Wall clock time and date at job start Mon Mar 30 2020 06:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47230 * 2 1 4 4 N 1.46893 * 109.47210 * 240.00063 * 2 1 3 5 5 C 1.46903 * 111.00158 * 85.00226 * 4 2 1 6 6 C 1.53000 * 109.47143 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.46992 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46847 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00511 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99783 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99573 * 180.27665 * 10 8 7 12 12 Si 1.86800 * 119.99781 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46758 * 89.99934 * 12 10 8 14 14 H 1.48499 * 109.47026 * 209.99782 * 12 10 8 15 15 H 1.48496 * 109.47474 * 329.99818 * 12 10 8 16 16 C 1.53006 * 109.47266 * 119.99681 * 2 1 3 17 17 H 1.09001 * 115.54487 * 85.58590 * 16 2 1 18 18 C 1.52994 * 117.49941 * 231.25367 * 16 2 1 19 19 C 1.52994 * 117.50018 * 299.91698 * 16 2 1 20 20 Cl 1.80307 * 117.49752 * 359.97438 * 19 16 2 21 21 Cl 1.80300 * 117.49957 * 144.99383 * 19 16 2 22 22 H 1.09003 * 109.47230 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46958 * 299.99871 * 1 2 3 24 24 H 1.09000 * 109.47077 * 60.00150 * 1 2 3 25 25 H 1.00902 * 110.99870 * 321.04497 * 4 2 1 26 26 H 1.08998 * 109.47526 * 59.99808 * 5 4 2 27 27 H 1.09005 * 109.46786 * 299.99527 * 5 4 2 28 28 H 1.08998 * 109.47307 * 59.99379 * 6 5 4 29 29 H 1.08997 * 109.46799 * 299.99592 * 6 5 4 30 30 H 1.08992 * 109.47264 * 59.99968 * 7 6 5 31 31 H 1.09005 * 109.46939 * 299.99233 * 7 6 5 32 32 H 0.97004 * 119.99485 * 179.72881 * 11 10 8 33 33 H 1.09002 * 117.49775 * 214.97829 * 18 16 2 34 34 H 1.08999 * 117.50450 * 359.97438 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1994 5 6 2.0825 0.2227 -2.3469 6 6 2.5951 -0.5331 -3.5744 7 6 2.6599 0.4199 -4.7697 8 6 3.1654 -0.3244 -5.9786 9 1 3.4150 -1.3724 -5.9023 10 6 3.3082 0.3323 -7.1826 11 7 3.7442 -0.3186 -8.2389 12 14 2.8745 2.1444 -7.3152 13 1 4.0742 2.9642 -7.0090 14 1 2.4098 2.4426 -8.6937 15 1 1.7946 2.4670 -6.3482 16 6 2.0400 -0.7212 1.2493 17 1 2.1253 -1.8046 1.1647 18 6 3.0763 0.0040 2.1101 19 6 1.6374 -0.1483 2.6096 20 17 0.5987 1.3255 2.6178 21 17 1.3404 -1.3168 3.9502 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.4495 -1.4979 -1.4100 26 1 2.7588 1.0463 -2.1182 27 1 1.0870 0.6163 -2.5525 28 1 1.9184 -1.3565 -3.8029 29 1 3.5904 -0.9271 -3.3690 30 1 3.3364 1.2434 -4.5415 31 1 1.6644 0.8135 -4.9750 32 1 3.8409 0.1425 -9.0869 33 1 3.8431 -0.6023 2.5922 34 1 3.3951 0.9948 1.7862 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308657080.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:33 Heat of formation + Delta-G solvation = -20.389557 kcal Electronic energy + Delta-G solvation = -15576.237636 eV Core-core repulsion = 12788.404497 eV Total energy + Delta-G solvation = -2787.833138 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 265.070 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.82240 -37.74552 -37.04094 -36.42195 -35.23313 -33.53273 -30.69484 -27.89168 -25.07676 -23.48038 -23.23298 -22.05592 -21.03355 -18.89307 -17.67276 -16.81055 -16.33942 -16.27254 -15.56244 -15.23867 -14.77332 -14.29340 -14.13642 -14.05458 -13.69533 -13.55285 -13.27443 -12.98275 -12.69979 -12.51068 -12.42932 -12.09679 -11.92882 -11.78220 -11.71820 -11.55223 -11.45295 -11.26932 -11.21827 -10.75006 -10.56723 -9.33627 -8.28180 -6.32286 0.17380 1.19014 1.37093 1.39021 1.50958 2.22417 2.37543 2.97556 3.07300 3.33446 3.58442 3.91501 4.13260 4.27522 4.29154 4.45512 4.49747 4.67207 4.70290 4.78453 4.86039 4.95228 5.02108 5.08540 5.16544 5.27941 5.55044 5.64401 5.68489 6.09403 6.31296 6.47975 6.76549 7.32376 8.88900 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.043017 B = 0.003300 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.745393 B = 8482.016612 C = 8800.366413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.114 3.886 3 H 0.083 0.917 4 N -0.684 5.684 5 C 0.072 3.928 6 C -0.091 4.091 7 C -0.011 4.011 8 C -0.533 4.533 9 H 0.030 0.970 10 C 0.000 4.000 11 N -0.954 5.954 12 Si 0.954 3.046 13 H -0.265 1.265 14 H -0.285 1.285 15 H -0.245 1.245 16 C -0.096 4.096 17 H 0.135 0.865 18 C -0.126 4.126 19 C -0.004 4.004 20 Cl -0.099 7.099 21 Cl -0.103 7.103 22 H 0.062 0.938 23 H 0.081 0.919 24 H 0.052 0.948 25 H 0.346 0.654 26 H 0.071 0.929 27 H 0.031 0.969 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.266 0.734 33 H 0.135 0.865 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.111 2.875 26.090 26.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.004 3.996 3 H 0.101 0.899 4 N -0.314 5.314 5 C -0.057 4.057 6 C -0.129 4.129 7 C -0.049 4.049 8 C -0.571 4.571 9 H 0.048 0.952 10 C -0.196 4.196 11 N -0.595 5.595 12 Si 0.777 3.223 13 H -0.190 1.190 14 H -0.211 1.211 15 H -0.169 1.169 16 C -0.115 4.115 17 H 0.153 0.847 18 C -0.164 4.164 19 C -0.056 4.056 20 Cl -0.071 7.071 21 Cl -0.076 7.076 22 H 0.081 0.919 23 H 0.099 0.901 24 H 0.071 0.929 25 H 0.165 0.835 26 H 0.090 0.910 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.153 0.847 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.519 2.997 26.194 26.936 hybrid contribution -1.082 0.439 -0.751 1.389 sum -6.602 3.436 25.443 26.509 Atomic orbital electron populations 1.22781 0.96051 1.02984 1.03627 1.21114 0.93306 0.97099 0.88113 0.89910 1.60441 1.57564 1.09958 1.03472 1.21892 0.99228 0.95187 0.89415 1.21262 1.00442 0.97963 0.93222 1.19494 0.96209 0.95813 0.93348 1.21545 1.43395 0.97074 0.95106 0.95199 1.26082 0.94508 1.03801 0.95210 1.70083 1.48699 1.39062 1.01644 0.85607 0.79933 0.79043 0.77733 1.19049 1.21109 1.16856 1.23174 0.98843 1.01855 0.87657 0.84723 1.24183 0.89290 1.04519 0.98378 1.26979 0.98415 0.87541 0.92659 1.98724 1.71033 1.39540 1.97849 1.98750 1.96793 1.60299 1.51777 0.91938 0.90072 0.92902 0.83499 0.91033 0.95050 0.93506 0.93080 0.96222 0.96296 0.92538 0.84705 0.85543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.60 8.90 71.98 0.64 -2.96 16 2 C 0.11 2.14 2.29 44.92 0.10 2.25 16 3 H 0.08 1.61 7.56 -2.39 -0.02 1.60 16 4 N -0.68 -15.94 6.25 -491.57 -3.07 -19.01 16 5 C 0.07 2.05 5.48 86.30 0.47 2.52 16 6 C -0.09 -3.43 5.41 30.60 0.17 -3.26 16 7 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 8 C -0.53 -31.05 9.66 25.60 0.25 -30.80 16 9 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 10 C 0.00 0.02 5.47 84.66 0.46 0.48 16 11 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 12 Si 0.95 44.25 27.47 68.60 1.88 46.13 16 13 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 14 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 15 H -0.25 -10.46 6.54 99.48 0.65 -9.81 16 16 C -0.10 -1.51 5.29 -10.80 -0.06 -1.57 16 17 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 18 C -0.13 -1.65 9.86 30.62 0.30 -1.35 16 19 C 0.00 -0.06 3.47 30.62 0.11 0.04 16 20 Cl -0.10 -1.69 25.47 -2.72 -0.07 -1.76 16 21 Cl -0.10 -1.70 29.29 -2.72 -0.08 -1.78 16 22 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 23 H 0.08 1.44 4.75 -2.39 -0.01 1.43 16 24 H 0.05 1.05 7.45 -2.39 -0.02 1.03 16 25 H 0.35 7.70 8.47 -89.69 -0.76 6.94 16 26 H 0.07 2.01 8.06 -2.39 -0.02 1.99 16 27 H 0.03 0.88 7.44 -2.38 -0.02 0.86 16 28 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 31 H 0.02 0.85 7.20 -2.38 -0.02 0.83 16 32 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 33 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.13 1.53 8.05 -2.39 -0.02 1.52 16 Total: -1.00 -64.50 306.61 1.80 -62.69 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 0.28 Total: 8.94 kcal Atomic # 6 Polarization: -37.58 SS G_CDS: 2.56 Total: -35.02 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -2.77 Total: -79.22 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.13 kcal Atomic # 17 Polarization: -3.38 SS G_CDS: -0.15 Total: -3.53 kcal Total: -64.50 1.80 -62.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308657080.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.302 kcal (2) G-P(sol) polarization free energy of solvation -64.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds