Wall clock time and date at job start Mon Mar 30 2020 06:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00177 * 2 1 4 4 H 1.48506 * 109.46856 * 269.99690 * 3 2 1 5 5 H 1.48497 * 109.47307 * 29.99696 * 3 2 1 6 6 H 1.48499 * 109.47027 * 150.00207 * 3 2 1 7 7 C 1.37884 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99789 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99869 * 0.02562 * 7 2 1 10 10 H 1.09004 * 110.81757 * 56.66768 * 9 7 2 11 11 C 1.54882 * 110.75918 * 293.32699 * 9 7 2 12 12 C 1.54268 * 104.19992 * 203.74378 * 11 9 7 13 13 C 1.53876 * 106.59607 * 23.60931 * 12 11 9 14 14 H 1.08998 * 110.07695 * 240.69742 * 13 12 11 15 15 N 1.46504 * 110.03592 * 119.28350 * 13 12 11 16 16 C 1.34780 * 119.99915 * 87.83027 * 15 13 12 17 17 O 1.21702 * 119.99862 * 0.02562 * 16 15 13 18 18 C 1.46574 * 119.99794 * 180.02562 * 16 15 13 19 19 C 1.36658 * 125.45583 * 179.72063 * 18 16 15 20 20 C 1.37474 * 113.29769 * 179.83752 * 19 18 16 21 21 C 1.33822 * 115.09913 * 0.45298 * 20 19 18 22 22 S 1.70617 * 110.95300 * 359.74848 * 21 20 19 23 23 C 1.54268 * 106.59992 * 0.02562 * 13 12 11 24 24 H 0.97007 * 119.99881 * 0.02562 * 1 2 3 25 25 H 1.09003 * 110.48391 * 322.42126 * 11 9 7 26 26 H 1.09004 * 110.48801 * 85.06667 * 11 9 7 27 27 H 1.08994 * 110.03288 * 264.32894 * 12 11 9 28 28 H 1.09000 * 110.07311 * 142.91218 * 12 11 9 29 29 H 0.97000 * 120.00204 * 267.83795 * 15 13 12 30 30 H 1.08005 * 123.34980 * 0.02562 * 19 18 16 31 31 H 1.07990 * 122.45045 * 180.17770 * 20 19 18 32 32 H 1.07992 * 124.52257 * 179.76556 * 21 20 19 33 33 H 1.08999 * 110.49069 * 217.71506 * 23 13 12 34 34 H 1.08999 * 110.60474 * 95.12333 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.5727 -2.5548 -0.8510 11 6 0.4792 -2.6875 1.3302 12 6 0.2959 -4.2147 1.4483 13 6 1.4096 -4.8577 0.6032 14 1 0.9739 -5.4600 -0.1939 15 7 2.2652 -5.6913 1.4512 16 6 1.9459 -6.9827 1.6681 17 8 0.9470 -7.4562 1.1592 18 6 2.8017 -7.8166 2.5170 19 6 2.5819 -9.1320 2.8152 20 6 3.5460 -9.6727 3.6325 21 6 4.5172 -8.8287 4.0000 22 16 4.2715 -7.2829 3.3210 23 6 2.2311 -3.6988 0.0016 24 1 -0.4850 0.8401 -0.0004 25 1 1.0642 -2.3076 2.1678 26 1 -0.4893 -2.1895 1.2830 27 1 -0.6809 -4.5045 1.0613 28 1 0.3916 -4.5235 2.4892 29 1 3.0615 -5.3140 1.8567 30 1 1.7366 -9.6919 2.4431 31 1 3.5191 -10.7021 3.9578 32 1 5.3461 -9.0910 4.6407 33 1 2.5410 -3.9386 -1.0155 34 1 3.1000 -3.4816 0.6229 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295491996.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:27 Heat of formation + Delta-G solvation = -19.682214 kcal Electronic energy + Delta-G solvation = -17266.993265 eV Core-core repulsion = 14483.667356 eV Total energy + Delta-G solvation = -2783.325910 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.72288 -37.84541 -36.81439 -33.70281 -32.06050 -29.98506 -28.16722 -27.14878 -24.98211 -23.77648 -21.56305 -19.95673 -19.24048 -19.15229 -18.30617 -16.62950 -15.98259 -15.73900 -15.08480 -14.79199 -14.50329 -14.17005 -13.61684 -12.97157 -12.94126 -12.67612 -12.45942 -12.35919 -11.80110 -11.15567 -11.14893 -11.03211 -10.93039 -10.59326 -10.32344 -10.00535 -9.77728 -9.56585 -9.23711 -9.08287 -8.83806 -8.79492 -8.62271 -8.37654 -6.01821 -4.05033 0.38396 1.31334 1.71750 2.27552 3.29874 3.30118 3.36154 3.37262 3.40097 4.43163 4.74492 4.89105 5.13399 5.29247 5.30087 5.52204 5.64506 5.77656 5.79644 6.00056 6.14050 6.27396 6.31630 6.57348 6.63884 6.72088 6.86500 6.89214 7.23912 7.29817 7.68433 7.70105 7.85422 8.00969 8.33854 8.42218 8.97423 9.59152 11.07841 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.036316 B = 0.004096 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.818777 B = 6834.868248 C = 7346.858791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.052 3.948 10 H 0.036 0.964 11 C -0.103 4.103 12 C -0.135 4.135 13 C 0.138 3.862 14 H 0.084 0.916 15 N -0.712 5.712 16 C 0.583 3.417 17 O -0.534 6.534 18 C -0.257 4.257 19 C -0.064 4.064 20 C -0.149 4.149 21 C -0.237 4.237 22 S 0.203 5.797 23 C -0.122 4.122 24 H 0.260 0.740 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.395 0.605 30 H 0.153 0.847 31 H 0.144 0.856 32 H 0.167 0.833 33 H 0.055 0.945 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.424 -15.537 7.779 19.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.033 3.967 10 H 0.054 0.946 11 C -0.141 4.141 12 C -0.173 4.173 13 C 0.035 3.965 14 H 0.102 0.898 15 N -0.362 5.362 16 C 0.369 3.631 17 O -0.413 6.413 18 C -0.378 4.378 19 C -0.097 4.097 20 C -0.181 4.181 21 C -0.375 4.375 22 S 0.470 5.530 23 C -0.160 4.160 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.229 0.771 30 H 0.171 0.829 31 H 0.161 0.839 32 H 0.185 0.815 33 H 0.073 0.927 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.347 -14.352 7.479 18.210 hybrid contribution 0.144 -0.393 0.342 0.541 sum 8.491 -14.746 7.821 18.727 Atomic orbital electron populations 1.69959 1.05895 1.26502 1.50280 1.24981 0.94825 0.99028 0.95043 0.86640 0.79865 0.83671 0.78070 1.20729 1.21298 1.19956 1.21087 0.92749 0.90396 1.51064 0.92624 1.19563 0.92338 0.90907 0.93868 0.94552 1.22349 1.01531 0.90323 0.99903 1.22649 0.97441 0.98880 0.98372 1.21951 0.91267 0.91233 0.92062 0.89819 1.46266 1.28702 1.10078 1.51130 1.16997 0.84290 0.81692 0.80158 1.90813 1.26635 1.73222 1.50638 1.24854 1.02971 0.99670 1.10286 1.20809 0.99665 0.92817 0.96443 1.20043 0.95059 1.01669 1.01305 1.25319 1.05323 0.98935 1.07937 1.83149 1.18568 1.10183 1.41096 1.22785 0.99092 0.95159 0.98974 0.93032 0.93418 0.91489 0.92368 0.93133 0.77087 0.82946 0.83860 0.81514 0.92657 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.23 12.41 55.43 0.69 -24.54 16 2 C 0.06 1.72 5.36 -17.82 -0.10 1.62 16 3 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.51 -13.71 8.49 -34.44 -0.29 -14.01 16 8 H 0.06 1.45 7.77 -52.49 -0.41 1.04 16 9 C 0.05 1.26 2.73 -89.77 -0.25 1.01 16 10 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 11 C -0.10 -2.34 5.75 -25.07 -0.14 -2.49 16 12 C -0.13 -2.64 6.59 -25.61 -0.17 -2.81 16 13 C 0.14 2.54 3.25 -66.81 -0.22 2.32 16 14 H 0.08 1.61 7.56 -51.93 -0.39 1.22 16 15 N -0.71 -11.31 4.98 -54.05 -0.27 -11.58 16 16 C 0.58 9.57 7.78 -12.90 -0.10 9.47 16 17 O -0.53 -10.52 16.49 5.19 0.09 -10.43 16 18 C -0.26 -3.38 6.45 -36.79 -0.24 -3.62 16 19 C -0.06 -0.75 10.01 -40.43 -0.40 -1.15 16 20 C -0.15 -1.36 10.15 -41.41 -0.42 -1.78 16 21 C -0.24 -2.01 10.92 29.18 0.32 -1.69 16 22 S 0.20 2.01 22.16 -107.50 -2.38 -0.37 16 23 C -0.12 -2.40 5.94 -25.05 -0.15 -2.55 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.05 1.10 8.04 -51.93 -0.42 0.69 16 26 H 0.07 1.67 7.63 -51.93 -0.40 1.27 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.05 0.94 7.92 -51.93 -0.41 0.53 16 29 H 0.39 5.44 7.47 -40.82 -0.31 5.14 16 30 H 0.15 1.72 8.06 -52.48 -0.42 1.29 16 31 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 1.15 7.63 -51.93 -0.40 0.75 16 LS Contribution 301.27 15.07 4.54 4.54 Total: -1.00 -30.11 301.27 -8.91 -39.02 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -4.40 Total: 3.15 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -2.16 Total: -15.67 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.42 Total: -36.12 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.38 Total: -0.37 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.11 -8.91 -39.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295491996.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.341 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds