Wall clock time and date at job start Mon Mar 30 2020 06:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00180 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99899 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.43608 * 61.08798 * 9 7 2 11 11 C 1.54262 * 110.48866 * 298.54531 * 9 7 2 12 12 C 1.53882 * 106.59796 * 217.71436 * 11 9 7 13 13 C 1.54261 * 106.59772 * 359.97438 * 12 11 9 14 14 H 1.08997 * 110.49086 * 264.93389 * 13 12 11 15 15 N 1.46500 * 110.48571 * 142.42173 * 13 12 11 16 16 C 1.34775 * 120.00126 * 86.45371 * 15 13 12 17 17 O 1.21637 * 119.99899 * 359.97438 * 16 15 13 18 18 C 1.47192 * 120.00217 * 180.02562 * 16 15 13 19 19 C 1.44426 * 123.46188 * 180.02562 * 18 16 15 20 20 C 1.32775 * 113.08433 * 179.97438 * 19 18 16 21 21 S 1.75506 * 110.57449 * 359.97438 * 20 19 18 22 22 C 1.36010 * 123.45996 * 359.69596 * 18 16 15 23 23 C 1.54891 * 104.19872 * 23.61319 * 13 12 11 24 24 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 25 25 H 1.08999 * 110.03224 * 336.99585 * 11 9 7 26 26 H 1.08997 * 110.03443 * 98.42863 * 11 9 7 27 27 H 1.08999 * 110.02750 * 119.28583 * 12 11 9 28 28 H 1.08995 * 110.03079 * 240.71231 * 12 11 9 29 29 H 0.97004 * 120.00184 * 266.45880 * 15 13 12 30 30 H 1.07996 * 123.45466 * 359.97438 * 19 18 16 31 31 H 1.07990 * 124.71107 * 179.97438 * 20 19 18 32 32 H 1.08000 * 124.58949 * 0.02562 * 22 18 16 33 33 H 1.08994 * 110.75619 * 203.74434 * 23 13 12 34 34 H 1.08995 * 110.75895 * 80.36837 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 1 0.6334 -2.5820 -0.8938 11 6 0.3826 -2.6212 1.2696 12 6 0.4439 -4.0961 1.7040 13 6 1.3469 -4.8189 0.6834 14 1 0.7449 -5.2787 -0.1003 15 7 2.1718 -5.8277 1.3528 16 6 1.6886 -7.0702 1.5509 17 8 0.5673 -7.3538 1.1742 18 6 2.5172 -8.0836 2.2239 19 6 2.0751 -9.4356 2.4739 20 6 2.9873 -10.1754 3.0933 21 16 4.4390 -9.2374 3.3979 22 6 3.7802 -7.8448 2.6686 23 6 2.2333 -3.6928 0.0958 24 1 -0.4850 0.8401 0.0004 25 1 0.7816 -1.9829 2.0579 26 1 -0.6466 -2.3402 1.0462 27 1 0.8726 -4.1735 2.7032 28 1 -0.5556 -4.5309 1.6915 29 1 3.0659 -5.6015 1.6536 30 1 1.1025 -9.8067 2.1866 31 1 2.8543 -11.2104 3.3711 32 1 4.2951 -6.9001 2.5741 33 1 2.6037 -3.9682 -0.8915 34 1 3.0589 -3.4603 0.7684 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295552832.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:11 Heat of formation + Delta-G solvation = -21.834299 kcal Electronic energy + Delta-G solvation = -17261.764043 eV Core-core repulsion = 14478.344812 eV Total energy + Delta-G solvation = -2783.419231 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.81403 -37.48267 -36.47858 -33.76746 -32.06620 -29.97859 -28.14956 -27.03677 -24.98051 -23.74214 -21.55493 -20.01687 -19.33076 -18.78096 -18.08814 -16.99588 -16.43295 -15.37504 -14.83184 -14.61237 -14.41637 -14.27074 -13.38630 -13.19323 -12.90570 -12.60691 -12.50494 -12.38112 -11.80695 -11.32986 -11.18485 -10.96646 -10.86565 -10.60939 -10.31069 -9.98548 -9.69201 -9.54518 -9.26702 -9.22638 -8.75348 -8.72591 -8.50079 -8.38434 -6.01006 -4.04671 0.60908 1.33933 1.70781 1.92490 3.31130 3.36565 3.37739 3.43765 3.48613 4.43356 4.56920 4.96260 5.08300 5.20600 5.30823 5.55207 5.62822 5.65411 5.84092 5.89876 6.09311 6.31804 6.34728 6.55294 6.64971 6.73065 6.90863 6.92846 7.27658 7.32738 7.72099 7.77660 7.88802 8.01275 8.41454 8.45468 8.97560 9.59363 11.08439 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.040481 B = 0.003742 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.521998 B = 7480.309042 C = 7950.860292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.051 3.949 10 H 0.031 0.969 11 C -0.094 4.094 12 C -0.134 4.134 13 C 0.136 3.864 14 H 0.086 0.914 15 N -0.712 5.712 16 C 0.570 3.430 17 O -0.540 6.540 18 C -0.148 4.148 19 C -0.085 4.085 20 C -0.238 4.238 21 S 0.174 5.826 22 C -0.212 4.212 23 C -0.120 4.120 24 H 0.260 0.740 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.395 0.605 30 H 0.154 0.846 31 H 0.168 0.832 32 H 0.171 0.829 33 H 0.053 0.947 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.430 -17.401 6.951 20.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.073 0.927 9 C 0.033 3.967 10 H 0.049 0.951 11 C -0.133 4.133 12 C -0.173 4.173 13 C 0.033 3.967 14 H 0.104 0.896 15 N -0.361 5.361 16 C 0.355 3.645 17 O -0.419 6.419 18 C -0.166 4.166 19 C -0.114 4.114 20 C -0.373 4.373 21 S 0.439 5.561 22 C -0.351 4.351 23 C -0.158 4.158 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.229 0.771 30 H 0.172 0.828 31 H 0.186 0.814 32 H 0.188 0.812 33 H 0.072 0.928 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.828 -17.790 7.353 21.178 hybrid contribution -0.495 1.472 -0.453 1.618 sum 8.334 -16.318 6.901 19.579 Atomic orbital electron populations 1.69965 1.05869 1.26598 1.50132 1.24984 0.94837 0.99009 0.95101 0.86700 0.79618 0.83353 0.78541 1.20323 1.21349 1.20338 1.21080 0.92706 0.90427 1.51282 0.92691 1.19390 0.92009 0.91155 0.94190 0.95054 1.22055 1.01142 0.90607 0.99449 1.22639 0.98479 0.98501 0.97702 1.22129 0.92716 0.87255 0.94620 0.89603 1.46112 1.19044 1.10930 1.60050 1.17620 0.86047 0.81850 0.78966 1.90780 1.19477 1.80299 1.51315 1.20496 0.94566 0.95805 1.05761 1.21186 1.00750 0.91199 0.98268 1.25494 0.97990 1.04574 1.09236 1.83007 1.16911 1.00423 1.55766 1.25700 0.99357 1.04986 1.05021 1.22863 0.98648 0.95326 0.98935 0.92978 0.92885 0.92435 0.93089 0.92918 0.77072 0.82849 0.81406 0.81178 0.92795 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.36 12.35 55.43 0.68 -24.67 16 2 C 0.06 1.72 5.33 -17.82 -0.09 1.62 16 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -13.85 8.40 -34.44 -0.29 -14.14 16 8 H 0.05 1.44 7.78 -52.48 -0.41 1.03 16 9 C 0.05 1.25 2.79 -90.13 -0.25 1.00 16 10 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 11 C -0.09 -2.19 5.40 -25.61 -0.14 -2.33 16 12 C -0.13 -2.66 6.53 -25.61 -0.17 -2.83 16 13 C 0.14 2.51 3.15 -66.27 -0.21 2.30 16 14 H 0.09 1.70 7.66 -51.93 -0.40 1.30 16 15 N -0.71 -10.95 5.09 -53.35 -0.27 -11.23 16 16 C 0.57 9.26 7.79 -12.63 -0.10 9.16 16 17 O -0.54 -10.74 16.50 5.24 0.09 -10.65 16 18 C -0.15 -1.90 5.98 -104.63 -0.63 -2.53 16 19 C -0.08 -0.97 10.10 -39.02 -0.39 -1.36 16 20 C -0.24 -2.07 11.12 28.86 0.32 -1.75 16 21 S 0.17 1.38 23.02 -107.50 -2.48 -1.09 16 22 C -0.21 -2.12 10.38 29.93 0.31 -1.81 16 23 C -0.12 -2.35 5.89 -24.75 -0.15 -2.49 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.05 1.31 7.83 -51.93 -0.41 0.90 16 26 H 0.06 1.44 7.94 -51.93 -0.41 1.03 16 27 H 0.05 0.95 8.04 -51.93 -0.42 0.54 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.39 4.96 7.04 -40.82 -0.29 4.67 16 30 H 0.15 1.73 8.06 -52.49 -0.42 1.30 16 31 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.17 1.36 7.01 -52.49 -0.37 0.99 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 LS Contribution 300.77 15.07 4.53 4.53 Total: -1.00 -30.69 300.77 -8.60 -39.29 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -4.36 Total: 2.99 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -1.78 Total: -15.16 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.41 Total: -35.90 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.48 Total: -1.09 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.69 -8.60 -39.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295552832.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.457 kcal (2) G-P(sol) polarization free energy of solvation -30.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds