Wall clock time and date at job start Mon Mar 30 2020 06:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 5 5 C 1.46901 * 110.99870 * 85.00132 * 4 2 1 6 6 C 1.53004 * 109.46916 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.46700 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46820 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00070 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00019 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00228 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 120.00068 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46685 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46910 * 120.00333 * 12 10 8 15 15 H 1.48502 * 109.47120 * 240.00671 * 12 10 8 16 16 C 1.52996 * 109.47194 * 120.00416 * 2 1 3 17 17 H 1.08996 * 115.55509 * 85.66728 * 16 2 1 18 18 C 1.53009 * 117.49432 * 299.99691 * 16 2 1 19 19 C 1.52995 * 60.00058 * 252.51035 * 18 16 2 20 20 Cl 1.80300 * 117.50320 * 252.50856 * 19 18 16 21 21 Cl 1.80309 * 117.49717 * 107.48976 * 19 18 16 22 22 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 23 23 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 24 24 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 25 25 H 1.00901 * 110.99869 * 321.04843 * 4 2 1 26 26 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 27 27 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 28 28 H 1.08995 * 109.46615 * 299.99641 * 6 5 4 29 29 H 1.08996 * 109.46939 * 60.00272 * 6 5 4 30 30 H 1.08993 * 109.47740 * 299.99810 * 7 6 5 31 31 H 1.09005 * 109.47573 * 59.99976 * 7 6 5 32 32 H 0.97002 * 120.00555 * 179.97438 * 11 10 8 33 33 H 1.08992 * 117.49818 * 0.02562 * 18 16 2 34 34 H 1.09004 * 117.49563 * 145.02429 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5951 -0.5332 -3.5745 7 6 2.6599 0.4198 -4.7697 8 6 3.1653 -0.3244 -5.9787 9 1 3.4149 -1.3724 -5.9023 10 6 3.3081 0.3323 -7.1826 11 7 3.0037 1.6084 -7.2758 12 14 3.9340 -0.5904 -8.6815 13 1 4.2026 -2.0043 -8.3156 14 1 2.9092 -0.5434 -9.7552 15 1 5.1871 0.0429 -9.1650 16 6 2.0400 -0.7213 1.2491 17 1 2.1267 -1.8045 1.1642 18 6 1.6357 -0.1495 2.6096 19 6 3.0741 0.0051 2.1117 20 17 4.3436 -0.9961 2.9097 21 17 3.5985 1.6456 1.5781 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.4495 -1.4979 -1.4101 26 1 1.0871 0.6163 -2.5526 27 1 2.7589 1.0462 -2.1182 28 1 3.5904 -0.9271 -3.3691 29 1 1.9183 -1.3564 -3.8030 30 1 1.6645 0.8136 -4.9749 31 1 3.3364 1.2435 -4.5415 32 1 3.1045 2.0705 -8.1226 33 1 1.0061 0.7402 2.6145 34 1 1.4569 -0.8566 3.4196 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308657081.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:35 Heat of formation + Delta-G solvation = -26.396609 kcal Electronic energy + Delta-G solvation = -15587.626525 eV Core-core repulsion = 12799.532902 eV Total energy + Delta-G solvation = -2788.093623 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 265.070 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.78411 -37.70746 -36.96950 -36.42543 -35.26115 -33.30042 -30.39457 -27.70786 -25.32947 -23.77512 -23.01346 -22.14022 -20.98875 -18.49084 -17.58786 -16.81176 -16.50893 -16.31866 -15.48903 -15.21773 -14.53412 -14.30938 -14.04686 -13.75049 -13.56112 -13.33287 -13.14010 -12.83722 -12.71298 -12.66552 -12.45606 -12.29089 -12.09389 -12.04554 -11.58366 -11.51986 -11.44770 -11.30670 -11.01313 -10.67931 -10.55456 -9.31158 -8.19824 -6.30727 0.27448 1.23841 1.40153 1.40736 1.54261 2.28538 2.41448 3.02950 3.13430 3.21272 3.73265 3.92969 4.17430 4.27971 4.30368 4.47269 4.49999 4.65189 4.72109 4.76403 4.91211 5.00746 5.09143 5.19050 5.25630 5.28951 5.53422 5.76452 5.86847 6.07929 6.27976 6.55077 6.86590 7.38642 8.92346 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.029669 B = 0.003528 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.534054 B = 7934.161170 C = 8138.284694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 H 0.078 0.922 4 N -0.684 5.684 5 C 0.078 3.922 6 C -0.092 4.092 7 C 0.024 3.976 8 C -0.542 4.542 9 H 0.059 0.941 10 C -0.002 4.002 11 N -0.934 5.934 12 Si 0.965 3.035 13 H -0.262 1.262 14 H -0.277 1.277 15 H -0.279 1.279 16 C -0.096 4.096 17 H 0.136 0.864 18 C -0.116 4.116 19 C -0.014 4.014 20 Cl -0.109 7.109 21 Cl -0.111 7.111 22 H 0.081 0.919 23 H 0.048 0.952 24 H 0.072 0.928 25 H 0.348 0.652 26 H 0.027 0.973 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.053 0.947 30 H -0.008 1.008 31 H -0.012 1.012 32 H 0.263 0.737 33 H 0.132 0.868 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.336 -4.653 23.030 24.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.012 4.012 3 H 0.096 0.904 4 N -0.315 5.315 5 C -0.052 4.052 6 C -0.130 4.130 7 C -0.013 4.013 8 C -0.580 4.580 9 H 0.078 0.922 10 C -0.199 4.199 11 N -0.575 5.575 12 Si 0.790 3.210 13 H -0.186 1.186 14 H -0.202 1.202 15 H -0.204 1.204 16 C -0.116 4.116 17 H 0.154 0.846 18 C -0.154 4.154 19 C -0.065 4.065 20 Cl -0.082 7.082 21 Cl -0.084 7.084 22 H 0.100 0.900 23 H 0.067 0.933 24 H 0.091 0.909 25 H 0.167 0.833 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.011 0.989 31 H 0.006 0.994 32 H 0.072 0.928 33 H 0.150 0.850 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.521 -4.384 23.100 23.943 hybrid contribution -0.149 0.233 -1.264 1.294 sum -4.671 -4.151 21.836 22.712 Atomic orbital electron populations 1.22388 0.94563 1.03400 1.02890 1.21304 0.94137 0.97548 0.88168 0.90368 1.60421 1.57765 1.09912 1.03428 1.21771 0.98543 0.94976 0.89865 1.21364 1.00220 0.98068 0.93334 1.18977 0.94793 0.94487 0.93064 1.21735 1.43615 0.96891 0.95716 0.92232 1.25993 0.95678 0.95771 1.02466 1.70105 1.49976 1.10727 1.26679 0.85395 0.77978 0.79030 0.78626 1.18562 1.20218 1.20446 1.23198 0.95398 1.00945 0.92061 0.84599 1.24210 0.88899 1.04853 0.97389 1.27083 0.86889 0.84998 1.07528 1.98741 1.58363 1.69801 1.81289 1.98747 1.92168 1.26638 1.90894 0.90017 0.93298 0.90854 0.83303 0.95511 0.92851 0.93197 0.92781 0.98945 0.99363 0.92796 0.84954 0.83851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 9.00 71.98 0.65 -2.17 16 2 C 0.10 2.03 2.71 44.91 0.12 2.15 16 3 H 0.08 1.88 5.78 -2.39 -0.01 1.86 16 4 N -0.68 -18.06 6.25 -491.55 -3.07 -21.13 16 5 C 0.08 2.64 5.48 86.30 0.47 3.11 16 6 C -0.09 -3.83 5.41 30.59 0.17 -3.67 16 7 C 0.02 1.32 4.97 29.85 0.15 1.47 16 8 C -0.54 -31.49 9.11 25.60 0.23 -31.26 16 9 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 10 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 11 N -0.93 -57.76 13.29 21.45 0.28 -57.47 16 12 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 13 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 14 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 15 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 16 C -0.10 -1.61 5.30 -10.79 -0.06 -1.66 16 17 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 18 C -0.12 -1.33 9.42 30.60 0.29 -1.04 16 19 C -0.01 -0.26 3.62 30.59 0.11 -0.15 16 20 Cl -0.11 -2.21 29.29 -2.72 -0.08 -2.29 16 21 Cl -0.11 -2.60 27.29 -2.72 -0.07 -2.67 16 22 H 0.08 0.98 7.29 -2.39 -0.02 0.97 16 23 H 0.05 0.95 7.45 -2.39 -0.02 0.93 16 24 H 0.07 1.02 8.13 -2.39 -0.02 1.00 16 25 H 0.35 8.15 8.47 -89.69 -0.76 7.39 16 26 H 0.03 0.90 7.44 -2.39 -0.02 0.88 16 27 H 0.05 1.96 8.05 -2.39 -0.02 1.94 16 28 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 30 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 31 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 32 H 0.26 15.21 8.31 -92.71 -0.77 14.43 16 33 H 0.13 1.21 7.61 -2.39 -0.02 1.19 16 34 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -66.01 312.57 2.01 -64.00 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: 0.33 Total: 5.49 kcal Atomic # 6 Polarization: -35.44 SS G_CDS: 2.59 Total: -32.85 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -2.79 Total: -78.61 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 17 Polarization: -4.81 SS G_CDS: -0.15 Total: -4.96 kcal Total: -66.01 2.01 -64.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308657081.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.602 kcal (2) G-P(sol) polarization free energy of solvation -66.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds