Wall clock time and date at job start Mon Mar 30 2020 06:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47643 * 2 1 4 4 N 1.46899 * 109.47169 * 119.99795 * 2 1 3 5 5 C 1.46893 * 111.00557 * 275.00061 * 4 2 1 6 6 C 1.52997 * 109.47638 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47535 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.46997 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00319 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99717 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99913 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99766 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47353 * 269.99586 * 12 10 8 14 14 H 1.48501 * 109.47293 * 30.00037 * 12 10 8 15 15 H 1.48504 * 109.46680 * 149.99835 * 12 10 8 16 16 C 1.53003 * 109.47248 * 240.00357 * 2 1 3 17 17 H 1.09001 * 115.54634 * 274.33156 * 16 2 1 18 18 C 1.52988 * 117.50028 * 59.99899 * 16 2 1 19 19 C 1.52997 * 60.00255 * 107.49394 * 18 16 2 20 20 Cl 1.80304 * 117.49761 * 252.51247 * 19 18 16 21 21 Cl 1.80295 * 117.50149 * 107.48856 * 19 18 16 22 22 H 1.08997 * 109.47223 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47288 * 300.00369 * 1 2 3 24 24 H 1.09007 * 109.47414 * 59.99823 * 1 2 3 25 25 H 1.00907 * 111.00122 * 151.04483 * 4 2 1 26 26 H 1.09005 * 109.46920 * 59.99721 * 5 4 2 27 27 H 1.09004 * 109.47361 * 300.00031 * 5 4 2 28 28 H 1.09005 * 109.46889 * 60.00074 * 6 5 4 29 29 H 1.09002 * 109.47401 * 300.00163 * 6 5 4 30 30 H 1.09005 * 109.46767 * 60.00250 * 7 6 5 31 31 H 1.09002 * 109.47113 * 300.00590 * 7 6 5 32 32 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 33 33 H 1.09005 * 117.49984 * 214.98598 * 18 16 2 34 34 H 1.09007 * 117.49872 * 359.97438 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 2.0824 0.2225 2.3469 6 6 2.5950 -0.5332 3.5745 7 6 2.6610 0.4200 4.7695 8 6 3.1653 -0.3246 5.9787 9 1 3.4142 -1.3728 5.9024 10 6 3.3089 0.3323 7.1824 11 7 3.7494 -0.3174 8.2376 12 14 2.8776 2.1450 7.3144 13 1 4.0785 2.9632 7.0083 14 1 1.7983 2.4688 6.3471 15 1 2.4131 2.4442 8.6928 16 6 2.0400 -0.7212 -1.2493 17 1 2.1266 -1.8044 -1.1643 18 6 1.6357 -0.1494 -2.6095 19 6 3.0742 0.0052 -2.1117 20 17 3.5986 1.6457 -1.5780 21 17 4.3435 -0.9960 -2.9097 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 2.9173 -1.1205 1.0287 26 1 1.0870 0.6163 2.5525 27 1 2.7588 1.0462 2.1183 28 1 3.5904 -0.9272 3.3691 29 1 1.9183 -1.3566 3.8030 30 1 1.6658 0.8144 4.9750 31 1 3.3379 1.2432 4.5407 32 1 3.8508 0.1449 9.0844 33 1 1.4568 -0.8565 -3.4196 34 1 1.0060 0.7403 -2.6145 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308657082.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:36 Heat of formation + Delta-G solvation = -23.380176 kcal Electronic energy + Delta-G solvation = -15648.260280 eV Core-core repulsion = 12860.297459 eV Total energy + Delta-G solvation = -2787.962821 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 265.070 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.85874 -37.69141 -37.04855 -36.48538 -35.18268 -33.46038 -30.73620 -28.09094 -25.24483 -23.37039 -23.02941 -21.99199 -20.96668 -18.90010 -17.87783 -16.80762 -16.46016 -16.32632 -15.51502 -15.09833 -14.88175 -14.66604 -13.87545 -13.84591 -13.57839 -13.34559 -13.18742 -12.84100 -12.70861 -12.63593 -12.44818 -12.20741 -12.09925 -11.82675 -11.73288 -11.59962 -11.40371 -11.35292 -11.18191 -10.76184 -10.72623 -9.35918 -8.29189 -6.33320 0.18162 1.15611 1.35635 1.37583 1.49877 2.18823 2.36493 2.95932 3.06118 3.15890 3.61636 3.78318 4.20541 4.24578 4.29317 4.49368 4.57397 4.63548 4.68701 4.81573 4.88651 4.95876 5.04397 5.09315 5.15435 5.43608 5.53270 5.61743 5.67090 6.10425 6.30157 6.44747 6.75032 7.31255 8.87905 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.028588 B = 0.003761 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.195448 B = 7443.970305 C = 7540.160306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.101 3.899 3 H 0.054 0.946 4 N -0.684 5.684 5 C 0.072 3.928 6 C -0.090 4.090 7 C -0.010 4.010 8 C -0.533 4.533 9 H 0.030 0.970 10 C 0.002 3.998 11 N -0.953 5.953 12 Si 0.953 3.047 13 H -0.267 1.267 14 H -0.245 1.245 15 H -0.283 1.283 16 C -0.116 4.116 17 H 0.140 0.860 18 C -0.110 4.110 19 C -0.018 4.018 20 Cl -0.108 7.108 21 Cl -0.105 7.105 22 H 0.064 0.936 23 H 0.048 0.952 24 H 0.078 0.922 25 H 0.342 0.658 26 H 0.071 0.929 27 H 0.026 0.974 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.021 0.979 31 H 0.016 0.984 32 H 0.266 0.734 33 H 0.144 0.856 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.165 3.029 -27.232 28.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.009 4.009 3 H 0.072 0.928 4 N -0.316 5.316 5 C -0.057 4.057 6 C -0.128 4.128 7 C -0.048 4.048 8 C -0.571 4.571 9 H 0.048 0.952 10 C -0.195 4.195 11 N -0.594 5.594 12 Si 0.776 3.224 13 H -0.192 1.192 14 H -0.168 1.168 15 H -0.209 1.209 16 C -0.135 4.135 17 H 0.158 0.842 18 C -0.148 4.148 19 C -0.069 4.069 20 Cl -0.081 7.081 21 Cl -0.077 7.077 22 H 0.083 0.917 23 H 0.067 0.933 24 H 0.097 0.903 25 H 0.160 0.840 26 H 0.090 0.910 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.039 0.961 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.161 0.839 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.598 2.853 -26.917 27.860 hybrid contribution 1.359 0.956 0.558 1.753 sum -5.239 3.809 -26.359 27.143 Atomic orbital electron populations 1.21741 0.92606 1.02847 1.02028 1.21334 0.97065 0.95791 0.86684 0.92839 1.60603 1.33591 1.33257 1.04118 1.21892 1.00312 0.93439 0.90033 1.21258 0.99770 0.98276 0.93527 1.19490 0.96266 0.95657 0.93405 1.21524 1.43511 0.97038 0.95070 0.95208 1.26062 0.94465 1.03756 0.95168 1.70080 1.48484 1.39045 1.01776 0.85622 0.79889 0.79052 0.77863 1.19249 1.16832 1.20859 1.23442 0.95895 1.01169 0.92987 0.84209 1.24156 0.88870 1.04815 0.96962 1.27133 0.87181 0.85039 1.07546 1.98754 1.92105 1.26461 1.90759 1.98754 1.58044 1.69631 1.81319 0.91725 0.93297 0.90318 0.83987 0.91034 0.95573 0.93698 0.93011 0.96073 0.96585 0.92504 0.83850 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.25 71.98 0.67 -1.57 16 2 C 0.10 1.92 2.74 44.91 0.12 2.04 16 3 H 0.05 1.12 5.78 -2.39 -0.01 1.10 16 4 N -0.68 -17.12 6.31 -491.59 -3.10 -20.23 16 5 C 0.07 2.22 5.48 86.30 0.47 2.69 16 6 C -0.09 -3.57 5.41 30.59 0.17 -3.40 16 7 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 8 C -0.53 -31.64 9.66 25.60 0.25 -31.39 16 9 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 10 C 0.00 0.11 5.47 84.66 0.46 0.58 16 11 N -0.95 -61.03 13.96 21.45 0.30 -60.73 16 12 Si 0.95 44.95 27.47 68.60 1.88 46.84 16 13 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 14 H -0.24 -10.66 6.54 99.48 0.65 -10.01 16 15 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 16 C -0.12 -1.69 4.95 -10.80 -0.05 -1.75 16 17 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 18 C -0.11 -1.08 9.42 30.59 0.29 -0.80 16 19 C -0.02 -0.28 3.62 30.59 0.11 -0.17 16 20 Cl -0.11 -2.15 27.29 -2.72 -0.07 -2.22 16 21 Cl -0.10 -1.85 29.29 -2.72 -0.08 -1.93 16 22 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.05 0.95 7.45 -2.39 -0.02 0.93 16 24 H 0.08 0.91 7.29 -2.38 -0.02 0.89 16 25 H 0.34 8.45 8.36 -89.69 -0.75 7.70 16 26 H 0.07 2.15 7.44 -2.38 -0.02 2.14 16 27 H 0.03 0.80 8.06 -2.38 -0.02 0.78 16 28 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.02 0.98 7.20 -2.38 -0.02 0.96 16 31 H 0.02 0.74 7.57 -2.39 -0.02 0.72 16 32 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 33 H 0.14 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.13 1.01 7.61 -2.38 -0.02 1.00 16 Total: -1.00 -67.00 308.86 1.82 -65.19 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 0.28 Total: 7.22 kcal Atomic # 6 Polarization: -36.74 SS G_CDS: 2.60 Total: -34.14 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -2.80 Total: -80.95 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.84 kcal Atomic # 17 Polarization: -4.00 SS G_CDS: -0.15 Total: -4.15 kcal Total: -67.00 1.82 -65.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308657082.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.807 kcal (2) G-P(sol) polarization free energy of solvation -67.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds