Wall clock time and date at job start Mon Mar 30 2020 06:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47659 * 2 1 4 4 N 1.46902 * 109.47531 * 120.00329 * 2 1 3 5 5 C 1.46898 * 110.99759 * 274.99774 * 4 2 1 6 6 C 1.52995 * 109.47007 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.47397 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47320 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00241 * 0.02562 * 8 7 6 10 10 C 1.37883 * 119.99831 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99950 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99838 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47381 * 59.99998 * 12 10 8 14 14 H 1.48500 * 109.47009 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.46795 * 299.99932 * 12 10 8 16 16 C 1.53001 * 109.46613 * 240.00146 * 2 1 3 17 17 H 1.09003 * 115.56659 * 274.30627 * 16 2 1 18 18 C 1.53079 * 117.51442 * 128.61096 * 16 2 1 19 19 C 1.52997 * 59.98332 * 252.52258 * 18 16 2 20 20 Cl 1.80299 * 117.50400 * 107.50110 * 19 18 16 21 21 Cl 1.80299 * 117.49560 * 252.49961 * 19 18 16 22 22 H 1.08999 * 109.47192 * 59.99232 * 1 2 3 23 23 H 1.08994 * 109.47481 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46664 * 299.99547 * 1 2 3 25 25 H 1.00905 * 110.99550 * 38.94843 * 4 2 1 26 26 H 1.08997 * 109.47509 * 299.99914 * 5 4 2 27 27 H 1.09000 * 109.47294 * 59.99934 * 5 4 2 28 28 H 1.09002 * 109.47745 * 299.99993 * 6 5 4 29 29 H 1.08997 * 109.47548 * 60.00182 * 6 5 4 30 30 H 1.09006 * 109.46939 * 300.00288 * 7 6 5 31 31 H 1.08995 * 109.47273 * 59.99629 * 7 6 5 32 32 H 0.97006 * 119.99634 * 179.97438 * 11 10 8 33 33 H 1.08998 * 117.49992 * 145.03016 * 18 16 2 34 34 H 1.09001 * 117.50746 * 359.97438 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0826 0.2225 2.3468 6 6 2.5953 -0.5333 3.5743 7 6 2.6601 0.4196 4.7696 8 6 3.1657 -0.3247 5.9785 9 1 3.4161 -1.3725 5.9019 10 6 3.3095 0.3323 7.1822 11 7 3.0060 1.6085 7.2751 12 14 3.9369 -0.5902 8.6806 13 1 5.2932 -1.1260 8.4000 14 1 3.9997 0.3347 9.8407 15 1 3.0159 -1.7126 8.9922 16 6 2.0398 -0.7212 -1.2493 17 1 2.1270 -1.8045 -1.1645 18 6 3.0743 0.0053 -2.1126 19 6 1.6356 -0.1494 -2.6096 20 17 0.5946 1.3227 -2.6178 21 17 1.3390 -1.3190 -3.9494 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.4496 -1.4980 1.4100 26 1 2.7589 1.0461 2.1182 27 1 1.0872 0.6162 2.5525 28 1 1.9186 -1.3567 3.8029 29 1 3.5905 -0.9273 3.3690 30 1 3.3366 1.2433 4.5413 31 1 1.6647 0.8133 4.9749 32 1 3.1069 2.0706 8.1221 33 1 3.8415 -0.6001 -2.5953 34 1 3.3912 0.9973 -1.7907 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308657079.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:32 Heat of formation + Delta-G solvation = -22.794501 kcal Electronic energy + Delta-G solvation = -15524.984348 eV Core-core repulsion = 12737.046924 eV Total energy + Delta-G solvation = -2787.937424 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 265.070 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.82576 -37.73690 -37.04277 -36.40980 -35.27272 -33.33157 -30.46748 -27.70146 -25.20800 -23.70329 -23.23684 -22.11883 -21.03298 -18.47696 -17.67593 -16.76845 -16.49501 -16.30908 -15.55393 -15.23103 -14.50719 -14.22768 -14.15923 -13.95412 -13.63540 -13.48984 -13.17745 -12.98406 -12.69404 -12.47208 -12.45939 -12.26865 -12.06714 -11.91659 -11.72388 -11.51910 -11.38523 -11.22834 -11.14153 -10.56262 -10.53393 -9.35606 -8.18902 -6.29859 0.17103 1.18709 1.41203 1.44275 1.52169 2.22018 2.42277 2.97718 3.14305 3.32966 3.58416 3.91082 4.12998 4.28950 4.29395 4.47437 4.49432 4.68064 4.72911 4.78726 4.89152 4.97373 5.07510 5.17870 5.26109 5.28350 5.54107 5.77675 5.87960 6.05337 6.28469 6.48598 6.87443 7.39432 8.92788 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.048543 B = 0.003064 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.665869 B = 9137.526627 C = 9398.227297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.113 3.887 3 H 0.078 0.922 4 N -0.679 5.679 5 C 0.074 3.926 6 C -0.092 4.092 7 C 0.025 3.975 8 C -0.544 4.544 9 H 0.060 0.940 10 C -0.002 4.002 11 N -0.934 5.934 12 Si 0.965 3.035 13 H -0.266 1.266 14 H -0.284 1.284 15 H -0.267 1.267 16 C -0.094 4.094 17 H 0.138 0.862 18 C -0.127 4.127 19 C -0.004 4.004 20 Cl -0.100 7.100 21 Cl -0.101 7.101 22 H 0.081 0.919 23 H 0.064 0.936 24 H 0.048 0.952 25 H 0.347 0.653 26 H 0.062 0.938 27 H 0.023 0.977 28 H 0.050 0.950 29 H 0.054 0.946 30 H -0.009 1.009 31 H -0.010 1.010 32 H 0.263 0.737 33 H 0.137 0.863 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.326 -4.405 -22.519 23.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.003 3.997 3 H 0.096 0.904 4 N -0.310 5.310 5 C -0.055 4.055 6 C -0.130 4.130 7 C -0.013 4.013 8 C -0.582 4.582 9 H 0.078 0.922 10 C -0.199 4.199 11 N -0.575 5.575 12 Si 0.789 3.211 13 H -0.191 1.191 14 H -0.209 1.209 15 H -0.191 1.191 16 C -0.114 4.114 17 H 0.156 0.844 18 C -0.164 4.164 19 C -0.055 4.055 20 Cl -0.073 7.073 21 Cl -0.074 7.074 22 H 0.100 0.900 23 H 0.083 0.917 24 H 0.067 0.933 25 H 0.166 0.834 26 H 0.081 0.919 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.010 0.990 31 H 0.008 0.992 32 H 0.072 0.928 33 H 0.155 0.845 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.777 -4.154 -22.679 23.223 hybrid contribution -0.941 0.119 1.041 1.408 sum -3.718 -4.035 -21.638 22.323 Atomic orbital electron populations 1.22779 0.96061 1.03067 1.03507 1.21111 0.93327 0.97012 0.88286 0.90357 1.60467 1.57405 1.09846 1.03283 1.21825 0.98673 0.95149 0.89808 1.21369 1.00396 0.98000 0.93260 1.18968 0.94732 0.94553 0.93020 1.21698 1.43757 0.96944 0.95795 0.92154 1.25995 0.95698 0.95767 1.02467 1.70094 1.49899 1.10707 1.26777 0.85507 0.79268 0.78349 0.77973 1.19110 1.20898 1.19144 1.23174 0.98836 1.01905 0.87482 0.84428 1.24188 0.89352 1.04470 0.98408 1.26969 0.98320 0.87543 0.92711 1.98725 1.70934 1.39762 1.97842 1.98748 1.96798 1.60159 1.51743 0.89999 0.91665 0.93283 0.83415 0.91931 0.95875 0.93084 0.92682 0.99040 0.99211 0.92797 0.84491 0.85766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.99 8.90 71.98 0.64 -3.35 16 2 C 0.11 2.36 2.30 44.91 0.10 2.47 16 3 H 0.08 1.76 7.56 -2.39 -0.02 1.75 16 4 N -0.68 -17.19 6.25 -491.59 -3.07 -20.27 16 5 C 0.07 2.43 5.48 86.30 0.47 2.90 16 6 C -0.09 -3.72 5.41 30.59 0.17 -3.55 16 7 C 0.02 1.31 4.97 29.85 0.15 1.46 16 8 C -0.54 -31.12 9.11 25.60 0.23 -30.89 16 9 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 10 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 11 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 12 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 13 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 15 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 16 C -0.09 -1.60 5.30 -10.77 -0.06 -1.65 16 17 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 18 C -0.13 -1.81 9.86 30.62 0.30 -1.50 16 19 C 0.00 -0.06 3.46 30.59 0.11 0.05 16 20 Cl -0.10 -1.86 25.46 -2.72 -0.07 -1.92 16 21 Cl -0.10 -1.72 29.29 -2.72 -0.08 -1.80 16 22 H 0.08 1.61 4.74 -2.39 -0.01 1.60 16 23 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 24 H 0.05 1.12 7.45 -2.38 -0.02 1.10 16 25 H 0.35 8.15 8.47 -89.69 -0.76 7.39 16 26 H 0.06 2.10 8.05 -2.39 -0.02 2.08 16 27 H 0.02 0.77 7.44 -2.39 -0.02 0.75 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 30 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 31 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 32 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 33 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.12 1.72 8.05 -2.39 -0.02 1.70 16 Total: -1.00 -62.43 310.20 2.00 -60.43 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 0.33 Total: 7.88 kcal Atomic # 6 Polarization: -36.29 SS G_CDS: 2.58 Total: -33.71 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: -2.79 Total: -77.18 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 17 Polarization: -3.58 SS G_CDS: -0.15 Total: -3.73 kcal Total: -62.43 2.00 -60.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308657079.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.635 kcal (2) G-P(sol) polarization free energy of solvation -62.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds