Wall clock time and date at job start Mon Mar 30 2020 06:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47643 * 2 1 4 4 N 1.46899 * 109.47169 * 119.99795 * 2 1 3 5 5 C 1.46893 * 111.00557 * 275.00061 * 4 2 1 6 6 C 1.52997 * 109.47638 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47535 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.46997 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00319 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99717 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99913 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99766 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47353 * 269.99586 * 12 10 8 14 14 H 1.48501 * 109.47293 * 30.00037 * 12 10 8 15 15 H 1.48504 * 109.46680 * 149.99835 * 12 10 8 16 16 C 1.53003 * 109.47248 * 240.00357 * 2 1 3 17 17 H 1.09001 * 115.54634 * 274.33156 * 16 2 1 18 18 C 1.52988 * 117.50028 * 59.99899 * 16 2 1 19 19 C 1.52997 * 60.00255 * 107.49394 * 18 16 2 20 20 Cl 1.80304 * 117.49761 * 252.51247 * 19 18 16 21 21 Cl 1.80295 * 117.50149 * 107.48856 * 19 18 16 22 22 H 1.08997 * 109.47223 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47288 * 300.00369 * 1 2 3 24 24 H 1.09007 * 109.47414 * 59.99823 * 1 2 3 25 25 H 1.00907 * 111.00122 * 151.04483 * 4 2 1 26 26 H 1.09005 * 109.46920 * 59.99721 * 5 4 2 27 27 H 1.09004 * 109.47361 * 300.00031 * 5 4 2 28 28 H 1.09005 * 109.46889 * 60.00074 * 6 5 4 29 29 H 1.09002 * 109.47401 * 300.00163 * 6 5 4 30 30 H 1.09005 * 109.46767 * 60.00250 * 7 6 5 31 31 H 1.09002 * 109.47113 * 300.00590 * 7 6 5 32 32 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 33 33 H 1.09005 * 117.49984 * 214.98598 * 18 16 2 34 34 H 1.09007 * 117.49872 * 359.97438 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 2.0824 0.2225 2.3469 6 6 2.5950 -0.5332 3.5745 7 6 2.6610 0.4200 4.7695 8 6 3.1653 -0.3246 5.9787 9 1 3.4142 -1.3728 5.9024 10 6 3.3089 0.3323 7.1824 11 7 3.7494 -0.3174 8.2376 12 14 2.8776 2.1450 7.3144 13 1 4.0785 2.9632 7.0083 14 1 1.7983 2.4688 6.3471 15 1 2.4131 2.4442 8.6928 16 6 2.0400 -0.7212 -1.2493 17 1 2.1266 -1.8044 -1.1643 18 6 1.6357 -0.1494 -2.6095 19 6 3.0742 0.0052 -2.1117 20 17 3.5986 1.6457 -1.5780 21 17 4.3435 -0.9960 -2.9097 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 2.9173 -1.1205 1.0287 26 1 1.0870 0.6163 2.5525 27 1 2.7588 1.0462 2.1183 28 1 3.5904 -0.9272 3.3691 29 1 1.9183 -1.3566 3.8030 30 1 1.6658 0.8144 4.9750 31 1 3.3379 1.2432 4.5407 32 1 3.8508 0.1449 9.0844 33 1 1.4568 -0.8565 -3.4196 34 1 1.0060 0.7403 -2.6145 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308657082.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:36 Heat of formation + Delta-G solvation = -4.593131 kcal Electronic energy + Delta-G solvation = -15647.445613 eV Core-core repulsion = 12860.297459 eV Total energy + Delta-G solvation = -2787.148154 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 265.070 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.10390 -36.73143 -36.31954 -35.41552 -33.46583 -31.70678 -29.49798 -26.53360 -24.10698 -22.50024 -21.81468 -20.63067 -19.83339 -17.09953 -16.71338 -15.90685 -15.39964 -14.57806 -14.10754 -14.05087 -13.70904 -13.13641 -12.81378 -12.63738 -12.51228 -12.18782 -11.97642 -11.89179 -11.61889 -11.45713 -11.32691 -10.98052 -10.87673 -10.76953 -10.65536 -10.05044 -9.92160 -9.70646 -9.54875 -9.14597 -8.50932 -8.29269 -6.01348 -3.98892 0.86560 1.85413 2.81235 3.32414 3.39626 3.43446 3.73153 3.84590 4.44816 4.47739 4.52940 4.90369 5.09383 5.14585 5.28623 5.32669 5.50668 5.63582 5.72379 5.78300 5.87947 6.13740 6.24051 6.56202 6.59800 6.93769 7.18189 7.37278 7.44712 7.53651 7.83261 8.58025 9.04393 9.61416 11.12286 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.028588 B = 0.003761 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.195448 B = 7443.970305 C = 7540.160306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.101 3.899 3 H 0.059 0.941 4 N -0.681 5.681 5 C 0.057 3.943 6 C -0.099 4.099 7 C -0.013 4.013 8 C -0.518 4.518 9 H 0.072 0.928 10 C 0.065 3.935 11 N -0.905 5.905 12 Si 0.880 3.120 13 H -0.278 1.278 14 H -0.266 1.266 15 H -0.288 1.288 16 C -0.113 4.113 17 H 0.137 0.863 18 C -0.137 4.137 19 C -0.006 4.006 20 Cl -0.089 7.089 21 Cl -0.096 7.096 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.341 0.659 26 H 0.067 0.933 27 H 0.025 0.975 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.015 0.985 31 H 0.009 0.991 32 H 0.262 0.738 33 H 0.122 0.878 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.833 1.547 -25.190 25.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.009 4.009 3 H 0.077 0.923 4 N -0.313 5.313 5 C -0.071 4.071 6 C -0.137 4.137 7 C -0.051 4.051 8 C -0.556 4.556 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.544 5.544 12 Si 0.707 3.293 13 H -0.204 1.204 14 H -0.190 1.190 15 H -0.214 1.214 16 C -0.133 4.133 17 H 0.154 0.846 18 C -0.175 4.175 19 C -0.057 4.057 20 Cl -0.062 7.062 21 Cl -0.069 7.069 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.159 0.841 26 H 0.086 0.914 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.034 0.966 31 H 0.027 0.973 32 H 0.072 0.928 33 H 0.140 0.860 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.260 1.382 -24.846 25.434 hybrid contribution 0.922 1.544 -0.072 1.799 sum -4.338 2.925 -24.917 25.461 Atomic orbital electron populations 1.21743 0.93564 1.02712 1.01428 1.21299 0.96414 0.96159 0.87076 0.92291 1.60650 1.33445 1.33576 1.03601 1.22197 1.00480 0.93770 0.90661 1.21439 1.00086 0.99112 0.93064 1.19541 0.96421 0.95228 0.93883 1.21155 1.43449 0.98307 0.92717 0.91018 1.25041 0.94687 0.98086 0.95754 1.69921 1.46958 1.36593 1.00935 0.86775 0.79287 0.85962 0.77233 1.20378 1.19040 1.21406 1.23535 0.95627 1.01239 0.92872 0.84566 1.23958 0.91136 1.04373 0.98013 1.26919 0.86548 0.85912 1.06348 1.98757 1.91829 1.25084 1.90482 1.98755 1.57378 1.69495 1.81260 0.91651 0.91960 0.92806 0.84091 0.91416 0.95642 0.93024 0.91891 0.96647 0.97315 0.92794 0.86032 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.25 37.15 0.34 -0.97 16 2 C 0.10 1.07 2.74 -67.72 -0.19 0.88 16 3 H 0.06 0.68 5.78 -51.93 -0.30 0.38 16 4 N -0.68 -9.01 6.31 -106.73 -0.67 -9.68 16 5 C 0.06 0.92 5.48 -3.83 -0.02 0.90 16 6 C -0.10 -1.97 5.41 -26.73 -0.14 -2.11 16 7 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 8 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 9 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 10 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 11 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 12 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 C -0.11 -0.97 4.95 -90.63 -0.45 -1.42 16 17 H 0.14 1.13 8.14 -51.93 -0.42 0.71 16 18 C -0.14 -0.90 9.42 -26.74 -0.25 -1.16 16 19 C -0.01 -0.05 3.62 -26.73 -0.10 -0.15 16 20 Cl -0.09 -0.95 27.29 -51.86 -1.42 -2.36 16 21 Cl -0.10 -0.92 29.29 -51.86 -1.52 -2.44 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.67 7.45 -51.93 -0.39 0.29 16 24 H 0.05 0.41 7.29 -51.93 -0.38 0.03 16 25 H 0.34 4.39 8.36 -39.29 -0.33 4.07 16 26 H 0.07 1.08 7.44 -51.93 -0.39 0.70 16 27 H 0.03 0.41 8.06 -51.93 -0.42 -0.01 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 31 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 32 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 33 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.12 0.70 7.61 -51.92 -0.39 0.31 16 LS Contribution 308.86 15.07 4.65 4.65 Total: -1.00 -30.63 308.86 -9.26 -39.89 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -5.06 Total: -1.89 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -1.35 Total: -17.99 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.10 Total: -37.23 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -2.93 Total: -4.80 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.63 -9.26 -39.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308657082.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.297 kcal (2) G-P(sol) polarization free energy of solvation -30.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds