Wall clock time and date at job start Mon Mar 30 2020 06:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31952 * 119.44032 * 2 1 4 4 C 1.31788 * 121.86562 * 180.26519 * 3 2 1 5 5 Cl 1.73603 * 119.74132 * 179.75328 * 4 3 2 6 6 C 1.39803 * 120.51521 * 359.72981 * 4 3 2 7 7 C 1.43200 * 120.57341 * 179.97438 * 6 4 3 8 8 N 4.75162 * 139.64754 * 0.30382 * 3 1 2 9 9 C 1.40005 * 118.85122 * 0.02562 * 6 4 3 10 10 C 1.50706 * 120.85032 * 179.97438 * 9 6 4 11 11 C 1.38294 * 119.44017 * 179.73654 * 2 1 3 12 12 C 1.50697 * 120.32793 * 0.02562 * 11 2 1 13 13 H 1.09007 * 109.46899 * 335.66596 * 12 11 2 14 14 N 1.46904 * 109.47130 * 215.67388 * 12 11 2 15 15 C 1.50700 * 109.47443 * 95.67158 * 12 11 2 16 16 H 1.07995 * 119.99828 * 359.97438 * 15 12 11 17 17 C 1.37871 * 119.99841 * 180.02562 * 15 12 11 18 18 N 1.31515 * 120.00668 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99956 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.47279 * 89.99403 * 19 17 15 21 21 H 1.48496 * 109.47204 * 209.99879 * 19 17 15 22 22 H 1.48508 * 109.46740 * 329.99893 * 19 17 15 23 23 H 1.08997 * 109.46998 * 264.05961 * 1 2 3 24 24 H 1.08998 * 109.47258 * 24.06150 * 1 2 3 25 25 H 1.09001 * 109.46907 * 144.05951 * 1 2 3 26 26 H 1.09002 * 109.46735 * 242.59675 * 10 9 6 27 27 H 1.08997 * 109.46888 * 2.59049 * 10 9 6 28 28 H 1.08993 * 109.47449 * 122.59913 * 10 9 6 29 29 H 1.00904 * 110.99695 * 263.37768 * 14 12 11 30 30 H 1.00894 * 110.99989 * 27.32449 * 14 12 11 31 31 H 0.96995 * 120.00472 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1555 1.1491 0.0000 4 6 3.4722 1.2049 -0.0052 5 17 4.2689 2.7474 -0.0114 6 6 4.2324 0.0316 -0.0052 7 6 5.6632 0.0908 -0.0114 8 7 6.7982 0.1377 -0.0163 9 6 3.5707 -1.2021 -0.0002 10 6 4.3456 -2.4947 -0.0007 11 6 2.1867 -1.2043 0.0055 12 6 1.4279 -2.5064 0.0109 13 1 0.4358 -2.3469 0.4333 14 7 2.1532 -3.4924 0.8233 15 6 1.2968 -3.0173 -1.4007 16 1 1.7202 -2.4552 -2.2199 17 6 0.6355 -4.2018 -1.6464 18 7 0.1194 -4.8861 -0.6489 19 14 0.4723 -4.8349 -3.3964 20 1 1.6326 -5.7038 -3.7186 21 1 -0.7831 -5.6176 -3.5246 22 1 0.4378 -3.6862 -4.3370 23 1 -0.3633 -0.1064 1.0221 24 1 -0.3634 0.9383 -0.4190 25 1 -0.3633 -0.8320 -0.6032 26 1 4.1232 -3.0513 -0.9111 27 1 5.4130 -2.2784 0.0412 28 1 4.0609 -3.0893 0.8673 29 1 2.7265 -4.0869 0.2436 30 1 2.7066 -3.0383 1.5342 31 1 -0.3455 -5.7197 -0.8218 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309237766.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:57 Heat of formation + Delta-G solvation = 52.335052 kcal Electronic energy + Delta-G solvation = -17680.623859 eV Core-core repulsion = 14794.836802 eV Total energy + Delta-G solvation = -2885.787056 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.94788 -38.25189 -37.90002 -37.17887 -35.02788 -33.90921 -32.00137 -29.91120 -29.01098 -27.51202 -24.99315 -23.29572 -22.35526 -19.58861 -18.66929 -18.29352 -17.25341 -16.76088 -16.32881 -15.79951 -15.18982 -14.75071 -14.65923 -14.49057 -14.36020 -13.90604 -13.77921 -13.72115 -13.69819 -13.42956 -12.97317 -12.85044 -12.68818 -12.49082 -12.41076 -12.36524 -11.90623 -11.44310 -10.85077 -10.56408 -10.49288 -9.74611 -8.69636 -8.01045 -6.21916 -0.66812 -0.03740 0.50260 1.39638 1.46131 1.52227 1.57550 1.73605 2.44948 2.53401 2.59179 3.21179 3.25136 3.54892 3.72933 3.95239 4.14152 4.37274 4.48264 4.54770 4.66892 4.84052 4.92547 4.99319 5.01634 5.24131 5.47618 5.70438 5.78405 6.06975 6.19977 6.54328 6.65094 7.06155 7.33006 7.50848 9.00799 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.024105 B = 0.006450 C = 0.005859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.305655 B = 4339.749705 C = 4777.565327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.173 3.827 3 N -0.487 5.487 4 C 0.205 3.795 5 Cl -0.016 7.016 6 C -0.084 4.084 7 C 0.281 3.719 8 N -0.425 5.425 9 C 0.020 3.980 10 C -0.134 4.134 11 C -0.131 4.131 12 C 0.268 3.732 13 H 0.043 0.957 14 N -0.831 5.831 15 C -0.546 4.546 16 H 0.048 0.952 17 C 0.048 3.952 18 N -0.874 5.874 19 Si 0.936 3.064 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.275 1.275 23 H 0.096 0.904 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.340 0.660 30 H 0.316 0.684 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.576 7.771 1.899 8.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.036 3.964 3 N -0.199 5.199 4 C 0.036 3.964 5 Cl 0.012 6.988 6 C -0.091 4.091 7 C -0.035 4.035 8 N -0.101 5.101 9 C 0.010 3.990 10 C -0.191 4.191 11 C -0.135 4.135 12 C 0.157 3.843 13 H 0.061 0.939 14 N -0.366 5.366 15 C -0.585 4.585 16 H 0.067 0.933 17 C -0.158 4.158 18 N -0.509 5.509 19 Si 0.763 3.237 20 H -0.205 1.205 21 H -0.214 1.214 22 H -0.200 1.200 23 H 0.114 0.886 24 H 0.108 0.892 25 H 0.104 0.896 26 H 0.109 0.891 27 H 0.085 0.915 28 H 0.129 0.871 29 H 0.156 0.844 30 H 0.132 0.868 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.086 8.298 2.176 9.502 hybrid contribution 0.759 -0.454 -1.377 1.636 sum 4.845 7.844 0.799 9.254 Atomic orbital electron populations 1.20879 0.86294 1.04535 1.04394 1.21592 0.98360 0.85921 0.90488 1.66963 1.07103 1.30231 1.15591 1.21581 0.89755 0.86603 0.98425 1.98403 1.76747 1.27357 1.96277 1.16419 0.85356 0.93408 1.13931 1.25003 0.91877 0.93251 0.93340 1.81200 1.11785 1.07685 1.09457 1.20332 0.93360 0.94084 0.91241 1.21545 0.98407 0.93402 1.05734 1.22126 0.93589 0.99791 0.97986 1.17925 0.92119 0.81642 0.92565 0.93946 1.59194 1.35747 1.23769 1.17848 1.21105 1.38171 1.07213 0.91978 0.93336 1.25463 0.94448 0.96920 0.98924 1.70177 1.34664 1.14654 1.31407 0.85925 0.77364 0.78343 0.82087 1.20467 1.21373 1.20009 0.88570 0.89216 0.89590 0.89102 0.91547 0.87068 0.84443 0.86771 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.01 9.12 71.23 0.65 -2.36 16 2 C 0.17 5.72 6.78 42.55 0.29 6.01 16 3 N -0.49 -15.76 10.24 -173.74 -1.78 -17.54 16 4 C 0.21 6.35 7.31 85.08 0.62 6.97 16 5 Cl -0.02 -0.45 28.19 -2.72 -0.08 -0.52 16 6 C -0.08 -2.58 5.75 -21.23 -0.12 -2.70 16 7 C 0.28 8.51 12.76 88.33 1.13 9.63 16 8 N -0.43 -13.54 18.54 19.00 0.35 -13.18 16 9 C 0.02 0.62 5.67 -19.40 -0.11 0.51 16 10 C -0.13 -3.83 8.03 71.24 0.57 -3.26 16 11 C -0.13 -4.57 4.72 -19.81 -0.09 -4.67 16 12 C 0.27 10.88 2.20 43.42 0.10 10.98 16 13 H 0.04 1.92 6.50 -2.38 -0.02 1.90 16 14 N -0.83 -32.05 7.88 -174.94 -1.38 -33.42 16 15 C -0.55 -25.04 8.13 25.60 0.21 -24.83 16 16 H 0.05 2.28 7.74 -2.91 -0.02 2.26 16 17 C 0.05 2.27 5.35 84.65 0.45 2.73 16 18 N -0.87 -44.38 12.77 21.45 0.27 -44.10 16 19 Si 0.94 38.95 29.54 68.60 2.03 40.97 16 20 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 21 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 23 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 24 H 0.09 2.26 8.14 -2.39 -0.02 2.25 16 25 H 0.09 2.81 6.86 -2.39 -0.02 2.79 16 26 H 0.09 2.83 7.66 -2.39 -0.02 2.81 16 27 H 0.07 1.74 6.59 -2.39 -0.02 1.72 16 28 H 0.11 2.99 4.61 -2.39 -0.01 2.98 16 29 H 0.34 13.28 6.45 -89.69 -0.58 12.70 16 30 H 0.32 10.42 6.27 -89.70 -0.56 9.86 16 31 H 0.26 12.82 8.31 -92.71 -0.77 12.05 16 Total: -1.00 -51.04 281.57 3.18 -47.86 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.07 Total: 20.92 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 3.69 Total: -0.99 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -2.53 Total: -108.25 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.97 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -0.08 Total: -0.52 kcal Total: -51.04 3.18 -47.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309237766.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.197 kcal (2) G-P(sol) polarization free energy of solvation -51.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds