438 * 15 14 12 32 32 H 1.08000 * 120.06169 * 180.02562 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 -1.2081 0.0055 5 6 4.6468 -1.2041 -0.0012 6 6 5.3402 -0.0006 -0.0013 7 8 6.6984 -0.0016 -0.0022 8 6 7.3462 -1.2752 0.0031 9 6 8.8632 -1.0758 0.0018 10 8 9.2616 -0.4440 1.2200 11 6 10.6678 -0.2111 1.3211 12 6 10.9732 0.4559 2.6375 13 1 10.1734 0.6792 3.3281 14 6 12.2737 0.7801 2.9608 15 7 13.2477 0.5078 2.1202 16 14 12.6523 1.6062 4.5929 17 1 12.2146 0.7265 5.7063 18 1 14.1136 1.8483 4.6979 19 1 11.9295 2.9011 4.6717 20 6 4.6472 1.2059 -0.0063 21 9 5.3260 2.3740 -0.0120 22 6 3.2680 1.2103 -0.0059 23 1 2.7315 -2.1448 0.0101 24 1 5.1886 -2.1383 -0.0022 25 1 7.0524 -1.8360 -0.8842 26 1 7.0535 -1.8280 0.8957 27 1 9.3569 -2.0438 -0.0837 28 1 9.1463 -0.4476 -0.8428 29 1 11.1986 -1.1613 1.2632 30 1 10.9889 0.4348 0.5038 31 1 14.1626 0.7362 2.3474 32 1 2.7300 2.1467 -0.0101 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292594227.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:35 Heat of formation + Delta-G solvation = -97.942084 kcal Electronic energy + Delta-G solvation = -18418.116363 eV Core-core repulsion = 15065.183674 eV Total energy + Delta-G solvation = -3352.932688 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.090 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.84400 -41.20158 -39.28369 -38.32028 -37.16401 -34.94881 -32.22243 -31.95807 -30.71670 -28.97521 -25.28757 -24.53792 -24.28597 -22.87351 -20.26769 -19.38147 -18.67056 -17.89018 -17.78814 -17.11805 -17.00740 -16.54510 -16.40280 -15.76474 -15.66756 -15.41991 -14.95153 -14.91108 -14.48885 -14.46427 -13.74126 -13.58052 -13.32109 -13.20011 -13.12757 -12.84889 -12.67889 -12.47877 -12.19113 -11.95671 -11.82500 -11.29228 -10.88312 -10.25260 -10.08510 -9.29787 -8.32254 -6.44387 -0.34959 0.04986 1.40515 1.44997 1.53337 1.57579 1.78087 2.00493 2.34835 2.69778 2.71905 3.01706 3.12101 3.23139 3.65837 3.87169 3.97078 4.08567 4.17286 4.34232 4.48736 4.56590 4.62084 4.73492 4.87050 4.94439 5.02104 5.11852 5.18341 5.46251 5.54427 5.95741 6.24075 6.42221 6.52450 6.80838 7.27410 8.79642 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.031928 B = 0.003377 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.751728 B = 8288.407291 C = 8683.021209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.289 3.711 3 C -0.051 4.051 4 C -0.014 4.014 5 C -0.180 4.180 6 C 0.122 3.878 7 O -0.324 6.324 8 C 0.064 3.936 9 C 0.045 3.955 10 O -0.410 6.410 11 C 0.209 3.791 12 C -0.552 4.552 13 H 0.059 0.941 14 C 0.008 3.992 15 N -0.929 5.929 16 Si 0.981 3.019 17 H -0.263 1.263 18 H -0.274 1.274 19 H -0.269 1.269 20 C 0.035 3.965 21 F -0.146 7.146 22 C -0.055 4.055 23 H 0.177 0.823 24 H 0.178 0.822 25 H 0.126 0.874 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.045 0.955 29 H -0.005 1.005 30 H -0.016 1.016 31 H 0.271 0.729 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.136 -5.934 -6.514 20.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.026 4.026 3 C -0.055 4.055 4 C -0.034 4.034 5 C -0.199 4.199 6 C 0.073 3.927 7 O -0.237 6.237 8 C -0.009 4.009 9 C -0.031 4.031 10 O -0.330 6.330 11 C 0.134 3.866 12 C -0.589 4.589 13 H 0.078 0.922 14 C -0.191 4.191 15 N -0.568 5.568 16 Si 0.803 3.197 17 H -0.188 1.188 18 H -0.199 1.199 19 H -0.194 1.194 20 C 0.016 3.984 21 F -0.125 7.125 22 C -0.077 4.077 23 H 0.194 0.806 24 H 0.195 0.805 25 H 0.143 0.857 26 H 0.107 0.893 27 H 0.104 0.896 28 H 0.063 0.937 29 H 0.013 0.987 30 H 0.002 0.998 31 H 0.080 0.920 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -19.646 -5.674 -6.406 21.429 hybrid contribution 1.407 0.675 0.328 1.595 sum -18.239 -4.998 -6.077 19.864 Atomic orbital electron populations 1.81315 1.13110 1.08321 1.10907 1.25445 0.92172 0.92710 0.92266 1.15544 0.83774 0.94238 1.11985 1.21353 0.92794 0.97761 0.91513 1.21416 0.94996 0.96824 1.06616 1.19745 0.83521 0.94297 0.95096 1.86253 1.15955 1.34468 1.87021 1.23259 0.89938 0.82958 1.04779 1.22736 0.94051 0.98349 0.87990 1.87861 1.25940 1.80811 1.38407 1.19828 0.76837 0.93905 0.95999 1.21372 0.93624 1.40569 1.03351 0.92232 1.25926 0.95233 0.96046 1.01891 1.70043 1.00746 1.48020 1.38029 0.85272 0.77346 0.78928 0.78118 1.18801 1.19881 1.19353 1.17051 0.89864 0.79633 1.11901 1.91510 1.80354 1.46048 1.94605 1.21004 0.90219 0.99837 0.96595 0.80562 0.80458 0.85685 0.89326 0.89561 0.93678 0.98713 0.99822 0.91985 0.81748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.13 18.54 19.00 0.35 -9.78 16 2 C 0.29 4.83 15.33 88.33 1.35 6.18 16 3 C -0.05 -0.70 5.74 -21.30 -0.12 -0.82 16 4 C -0.01 -0.14 9.75 22.52 0.22 0.08 16 5 C -0.18 -2.34 9.01 22.32 0.20 -2.13 16 6 C 0.12 2.71 6.70 22.64 0.15 2.86 16 7 O -0.32 -9.52 9.95 -86.81 -0.86 -10.38 16 8 C 0.06 1.47 5.12 71.98 0.37 1.84 16 9 C 0.05 1.49 6.32 71.98 0.45 1.95 16 10 O -0.41 -19.50 10.29 -144.34 -1.49 -20.98 16 11 C 0.21 11.59 5.69 71.24 0.41 12.00 16 12 C -0.55 -32.92 9.43 25.60 0.24 -32.68 16 13 H 0.06 3.54 7.81 -2.91 -0.02 3.51 16 14 C 0.01 0.45 5.46 84.65 0.46 0.91 16 15 N -0.93 -55.49 13.29 21.44 0.28 -55.21 16 16 Si 0.98 44.34 29.54 68.60 2.03 46.37 16 17 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 20 C 0.04 0.82 7.30 22.41 0.16 0.98 16 21 F -0.15 -4.37 17.10 44.97 0.77 -3.60 16 22 C -0.06 -0.91 9.73 22.56 0.22 -0.69 16 23 H 0.18 0.60 8.06 -2.91 -0.02 0.57 16 24 H 0.18 1.28 6.27 -2.91 -0.02 1.26 16 25 H 0.13 1.60 7.64 -2.39 -0.02 1.58 16 26 H 0.09 1.78 7.66 -2.39 -0.02 1.76 16 27 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 30 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 31 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 32 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -74.67 301.98 6.35 -68.32 By element: Atomic # 1 Polarization: -6.36 SS G_CDS: 1.15 Total: -5.21 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 4.12 Total: -9.53 kcal Atomic # 7 Polarization: -65.62 SS G_CDS: 0.64 Total: -64.99 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -2.35 Total: -31.37 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.77 Total: -3.60 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -74.67 6.35 -68.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292594227.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.620 kcal (2) G-P(sol) polarization free energy of solvation -74.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds