Wall clock time and date at job start Mon Mar 30 2020 06:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00180 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99899 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.43608 * 61.08798 * 9 7 2 11 11 C 1.54262 * 110.48866 * 298.54531 * 9 7 2 12 12 C 1.53882 * 106.59796 * 217.71436 * 11 9 7 13 13 C 1.54261 * 106.59772 * 359.97438 * 12 11 9 14 14 H 1.08997 * 110.49086 * 264.93389 * 13 12 11 15 15 N 1.46500 * 110.48571 * 142.42173 * 13 12 11 16 16 C 1.34775 * 120.00126 * 86.45371 * 15 13 12 17 17 O 1.21637 * 119.99899 * 359.97438 * 16 15 13 18 18 C 1.47192 * 120.00217 * 180.02562 * 16 15 13 19 19 C 1.44426 * 123.46188 * 180.02562 * 18 16 15 20 20 C 1.32775 * 113.08433 * 179.97438 * 19 18 16 21 21 S 1.75506 * 110.57449 * 359.97438 * 20 19 18 22 22 C 1.36010 * 123.45996 * 359.69596 * 18 16 15 23 23 C 1.54891 * 104.19872 * 23.61319 * 13 12 11 24 24 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 25 25 H 1.08999 * 110.03224 * 336.99585 * 11 9 7 26 26 H 1.08997 * 110.03443 * 98.42863 * 11 9 7 27 27 H 1.08999 * 110.02750 * 119.28583 * 12 11 9 28 28 H 1.08995 * 110.03079 * 240.71231 * 12 11 9 29 29 H 0.97004 * 120.00184 * 266.45880 * 15 13 12 30 30 H 1.07996 * 123.45466 * 359.97438 * 19 18 16 31 31 H 1.07990 * 124.71107 * 179.97438 * 20 19 18 32 32 H 1.08000 * 124.58949 * 0.02562 * 22 18 16 33 33 H 1.08994 * 110.75619 * 203.74434 * 23 13 12 34 34 H 1.08995 * 110.75895 * 80.36837 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 1 0.6334 -2.5820 -0.8938 11 6 0.3826 -2.6212 1.2696 12 6 0.4439 -4.0961 1.7040 13 6 1.3469 -4.8189 0.6834 14 1 0.7449 -5.2787 -0.1003 15 7 2.1718 -5.8277 1.3528 16 6 1.6886 -7.0702 1.5509 17 8 0.5673 -7.3538 1.1742 18 6 2.5172 -8.0836 2.2239 19 6 2.0751 -9.4356 2.4739 20 6 2.9873 -10.1754 3.0933 21 16 4.4390 -9.2374 3.3979 22 6 3.7802 -7.8448 2.6686 23 6 2.2333 -3.6928 0.0958 24 1 -0.4850 0.8401 0.0004 25 1 0.7816 -1.9829 2.0579 26 1 -0.6466 -2.3402 1.0462 27 1 0.8726 -4.1735 2.7032 28 1 -0.5556 -4.5309 1.6915 29 1 3.0659 -5.6015 1.6536 30 1 1.1025 -9.8067 2.1866 31 1 2.8543 -11.2104 3.3711 32 1 4.2951 -6.9001 2.5741 33 1 2.6037 -3.9682 -0.8915 34 1 3.0589 -3.4603 0.7684 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295552832.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:10 Heat of formation + Delta-G solvation = -40.719635 kcal Electronic energy + Delta-G solvation = -17262.582972 eV Core-core repulsion = 14478.344812 eV Total energy + Delta-G solvation = -2784.238161 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.07486 -38.92003 -37.60864 -35.38717 -33.89387 -30.93712 -29.95183 -28.63142 -26.21386 -25.40524 -22.64399 -21.58683 -20.90259 -20.06649 -18.99797 -18.33794 -17.99335 -16.87436 -16.59008 -16.16065 -15.76182 -15.59958 -14.60143 -14.27257 -14.09676 -13.93555 -13.76738 -13.65649 -13.34160 -13.06706 -12.76197 -12.55398 -12.44028 -12.18513 -12.01321 -11.70537 -11.43335 -11.15605 -10.90166 -10.76606 -10.47072 -10.12902 -9.94872 -9.31549 -8.09902 -6.20590 -0.19495 0.65289 0.97586 1.02237 1.44320 1.45475 1.52955 2.20010 2.35285 2.46024 3.21235 3.78084 3.90055 3.99565 4.06369 4.17781 4.34465 4.47049 4.67112 4.76509 4.84472 4.85854 4.98881 5.03562 5.12566 5.15815 5.29075 5.31152 5.41081 5.60807 5.66715 5.91572 5.97273 6.37278 6.57636 6.90739 7.22795 7.47369 8.99020 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.040481 B = 0.003742 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.521998 B = 7480.309042 C = 7950.860292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.009 3.991 3 Si 0.955 3.045 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.530 4.530 8 H 0.062 0.938 9 C 0.039 3.961 10 H -0.002 1.002 11 C -0.082 4.082 12 C -0.124 4.124 13 C 0.150 3.850 14 H 0.069 0.931 15 N -0.702 5.702 16 C 0.569 3.431 17 O -0.588 6.588 18 C -0.183 4.183 19 C -0.114 4.114 20 C -0.232 4.232 21 S 0.248 5.752 22 C -0.210 4.210 23 C -0.103 4.103 24 H 0.259 0.741 25 H 0.036 0.964 26 H 0.027 0.973 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.412 0.588 30 H 0.142 0.858 31 H 0.196 0.804 32 H 0.191 0.809 33 H 0.064 0.936 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.537 -18.530 8.310 23.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.190 4.190 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.193 1.193 7 C -0.568 4.568 8 H 0.080 0.920 9 C 0.020 3.980 10 H 0.016 0.984 11 C -0.121 4.121 12 C -0.163 4.163 13 C 0.045 3.955 14 H 0.087 0.913 15 N -0.352 5.352 16 C 0.357 3.643 17 O -0.469 6.469 18 C -0.201 4.201 19 C -0.142 4.142 20 C -0.367 4.367 21 S 0.514 5.486 22 C -0.348 4.348 23 C -0.141 4.141 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.249 0.751 30 H 0.159 0.841 31 H 0.213 0.787 32 H 0.208 0.792 33 H 0.083 0.917 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 11.987 -18.935 8.728 24.049 hybrid contribution -1.390 1.747 -0.834 2.383 sum 10.597 -17.188 7.894 21.680 Atomic orbital electron populations 1.70116 1.07438 1.27240 1.51298 1.25816 0.95611 1.02630 0.94897 0.85651 0.78315 0.78948 0.78975 1.19538 1.21525 1.19293 1.21492 0.93226 0.91509 1.50611 0.92002 1.19389 0.92845 0.92676 0.93049 0.98406 1.21823 0.98991 0.92689 0.98602 1.22500 0.98884 0.96005 0.98862 1.21698 0.92439 0.87488 0.93892 0.91282 1.45850 1.19406 1.10229 1.59724 1.18160 0.85787 0.82239 0.78158 1.90749 1.21706 1.81088 1.53404 1.20240 0.95658 0.95648 1.08561 1.21170 1.01355 0.91343 1.00366 1.25866 0.97792 1.05746 1.07249 1.82852 1.14786 0.97971 1.53034 1.26057 0.98351 1.07009 1.03408 1.22657 0.97934 0.93424 1.00125 0.93201 0.94486 0.95398 0.91476 0.93511 0.75084 0.84074 0.78684 0.79216 0.91742 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.12 12.35 21.45 0.26 -53.86 16 2 C 0.01 0.50 5.33 84.66 0.45 0.96 16 3 Si 0.96 43.08 29.54 68.60 2.03 45.11 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.53 -28.53 8.40 25.60 0.22 -28.32 16 8 H 0.06 3.17 7.78 -2.91 -0.02 3.15 16 9 C 0.04 1.96 2.79 -10.47 -0.03 1.93 16 10 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 11 C -0.08 -3.97 5.40 31.32 0.17 -3.80 16 12 C -0.12 -4.95 6.53 31.32 0.20 -4.74 16 13 C 0.15 5.50 3.15 46.07 0.15 5.65 16 14 H 0.07 2.80 7.66 -2.39 -0.02 2.79 16 15 N -0.70 -20.76 5.09 -440.94 -2.24 -23.00 16 16 C 0.57 18.33 7.79 86.60 0.67 19.01 16 17 O -0.59 -24.04 16.50 -4.15 -0.07 -24.11 16 18 C -0.18 -4.45 5.98 -19.87 -0.12 -4.57 16 19 C -0.11 -2.48 10.10 22.67 0.23 -2.25 16 20 C -0.23 -3.35 11.12 66.64 0.74 -2.61 16 21 S 0.25 2.93 23.02 -56.49 -1.30 1.62 16 22 C -0.21 -3.53 10.38 67.30 0.70 -2.84 16 23 C -0.10 -3.98 5.89 31.88 0.19 -3.79 16 24 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 25 H 0.04 1.86 7.83 -2.39 -0.02 1.84 16 26 H 0.03 1.46 7.94 -2.39 -0.02 1.44 16 27 H 0.07 2.46 8.04 -2.39 -0.02 2.44 16 28 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.41 9.29 7.04 -92.71 -0.65 8.64 16 30 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 31 H 0.20 1.62 8.06 -2.92 -0.02 1.60 16 32 H 0.19 2.28 7.01 -2.91 -0.02 2.26 16 33 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.08 2.75 7.94 -2.39 -0.02 2.73 16 Total: -1.00 -68.56 300.77 2.70 -65.86 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.46 Total: 13.76 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 3.57 Total: -25.39 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -1.98 Total: -76.86 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.07 Total: -24.11 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -1.30 Total: 1.62 kcal Total: -68.56 2.70 -65.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295552832.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.140 kcal (2) G-P(sol) polarization free energy of solvation -68.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds