Wall clock time and date at job start Mon Mar 30 2020 06:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00177 * 2 1 4 4 H 1.48506 * 109.46856 * 269.99690 * 3 2 1 5 5 H 1.48497 * 109.47307 * 29.99696 * 3 2 1 6 6 H 1.48499 * 109.47027 * 150.00207 * 3 2 1 7 7 C 1.37884 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99789 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99869 * 0.02562 * 7 2 1 10 10 H 1.09004 * 110.81757 * 56.66768 * 9 7 2 11 11 C 1.54882 * 110.75918 * 293.32699 * 9 7 2 12 12 C 1.54268 * 104.19992 * 203.74378 * 11 9 7 13 13 C 1.53876 * 106.59607 * 23.60931 * 12 11 9 14 14 H 1.08998 * 110.07695 * 240.69742 * 13 12 11 15 15 N 1.46504 * 110.03592 * 119.28350 * 13 12 11 16 16 C 1.34780 * 119.99915 * 87.83027 * 15 13 12 17 17 O 1.21702 * 119.99862 * 0.02562 * 16 15 13 18 18 C 1.46574 * 119.99794 * 180.02562 * 16 15 13 19 19 C 1.36658 * 125.45583 * 179.72063 * 18 16 15 20 20 C 1.37474 * 113.29769 * 179.83752 * 19 18 16 21 21 C 1.33822 * 115.09913 * 0.45298 * 20 19 18 22 22 S 1.70617 * 110.95300 * 359.74848 * 21 20 19 23 23 C 1.54268 * 106.59992 * 0.02562 * 13 12 11 24 24 H 0.97007 * 119.99881 * 0.02562 * 1 2 3 25 25 H 1.09003 * 110.48391 * 322.42126 * 11 9 7 26 26 H 1.09004 * 110.48801 * 85.06667 * 11 9 7 27 27 H 1.08994 * 110.03288 * 264.32894 * 12 11 9 28 28 H 1.09000 * 110.07311 * 142.91218 * 12 11 9 29 29 H 0.97000 * 120.00204 * 267.83795 * 15 13 12 30 30 H 1.08005 * 123.34980 * 0.02562 * 19 18 16 31 31 H 1.07990 * 122.45045 * 180.17770 * 20 19 18 32 32 H 1.07992 * 124.52257 * 179.76556 * 21 20 19 33 33 H 1.08999 * 110.49069 * 217.71506 * 23 13 12 34 34 H 1.08999 * 110.60474 * 95.12333 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.5727 -2.5548 -0.8510 11 6 0.4792 -2.6875 1.3302 12 6 0.2959 -4.2147 1.4483 13 6 1.4096 -4.8577 0.6032 14 1 0.9739 -5.4600 -0.1939 15 7 2.2652 -5.6913 1.4512 16 6 1.9459 -6.9827 1.6681 17 8 0.9470 -7.4562 1.1592 18 6 2.8017 -7.8166 2.5170 19 6 2.5819 -9.1320 2.8152 20 6 3.5460 -9.6727 3.6325 21 6 4.5172 -8.8287 4.0000 22 16 4.2715 -7.2829 3.3210 23 6 2.2311 -3.6988 0.0016 24 1 -0.4850 0.8401 -0.0004 25 1 1.0642 -2.3076 2.1678 26 1 -0.4893 -2.1895 1.2830 27 1 -0.6809 -4.5045 1.0613 28 1 0.3916 -4.5235 2.4892 29 1 3.0615 -5.3140 1.8567 30 1 1.7366 -9.6919 2.4431 31 1 3.5191 -10.7021 3.9578 32 1 5.3461 -9.0910 4.6407 33 1 2.5410 -3.9386 -1.0155 34 1 3.1000 -3.4816 0.6229 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295491996.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:26 Heat of formation + Delta-G solvation = -37.672714 kcal Electronic energy + Delta-G solvation = -17267.773392 eV Core-core repulsion = 14483.667356 eV Total energy + Delta-G solvation = -2784.106036 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.03141 -39.01586 -38.11976 -35.34587 -33.89307 -30.99384 -29.94960 -28.70834 -26.22198 -25.39014 -22.71422 -21.49340 -20.92335 -20.13938 -19.46095 -18.50061 -17.18501 -16.89361 -16.61071 -16.32868 -15.91149 -15.70823 -14.84540 -14.44071 -14.05179 -13.86381 -13.72988 -13.62701 -13.24709 -13.00122 -12.79587 -12.63242 -12.41230 -12.13205 -11.90214 -11.70066 -11.42859 -11.17947 -11.04282 -10.83219 -10.45512 -10.20662 -9.80274 -9.51966 -8.09485 -6.19386 -0.47604 0.50588 0.96314 1.43761 1.44475 1.45368 1.55123 2.10917 2.17044 2.46514 3.22011 3.71893 3.96774 3.99914 4.15841 4.16569 4.37774 4.56673 4.66214 4.72010 4.87987 4.98357 5.03729 5.05096 5.14153 5.21625 5.25233 5.38143 5.38621 5.59793 5.66097 5.90593 5.98657 6.37965 6.45165 6.91390 7.09683 7.48434 8.99807 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.036316 B = 0.004096 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.818777 B = 6834.868248 C = 7346.858791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.041 3.959 10 H 0.003 0.997 11 C -0.092 4.092 12 C -0.124 4.124 13 C 0.150 3.850 14 H 0.075 0.925 15 N -0.706 5.706 16 C 0.584 3.416 17 O -0.577 6.577 18 C -0.303 4.303 19 C -0.060 4.060 20 C -0.159 4.159 21 C -0.217 4.217 22 S 0.229 5.771 23 C -0.108 4.108 24 H 0.259 0.741 25 H 0.042 0.958 26 H 0.036 0.964 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.407 0.593 30 H 0.147 0.853 31 H 0.172 0.828 32 H 0.202 0.798 33 H 0.063 0.937 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.045 -16.607 9.296 22.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.079 0.921 9 C 0.022 3.978 10 H 0.022 0.978 11 C -0.130 4.130 12 C -0.163 4.163 13 C 0.045 3.955 14 H 0.093 0.907 15 N -0.356 5.356 16 C 0.372 3.628 17 O -0.459 6.459 18 C -0.423 4.423 19 C -0.094 4.094 20 C -0.189 4.189 21 C -0.354 4.354 22 S 0.496 5.504 23 C -0.146 4.146 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.243 0.757 30 H 0.165 0.835 31 H 0.189 0.811 32 H 0.219 0.781 33 H 0.082 0.918 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.011 -15.422 9.010 20.982 hybrid contribution -0.630 -0.130 -0.086 0.649 sum 10.381 -15.552 8.924 20.718 Atomic orbital electron populations 1.70100 1.07403 1.27178 1.51418 1.25787 0.95592 1.02537 0.94876 0.85613 0.78864 0.79404 0.78115 1.20366 1.21348 1.18773 1.21481 0.93180 0.91536 1.50428 0.92136 1.19540 0.92936 0.92206 0.93137 0.97834 1.22124 0.99560 0.92317 0.99036 1.22524 0.97932 0.96498 0.99366 1.21580 0.90966 0.90954 0.91954 0.90698 1.46053 1.28743 1.09971 1.50839 1.17421 0.84057 0.81606 0.79755 1.90780 1.28676 1.73959 1.52530 1.24587 1.05096 1.00130 1.12461 1.21040 0.99954 0.92359 0.96087 1.20252 0.94455 1.03170 1.01000 1.25807 1.05434 0.97705 1.06498 1.83043 1.16216 1.10935 1.40207 1.22592 0.98452 0.93548 1.00009 0.93185 0.93932 0.94472 0.92787 0.91955 0.75674 0.83545 0.81093 0.78075 0.91830 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.65 12.41 21.45 0.27 -53.39 16 2 C 0.01 0.59 5.36 84.66 0.45 1.04 16 3 Si 0.95 42.91 29.54 68.60 2.03 44.94 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.53 -28.28 8.49 25.60 0.22 -28.06 16 8 H 0.06 3.11 7.77 -2.91 -0.02 3.09 16 9 C 0.04 2.01 2.73 -10.24 -0.03 1.98 16 10 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 11 C -0.09 -4.30 5.75 31.67 0.18 -4.12 16 12 C -0.12 -4.93 6.59 31.32 0.21 -4.72 16 13 C 0.15 5.50 3.25 45.72 0.15 5.65 16 14 H 0.07 2.92 7.56 -2.39 -0.02 2.90 16 15 N -0.71 -21.86 4.98 -443.14 -2.21 -24.07 16 16 C 0.58 18.97 7.78 86.42 0.67 19.64 16 17 O -0.58 -23.13 16.49 -4.35 -0.07 -23.20 16 18 C -0.30 -7.56 6.45 24.08 0.16 -7.41 16 19 C -0.06 -1.30 10.01 21.72 0.22 -1.08 16 20 C -0.16 -2.36 10.15 21.08 0.21 -2.14 16 21 C -0.22 -2.76 10.92 66.82 0.73 -2.03 16 22 S 0.23 3.88 22.16 -56.49 -1.25 2.63 16 23 C -0.11 -4.21 5.94 31.68 0.19 -4.02 16 24 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 25 H 0.04 1.99 8.04 -2.39 -0.02 1.97 16 26 H 0.04 1.92 7.63 -2.39 -0.02 1.91 16 27 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.06 2.31 7.92 -2.39 -0.02 2.29 16 29 H 0.41 10.57 7.47 -92.71 -0.69 9.88 16 30 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 31 H 0.17 1.56 8.06 -2.92 -0.02 1.54 16 32 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 33 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.07 2.70 7.63 -2.39 -0.02 2.68 16 Total: -1.00 -66.25 301.27 2.53 -63.71 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.41 Total: 14.64 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: 3.36 Total: -25.27 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: -1.94 Total: -77.45 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.07 Total: -23.20 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -1.25 Total: 2.63 kcal Total: -66.25 2.53 -63.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295491996.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.041 kcal (2) G-P(sol) polarization free energy of solvation -66.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds