Wall clock time and date at job start Mon Mar 30 2020 06:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33194 * 1 3 3 Cl 1.73599 * 119.99992 * 2 1 4 4 C 1.47044 * 120.00307 * 180.02562 * 2 1 3 5 5 O 1.21656 * 120.00097 * 294.70245 * 4 2 1 6 6 N 1.34780 * 119.99919 * 114.69537 * 4 2 1 7 7 C 1.36812 * 119.99760 * 205.19935 * 6 4 2 8 8 H 1.08002 * 120.00750 * 247.72839 * 7 6 4 9 9 C 1.39078 * 119.99690 * 67.73952 * 7 6 4 10 10 N 1.31345 * 120.00265 * 68.20712 * 9 7 6 11 11 Si 1.86801 * 119.99535 * 248.20333 * 9 7 6 12 12 H 1.48506 * 109.46938 * 90.00131 * 11 9 7 13 13 H 1.48501 * 109.47271 * 209.99959 * 11 9 7 14 14 H 1.48499 * 109.47570 * 330.00055 * 11 9 7 15 15 C 1.46497 * 120.00099 * 25.20855 * 6 4 2 16 16 C 1.50701 * 109.47373 * 94.31563 * 15 6 4 17 17 C 1.38237 * 120.00023 * 5.48250 * 16 15 6 18 18 C 1.38226 * 120.00112 * 179.97438 * 17 16 15 19 19 C 1.38235 * 120.00039 * 359.97438 * 18 17 16 20 20 C 1.38239 * 119.99942 * 0.28101 * 19 18 17 21 21 C 1.38225 * 119.99647 * 359.50963 * 20 19 18 22 22 H 1.08005 * 119.99933 * 173.79566 * 1 2 3 23 23 H 1.08008 * 120.00179 * 353.78530 * 1 2 3 24 24 H 0.97003 * 119.99722 * 179.97438 * 10 9 7 25 25 H 1.09000 * 109.46860 * 334.31388 * 15 6 4 26 26 H 1.08997 * 109.46947 * 214.31964 * 15 6 4 27 27 H 1.08002 * 119.99879 * 359.97438 * 17 16 15 28 28 H 1.08005 * 120.00205 * 180.02562 * 18 17 16 29 29 H 1.07999 * 120.00101 * 180.02562 * 19 18 17 30 30 H 1.07994 * 119.99623 * 179.72272 * 20 19 18 31 31 H 1.08010 * 120.00273 * 180.28095 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3319 0.0000 0.0000 3 17 2.1999 1.5034 0.0000 4 6 2.0672 -1.2734 -0.0006 5 8 1.9901 -2.0208 0.9562 6 7 2.8265 -1.6127 -1.0612 7 6 3.0853 -2.9302 -1.3237 8 1 4.0884 -3.3156 -1.2156 9 6 2.0565 -3.7733 -1.7301 10 7 1.4995 -3.6091 -2.9082 11 14 1.4671 -5.1392 -0.6004 12 1 0.3728 -4.6289 0.2641 13 1 0.9652 -6.2742 -1.4160 14 1 2.5946 -5.6004 0.2488 15 6 3.3749 -0.5706 -1.9328 16 6 4.7701 -0.2219 -1.4824 17 6 5.3695 -0.9438 -0.4673 18 6 6.6494 -0.6243 -0.0546 19 6 7.3302 0.4169 -0.6572 20 6 6.7289 1.1423 -1.6688 21 6 5.4506 0.8200 -2.0844 22 1 -0.5400 -0.9299 -0.1011 23 1 -0.5401 0.9299 0.1013 24 1 0.7822 -4.1974 -3.1918 25 1 2.7436 0.3164 -1.8800 26 1 3.4049 -0.9346 -2.9597 27 1 4.8377 -1.7576 0.0033 28 1 7.1179 -1.1886 0.7383 29 1 8.3304 0.6663 -0.3351 30 1 7.2591 1.9586 -2.1365 31 1 4.9824 1.3838 -2.8778 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307064676.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:14 Heat of formation + Delta-G solvation = 13.284195 kcal Electronic energy + Delta-G solvation = -17877.831446 eV Core-core repulsion = 14958.058266 eV Total energy + Delta-G solvation = -2919.773180 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.87448 -39.59704 -37.65476 -36.58249 -34.65482 -33.41558 -32.10905 -31.49261 -27.88869 -26.59948 -24.02567 -23.20408 -22.13409 -20.57925 -19.14733 -18.16354 -17.31618 -16.86215 -16.56803 -16.45055 -15.86256 -15.41066 -14.94863 -14.56047 -14.36841 -14.14706 -14.05912 -13.65799 -13.52585 -13.25643 -13.10057 -12.67824 -12.57865 -12.26476 -12.05321 -11.89987 -11.70844 -10.71176 -10.44971 -10.28334 -9.69738 -9.52667 -9.39240 -8.61015 -6.08111 0.51788 0.59011 0.64643 0.96520 1.17587 1.36687 1.50425 1.98339 2.28430 2.46709 2.98283 3.02432 3.85930 4.11470 4.20396 4.28826 4.43826 4.49899 4.60005 4.77088 4.81359 4.90279 4.97165 5.07839 5.23436 5.26792 5.31929 5.67479 5.74812 5.92308 6.25898 6.28477 6.83645 6.96386 7.30212 8.03458 8.05781 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.017637 B = 0.009110 C = 0.007083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.167561 B = 3072.905327 C = 3952.266799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.124 4.124 3 Cl -0.055 7.055 4 C 0.515 3.485 5 O -0.586 6.586 6 N -0.430 5.430 7 C -0.466 4.466 8 H 0.056 0.944 9 C 0.130 3.870 10 N -0.749 5.749 11 Si 0.872 3.128 12 H -0.283 1.283 13 H -0.271 1.271 14 H -0.278 1.278 15 C 0.127 3.873 16 C -0.090 4.090 17 C -0.127 4.127 18 C -0.135 4.135 19 C -0.130 4.130 20 C -0.119 4.119 21 C -0.125 4.125 22 H 0.116 0.884 23 H 0.161 0.839 24 H 0.287 0.713 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.123 0.877 29 H 0.147 0.853 30 H 0.153 0.847 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.762 11.332 -0.689 11.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.153 4.153 3 Cl -0.027 7.027 4 C 0.304 3.696 5 O -0.470 6.470 6 N -0.150 5.150 7 C -0.585 4.585 8 H 0.073 0.927 9 C -0.095 4.095 10 N -0.372 5.372 11 Si 0.695 3.305 12 H -0.210 1.210 13 H -0.197 1.197 14 H -0.203 1.203 15 C 0.005 3.995 16 C -0.091 4.091 17 C -0.145 4.145 18 C -0.153 4.153 19 C -0.148 4.148 20 C -0.137 4.137 21 C -0.143 4.143 22 H 0.134 0.866 23 H 0.179 0.821 24 H 0.098 0.902 25 H 0.106 0.894 26 H 0.089 0.911 27 H 0.113 0.887 28 H 0.141 0.859 29 H 0.165 0.835 30 H 0.170 0.830 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.701 11.059 -0.483 11.394 hybrid contribution -0.442 -1.145 0.622 1.376 sum 2.259 9.913 0.139 10.168 Atomic orbital electron populations 1.24791 0.91995 1.05201 0.92968 1.23456 0.95312 0.86959 1.09597 1.98332 1.77710 1.30047 1.96610 1.18869 0.82770 0.85104 0.82821 1.90622 1.66974 1.55146 1.34284 1.42804 1.45198 1.05135 1.21820 1.17728 0.95724 0.84542 1.60551 0.92661 1.25652 0.94405 0.97425 0.92014 1.70698 1.17362 1.35014 1.14091 0.86952 0.79302 0.80835 0.83434 1.20961 1.19660 1.20293 1.20953 0.91523 0.92183 0.94863 1.20410 0.96664 0.95923 0.96144 1.21213 0.96017 0.99511 0.97805 1.21324 0.94473 0.98840 1.00700 1.21389 1.00703 0.95602 0.97073 1.21405 0.94722 1.00290 0.97299 1.21139 0.95711 0.96944 1.00529 0.86604 0.82097 0.90207 0.89408 0.91118 0.88683 0.85865 0.83533 0.82957 0.84344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.54 14.19 66.68 0.95 -2.59 16 2 C -0.12 -4.80 5.31 23.44 0.12 -4.68 16 3 Cl -0.06 -1.79 26.50 -2.72 -0.07 -1.87 16 4 C 0.52 25.60 6.63 86.55 0.57 26.17 16 5 O -0.59 -33.54 16.72 -4.21 -0.07 -33.61 16 6 N -0.43 -21.50 1.50 -643.77 -0.97 -22.47 16 7 C -0.47 -25.90 7.34 84.12 0.62 -25.28 16 8 H 0.06 3.32 7.43 -2.91 -0.02 3.30 16 9 C 0.13 6.98 5.18 84.97 0.44 7.42 16 10 N -0.75 -38.46 13.95 21.69 0.30 -38.16 16 11 Si 0.87 43.13 29.16 68.60 2.00 45.13 16 12 H -0.28 -14.67 7.11 99.48 0.71 -13.96 16 13 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 14 H -0.28 -14.44 7.11 99.48 0.71 -13.73 16 15 C 0.13 5.37 5.39 85.63 0.46 5.83 16 16 C -0.09 -3.50 5.83 -19.87 -0.12 -3.62 16 17 C -0.13 -5.33 9.05 22.27 0.20 -5.12 16 18 C -0.14 -4.62 10.05 22.27 0.22 -4.40 16 19 C -0.13 -3.55 10.05 22.27 0.22 -3.33 16 20 C -0.12 -3.11 10.05 22.27 0.22 -2.88 16 21 C -0.12 -3.83 9.74 22.27 0.22 -3.61 16 22 H 0.12 3.88 8.05 -2.91 -0.02 3.85 16 23 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 24 H 0.29 13.31 8.31 -92.71 -0.77 12.54 16 25 H 0.09 3.34 4.98 -2.39 -0.01 3.32 16 26 H 0.07 3.15 8.07 -2.39 -0.02 3.13 16 27 H 0.09 4.79 5.75 -2.91 -0.02 4.77 16 28 H 0.12 3.79 8.06 -2.91 -0.02 3.77 16 29 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 30 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 31 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -65.27 290.83 6.47 -58.79 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 1.14 Total: 8.28 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: 4.14 Total: -16.09 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: -0.66 Total: -60.63 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -0.07 Total: -33.61 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.00 Total: 45.13 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -0.07 Total: -1.87 kcal Total: -65.27 6.47 -58.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307064676.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.076 kcal (2) G-P(sol) polarization free energy of solvation -65.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds