Wall clock time and date at job start Mon Mar 30 2020 06:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38271 * 120.01440 * 2 1 4 4 Cl 1.73598 * 119.89894 * 0.03770 * 3 2 1 5 5 C 1.38431 * 120.20401 * 179.76851 * 3 2 1 6 6 C 1.38276 * 120.22692 * 0.50624 * 5 3 2 7 7 C 1.38649 * 120.02903 * 359.49328 * 6 5 3 8 8 N 1.39825 * 120.10486 * 180.27874 * 7 6 5 9 9 C 1.38882 * 120.01618 * 180.02562 * 2 1 3 10 10 N 1.39398 * 120.11199 * 359.96051 * 9 2 1 11 11 C 1.36810 * 119.99574 * 270.02090 * 10 9 2 12 12 H 1.08003 * 119.99212 * 174.55372 * 11 10 9 13 13 C 1.38752 * 120.00283 * 354.55124 * 11 10 9 14 14 N 1.31623 * 119.99954 * 6.58851 * 13 11 10 15 15 Si 1.86799 * 119.99853 * 186.58816 * 13 11 10 16 16 H 1.48498 * 109.47127 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.46976 * 120.00183 * 15 13 11 18 18 H 1.48506 * 109.46781 * 240.00153 * 15 13 11 19 19 C 1.46502 * 120.00110 * 90.02028 * 10 9 2 20 20 C 1.47196 * 109.47094 * 95.83680 * 19 10 9 21 21 N 5.38283 * 105.42641 * 201.43485 * 2 1 3 22 22 H 1.08995 * 109.47433 * 269.97918 * 1 2 3 23 23 H 1.09001 * 109.47225 * 29.98231 * 1 2 3 24 24 H 1.09008 * 109.47191 * 149.97692 * 1 2 3 25 25 H 1.07994 * 119.88353 * 180.27853 * 5 3 2 26 26 H 1.08004 * 119.98565 * 179.76959 * 6 5 3 27 27 H 0.97005 * 119.99974 * 359.97438 * 8 7 6 28 28 H 0.96999 * 120.00191 * 180.02562 * 8 7 6 29 29 H 0.96998 * 120.00441 * 179.97438 * 14 13 11 30 30 H 1.08998 * 109.46790 * 215.84143 * 19 10 9 31 31 H 1.09002 * 109.46997 * 335.83850 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1986 1.1973 0.0000 4 17 1.3283 2.6994 0.0010 5 6 3.5829 1.2019 0.0048 6 6 4.2830 0.0095 -0.0009 7 6 3.5991 -1.1967 -0.0008 8 7 4.3055 -2.4034 -0.0007 9 6 2.2017 -1.2026 -0.0005 10 7 1.5074 -2.4113 -0.0002 11 6 1.1671 -3.0043 1.1848 12 1 0.5540 -3.8935 1.1870 13 6 1.6095 -2.4635 2.3835 14 7 2.2457 -1.3112 2.3906 15 14 1.3024 -3.3708 3.9872 16 1 0.5721 -4.6336 3.7095 17 1 2.6013 -3.6820 4.6364 18 1 0.4893 -2.5176 4.8906 19 6 1.1422 -3.0466 -1.2688 20 6 2.1562 -4.0530 -1.6234 21 7 2.9388 -4.8300 -1.8962 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3634 0.8901 -0.5136 24 1 -0.3634 -0.8898 -0.5142 25 1 4.1178 2.1400 0.0094 26 1 5.3630 0.0176 -0.0008 27 1 5.2755 -2.3976 -0.0010 28 1 3.8255 -3.2463 -0.0011 29 1 2.5547 -0.9329 3.2286 30 1 0.1706 -3.5300 -1.1666 31 1 1.0911 -2.2906 -2.0524 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304479698.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:54 Heat of formation + Delta-G solvation = 60.271094 kcal Electronic energy + Delta-G solvation = -18326.300310 eV Core-core repulsion = 15440.857387 eV Total energy + Delta-G solvation = -2885.442924 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.48641 -37.85741 -37.01007 -36.30118 -34.93389 -33.36132 -32.17017 -29.28276 -28.25931 -27.33221 -25.02703 -22.24414 -21.79848 -19.36234 -18.58490 -17.74099 -17.05394 -16.72878 -16.33533 -15.56855 -15.40908 -15.22180 -14.53380 -14.37931 -13.86047 -13.76921 -13.42706 -13.08728 -12.99467 -12.87345 -12.84713 -12.49662 -12.45309 -12.27889 -12.24755 -11.80852 -11.76622 -11.24587 -10.87260 -10.56342 -9.15430 -9.09016 -8.11151 -7.28616 -5.26571 1.02937 1.10979 1.47733 1.53919 1.58416 1.72923 1.93138 2.06503 2.57076 3.25176 3.30594 3.50571 3.63071 3.70621 4.41510 4.51093 4.67549 4.85492 4.91649 4.96608 5.16207 5.27353 5.32908 5.65540 5.68079 5.74309 5.83021 6.12482 6.18736 6.36696 6.82624 6.94343 7.25241 7.31494 7.88202 8.17039 9.22369 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.016012 B = 0.009937 C = 0.008055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.295479 B = 2817.184441 C = 3475.136429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.046 4.046 3 C -0.094 4.094 4 Cl -0.102 7.102 5 C -0.092 4.092 6 C -0.211 4.211 7 C 0.221 3.779 8 N -0.870 5.870 9 C 0.209 3.791 10 N -0.548 5.548 11 C -0.272 4.272 12 H 0.091 0.909 13 C -0.022 4.022 14 N -0.885 5.885 15 Si 0.948 3.052 16 H -0.271 1.271 17 H -0.308 1.308 18 H -0.300 1.300 19 C 0.225 3.775 20 C 0.214 3.786 21 N -0.502 5.502 22 H 0.043 0.957 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.126 0.874 26 H 0.120 0.880 27 H 0.390 0.610 28 H 0.391 0.609 29 H 0.242 0.758 30 H 0.129 0.871 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.916 3.593 -6.196 7.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.050 4.050 3 C -0.123 4.123 4 Cl -0.074 7.074 5 C -0.112 4.112 6 C -0.235 4.235 7 C 0.114 3.886 8 N -0.408 5.408 9 C 0.111 3.889 10 N -0.264 5.264 11 C -0.400 4.400 12 H 0.109 0.891 13 C -0.221 4.221 14 N -0.528 5.528 15 Si 0.779 3.221 16 H -0.195 1.195 17 H -0.236 1.236 18 H -0.227 1.227 19 C 0.096 3.904 20 C -0.106 4.106 21 N -0.183 5.183 22 H 0.061 0.939 23 H 0.081 0.919 24 H 0.092 0.908 25 H 0.144 0.856 26 H 0.138 0.862 27 H 0.217 0.783 28 H 0.220 0.780 29 H 0.053 0.947 30 H 0.147 0.853 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.850 2.665 -6.412 6.996 hybrid contribution 0.150 -0.357 1.785 1.827 sum -0.699 2.308 -4.627 5.218 Atomic orbital electron populations 1.20419 0.90911 1.01851 1.00823 1.19707 0.96315 0.90658 0.98325 1.20255 0.91821 0.85109 1.15082 1.98243 1.77599 1.33851 1.97672 1.20479 0.91709 0.97711 1.01293 1.20191 0.98724 0.90784 1.13777 1.18361 0.92060 0.86185 0.92025 1.42314 1.07813 1.05641 1.85051 1.16042 0.87141 0.85522 1.00208 1.41267 1.63969 1.19650 1.01484 1.19504 1.28418 1.09023 0.83013 0.89108 1.25278 0.99881 0.97337 0.99598 1.70096 1.41409 1.16946 1.24321 0.85503 0.76081 0.78537 0.81948 1.19517 1.23603 1.22725 1.19122 0.92284 0.90659 0.88355 1.31870 0.94520 0.93514 0.90677 1.81032 1.12523 1.13377 1.11328 0.93866 0.91932 0.90814 0.85600 0.86201 0.78300 0.78038 0.94671 0.85326 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.96 9.37 71.23 0.67 -2.29 16 2 C -0.05 -1.81 5.16 -19.70 -0.10 -1.91 16 3 C -0.09 -3.57 6.31 22.32 0.14 -3.43 16 4 Cl -0.10 -3.40 27.28 -2.72 -0.07 -3.47 16 5 C -0.09 -3.38 9.82 22.32 0.22 -3.16 16 6 C -0.21 -7.93 9.89 22.38 0.22 -7.71 16 7 C 0.22 8.92 5.72 38.33 0.22 9.14 16 8 N -0.87 -33.29 9.07 -50.92 -0.46 -33.75 16 9 C 0.21 8.49 2.82 38.46 0.11 8.60 16 10 N -0.55 -21.07 0.86 -521.23 -0.45 -21.52 16 11 C -0.27 -11.94 9.75 84.04 0.82 -11.12 16 12 H 0.09 3.85 7.84 -2.91 -0.02 3.83 16 13 C -0.02 -1.07 5.44 84.85 0.46 -0.61 16 14 N -0.88 -44.49 9.36 21.64 0.20 -44.29 16 15 Si 0.95 41.45 29.56 68.60 2.03 43.47 16 16 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 17 H -0.31 -14.23 7.11 99.48 0.71 -13.53 16 18 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 19 C 0.23 6.57 5.63 84.57 0.48 7.05 16 20 C 0.21 7.11 13.99 89.44 1.25 8.36 16 21 N -0.50 -18.66 18.43 20.01 0.37 -18.30 16 22 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.06 1.98 6.89 -2.39 -0.02 1.96 16 24 H 0.07 2.38 7.00 -2.38 -0.02 2.36 16 25 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 26 H 0.12 3.98 8.06 -2.91 -0.02 3.95 16 27 H 0.39 13.11 8.84 -92.70 -0.82 12.29 16 28 H 0.39 15.95 6.18 -92.71 -0.57 15.38 16 29 H 0.24 12.69 8.31 -92.71 -0.77 11.92 16 30 H 0.13 3.04 8.09 -2.39 -0.02 3.02 16 31 H 0.12 2.93 8.00 -2.39 -0.02 2.91 16 Total: -1.00 -54.44 285.19 5.89 -48.55 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: -0.20 Total: 26.38 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 4.48 Total: 2.92 kcal Atomic # 7 Polarization: -117.51 SS G_CDS: -0.34 Total: -117.85 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.47 kcal Atomic # 17 Polarization: -3.40 SS G_CDS: -0.07 Total: -3.47 kcal Total: -54.44 5.89 -48.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304479698.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.820 kcal (2) G-P(sol) polarization free energy of solvation -54.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds