Wall clock time and date at job start Mon Mar 30 2020 06:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47230 * 2 1 4 4 N 1.46893 * 109.47210 * 240.00063 * 2 1 3 5 5 C 1.46903 * 111.00158 * 85.00226 * 4 2 1 6 6 C 1.53000 * 109.47143 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.46992 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46847 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00511 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99783 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99573 * 180.27665 * 10 8 7 12 12 Si 1.86800 * 119.99781 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46758 * 89.99934 * 12 10 8 14 14 H 1.48499 * 109.47026 * 209.99782 * 12 10 8 15 15 H 1.48496 * 109.47474 * 329.99818 * 12 10 8 16 16 C 1.53006 * 109.47266 * 119.99681 * 2 1 3 17 17 H 1.09001 * 115.54487 * 85.58590 * 16 2 1 18 18 C 1.52994 * 117.49941 * 231.25367 * 16 2 1 19 19 C 1.52994 * 117.50018 * 299.91698 * 16 2 1 20 20 Cl 1.80307 * 117.49752 * 359.97438 * 19 16 2 21 21 Cl 1.80300 * 117.49957 * 144.99383 * 19 16 2 22 22 H 1.09003 * 109.47230 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46958 * 299.99871 * 1 2 3 24 24 H 1.09000 * 109.47077 * 60.00150 * 1 2 3 25 25 H 1.00902 * 110.99870 * 321.04497 * 4 2 1 26 26 H 1.08998 * 109.47526 * 59.99808 * 5 4 2 27 27 H 1.09005 * 109.46786 * 299.99527 * 5 4 2 28 28 H 1.08998 * 109.47307 * 59.99379 * 6 5 4 29 29 H 1.08997 * 109.46799 * 299.99592 * 6 5 4 30 30 H 1.08992 * 109.47264 * 59.99968 * 7 6 5 31 31 H 1.09005 * 109.46939 * 299.99233 * 7 6 5 32 32 H 0.97004 * 119.99485 * 179.72881 * 11 10 8 33 33 H 1.09002 * 117.49775 * 214.97829 * 18 16 2 34 34 H 1.08999 * 117.50450 * 359.97438 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1994 5 6 2.0825 0.2227 -2.3469 6 6 2.5951 -0.5331 -3.5744 7 6 2.6599 0.4199 -4.7697 8 6 3.1654 -0.3244 -5.9786 9 1 3.4150 -1.3724 -5.9023 10 6 3.3082 0.3323 -7.1826 11 7 3.7442 -0.3186 -8.2389 12 14 2.8745 2.1444 -7.3152 13 1 4.0742 2.9642 -7.0090 14 1 2.4098 2.4426 -8.6937 15 1 1.7946 2.4670 -6.3482 16 6 2.0400 -0.7212 1.2493 17 1 2.1253 -1.8046 1.1647 18 6 3.0763 0.0040 2.1101 19 6 1.6374 -0.1483 2.6096 20 17 0.5987 1.3255 2.6178 21 17 1.3404 -1.3168 3.9502 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.4495 -1.4979 -1.4100 26 1 2.7588 1.0463 -2.1182 27 1 1.0870 0.6163 -2.5525 28 1 1.9184 -1.3565 -3.8029 29 1 3.5904 -0.9271 -3.3690 30 1 3.3364 1.2434 -4.5415 31 1 1.6644 0.8135 -4.9750 32 1 3.8409 0.1425 -9.0869 33 1 3.8431 -0.6023 2.5922 34 1 3.3951 0.9948 1.7862 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308657080.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:33 Heat of formation + Delta-G solvation = -2.422840 kcal Electronic energy + Delta-G solvation = -15575.458540 eV Core-core repulsion = 12788.404497 eV Total energy + Delta-G solvation = -2787.054043 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 265.070 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.04745 -36.80306 -36.33889 -35.41019 -33.56455 -31.77776 -29.40714 -26.33789 -23.99630 -22.60330 -22.02857 -20.74754 -19.85783 -16.92455 -16.75564 -15.80811 -15.24103 -14.75823 -14.24943 -14.00795 -13.32408 -13.29234 -13.11052 -12.92521 -12.56943 -12.31954 -12.06002 -11.68831 -11.63874 -11.32491 -11.16578 -11.04266 -10.92767 -10.80890 -10.52562 -10.04901 -9.92266 -9.72635 -9.53162 -9.17291 -8.53266 -8.31859 -6.03585 -4.01371 0.85720 1.87748 2.90527 3.30690 3.38025 3.41371 3.75395 4.01855 4.45550 4.46308 4.70512 4.92703 5.13790 5.18032 5.26348 5.30331 5.52489 5.55747 5.70582 5.76259 5.84587 6.06357 6.16327 6.53388 6.55072 6.90646 7.14102 7.33230 7.41931 7.50698 7.80776 8.55469 9.02014 9.59038 11.10021 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.043017 B = 0.003300 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.745393 B = 8482.016612 C = 8800.366413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.110 3.890 3 H 0.084 0.916 4 N -0.682 5.682 5 C 0.058 3.942 6 C -0.099 4.099 7 C -0.013 4.013 8 C -0.519 4.519 9 H 0.072 0.928 10 C 0.065 3.935 11 N -0.905 5.905 12 Si 0.881 3.119 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.266 1.266 16 C -0.091 4.091 17 H 0.132 0.868 18 C -0.136 4.136 19 C -0.004 4.004 20 Cl -0.092 7.092 21 Cl -0.100 7.100 22 H 0.058 0.942 23 H 0.077 0.923 24 H 0.060 0.940 25 H 0.342 0.658 26 H 0.067 0.933 27 H 0.026 0.974 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.011 0.989 31 H 0.013 0.987 32 H 0.263 0.737 33 H 0.120 0.880 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.585 1.311 24.475 25.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.001 4.001 3 H 0.102 0.898 4 N -0.313 5.313 5 C -0.070 4.070 6 C -0.137 4.137 7 C -0.051 4.051 8 C -0.557 4.557 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.544 5.544 12 Si 0.708 3.292 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.191 1.191 16 C -0.111 4.111 17 H 0.150 0.850 18 C -0.174 4.174 19 C -0.056 4.056 20 Cl -0.065 7.065 21 Cl -0.073 7.073 22 H 0.077 0.923 23 H 0.096 0.904 24 H 0.079 0.921 25 H 0.161 0.839 26 H 0.085 0.915 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.029 0.971 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.138 0.862 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.987 1.444 24.546 25.089 hybrid contribution -1.271 1.046 -0.257 1.666 sum -6.258 2.490 24.290 25.206 Atomic orbital electron populations 1.22817 0.96337 1.02788 1.03848 1.21134 0.93114 0.97229 0.88579 0.89766 1.60516 1.56872 1.10151 1.03734 1.22180 0.99199 0.95432 0.90236 1.21445 1.00877 0.98618 0.92808 1.19540 0.96357 0.95328 0.93844 1.21154 1.43493 0.98328 0.92742 0.91019 1.25049 0.94668 0.98126 0.95765 1.69921 1.47043 1.36608 1.00801 0.86767 0.79296 0.85913 0.77214 1.20291 1.21432 1.19100 1.23259 0.97873 1.01709 0.88235 0.85021 1.24043 0.89572 1.04171 0.99571 1.26944 0.97778 0.87871 0.92970 1.98723 1.70705 1.39170 1.97852 1.98748 1.96736 1.60165 1.51656 0.92306 0.90449 0.92130 0.83949 0.91459 0.95529 0.92981 0.91909 0.97065 0.96865 0.92770 0.86161 0.86174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.02 8.90 37.16 0.33 -1.69 16 2 C 0.11 1.15 2.29 -67.72 -0.16 1.00 16 3 H 0.08 0.93 7.56 -51.93 -0.39 0.53 16 4 N -0.68 -8.61 6.25 -106.72 -0.67 -9.27 16 5 C 0.06 0.89 5.48 -3.82 -0.02 0.87 16 6 C -0.10 -1.91 5.41 -26.73 -0.14 -2.06 16 7 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 8 C -0.52 -14.86 9.66 -34.44 -0.33 -15.20 16 9 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 10 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 11 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 12 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 16 C -0.09 -0.82 5.29 -90.62 -0.48 -1.30 16 17 H 0.13 1.16 8.14 -51.93 -0.42 0.73 16 18 C -0.14 -1.06 9.86 -26.70 -0.26 -1.32 16 19 C 0.00 -0.03 3.47 -26.70 -0.09 -0.13 16 20 Cl -0.09 -0.87 25.47 -51.86 -1.32 -2.19 16 21 Cl -0.10 -0.91 29.29 -51.86 -1.52 -2.43 16 22 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 23 H 0.08 0.76 4.75 -51.93 -0.25 0.51 16 24 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 25 H 0.34 4.09 8.47 -39.29 -0.33 3.76 16 26 H 0.07 1.03 8.06 -51.93 -0.42 0.62 16 27 H 0.03 0.40 7.44 -51.93 -0.39 0.02 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 31 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.12 0.89 8.05 -51.93 -0.42 0.47 16 LS Contribution 306.61 15.07 4.62 4.62 Total: -1.00 -29.92 306.61 -9.20 -39.12 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -5.05 Total: -1.22 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -1.37 Total: -18.43 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.11 Total: -36.57 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -2.84 Total: -4.61 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.92 -9.20 -39.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308657080.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.693 kcal (2) G-P(sol) polarization free energy of solvation -29.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds