Wall clock time and date at job start Mon Mar 30 2020 06:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99888 * 2 1 4 4 H 1.48501 * 109.46795 * 269.99591 * 3 2 1 5 5 H 1.48499 * 109.47196 * 29.99510 * 3 2 1 6 6 H 1.48496 * 109.47386 * 149.99729 * 3 2 1 7 7 C 1.37869 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00523 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00098 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47142 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46740 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.46885 * 179.97438 * 11 10 9 13 13 C 1.45765 * 118.72510 * 270.02235 * 12 11 10 14 14 C 1.52843 * 112.24221 * 138.86644 * 13 12 11 15 15 C 1.51404 * 108.71059 * 46.92048 * 14 13 12 16 16 S 1.69868 * 127.49073 * 150.69593 * 15 14 13 17 17 C 1.75534 * 92.57620 * 179.24666 * 16 15 14 18 18 C 1.32788 * 110.65530 * 0.42082 * 17 16 15 19 19 C 1.37814 * 121.71990 * 330.28287 * 15 14 13 20 20 C 1.34921 * 118.72112 * 89.99715 * 12 11 10 21 21 O 1.21636 * 121.44415 * 11.09655 * 20 12 11 22 22 H 0.96999 * 120.00292 * 0.02562 * 1 2 3 23 23 H 1.08991 * 109.47509 * 59.99232 * 9 7 2 24 24 H 1.09004 * 109.46362 * 299.99692 * 9 7 2 25 25 H 1.08993 * 109.47409 * 59.99453 * 10 9 7 26 26 H 1.09004 * 109.46989 * 299.99001 * 10 9 7 27 27 H 1.08993 * 109.47509 * 59.99645 * 11 10 9 28 28 H 1.08995 * 109.46797 * 299.99202 * 11 10 9 29 29 H 1.09003 * 108.92604 * 259.56236 * 13 12 11 30 30 H 1.09001 * 108.92902 * 18.23511 * 13 12 11 31 31 H 1.09007 * 109.58557 * 287.16266 * 14 13 12 32 32 H 1.09005 * 109.60601 * 166.69579 * 14 13 12 33 33 H 1.08002 * 124.66843 * 180.14896 * 17 16 15 34 34 H 1.08003 * 123.30136 * 179.81833 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6364 0.0009 12 7 6.0400 -4.0177 0.0014 13 6 6.2731 -4.6778 1.2799 14 6 5.7999 -6.1311 1.2754 15 6 6.3016 -6.8013 0.0138 16 16 6.6789 -8.4431 -0.2047 17 6 7.1082 -8.2017 -1.8896 18 6 6.9687 -6.9259 -2.2304 19 6 6.5034 -6.0937 -1.1514 20 6 6.2560 -4.6294 -1.1816 21 8 6.2482 -4.0087 -2.2276 22 1 -0.4850 0.8400 -0.0004 23 1 3.8746 -0.6799 0.8910 24 1 3.8751 -0.6804 -0.8889 25 1 3.6585 -3.1502 -0.8891 26 1 3.6580 -3.1505 0.8909 27 1 5.9150 -2.1226 0.8908 28 1 5.9148 -2.1226 -0.8891 29 1 7.3403 -4.6544 1.5005 30 1 5.7390 -4.1358 2.0604 31 1 4.7104 -6.1608 1.2966 32 1 6.1991 -6.6485 2.1478 33 1 7.4440 -8.9826 -2.5559 34 1 7.1808 -6.5500 -3.2204 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309430762.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:28 Heat of formation + Delta-G solvation = -13.786696 kcal Electronic energy + Delta-G solvation = -17384.786537 eV Core-core repulsion = 14601.716277 eV Total energy + Delta-G solvation = -2783.070261 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.26787 -37.05316 -36.31835 -34.15828 -32.48562 -31.03264 -28.83891 -27.35827 -24.78393 -23.57302 -22.65984 -20.79668 -20.04968 -18.14300 -17.42673 -17.07038 -16.68100 -15.74774 -15.15995 -14.74292 -14.10677 -14.03320 -13.95097 -13.68779 -13.45862 -12.91427 -12.67444 -12.21512 -12.14546 -11.95300 -11.74556 -11.40779 -11.28276 -11.11547 -10.73520 -10.13348 -9.87975 -9.71592 -9.60194 -9.19923 -8.98714 -8.66473 -8.51425 -8.33847 -6.01939 -3.99974 0.57067 1.28824 1.73181 1.92033 3.06347 3.33730 3.38214 3.40469 3.43491 4.27231 4.47567 4.54286 4.68523 4.91637 4.94230 5.10805 5.31951 5.38417 5.45577 5.53557 5.65357 5.66942 5.86234 5.91157 6.05932 6.11384 6.30782 6.48161 6.81228 6.88962 7.30870 7.39879 7.52917 7.81053 8.29177 8.56558 9.02742 9.60400 11.11625 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.036582 B = 0.004047 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.227809 B = 6916.822752 C = 7039.675040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.070 0.930 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.105 3.895 12 N -0.610 5.610 13 C 0.122 3.878 14 C -0.067 4.067 15 C -0.186 4.186 16 S 0.190 5.810 17 C -0.244 4.244 18 C -0.077 4.077 19 C -0.164 4.164 20 C 0.584 3.416 21 O -0.526 6.526 22 H 0.263 0.737 23 H 0.016 0.984 24 H 0.014 0.986 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.169 0.831 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.045 -17.315 3.358 24.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.088 0.912 9 C -0.049 4.049 10 C -0.153 4.153 11 C -0.016 4.016 12 N -0.342 5.342 13 C -0.003 4.003 14 C -0.107 4.107 15 C -0.306 4.306 16 S 0.457 5.543 17 C -0.379 4.379 18 C -0.106 4.106 19 C -0.181 4.181 20 C 0.371 3.629 21 O -0.403 6.403 22 H 0.072 0.928 23 H 0.035 0.965 24 H 0.032 0.968 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.187 0.813 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 16.886 -18.152 3.738 25.072 hybrid contribution 0.235 2.069 -0.967 2.296 sum 17.121 -16.083 2.771 23.653 Atomic orbital electron populations 1.69918 1.06319 1.26861 1.51285 1.25033 0.94739 0.99193 0.94565 0.86761 0.80283 0.83544 0.78593 1.20236 1.21432 1.18992 1.21114 0.89434 0.94441 1.50697 0.91158 1.19517 0.97272 0.91786 0.96351 1.21816 0.91742 1.00303 1.01430 1.21899 0.96345 0.80288 1.03105 1.47604 1.66384 1.15229 1.05019 1.21220 1.01016 0.91972 0.86057 1.20685 1.02397 0.94730 0.92844 1.25349 1.05427 0.99772 1.00030 1.82679 1.61572 1.03520 1.06516 1.25416 1.12307 1.00663 0.99502 1.20866 0.98622 0.91651 0.99485 1.21080 1.08819 0.95086 0.93153 1.17750 0.76177 0.85577 0.83356 1.90798 1.51087 1.67576 1.30829 0.92763 0.96539 0.96805 0.92552 0.92724 0.90750 0.89752 0.91756 0.88666 0.88518 0.88452 0.81337 0.83111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.39 13.96 55.43 0.77 -27.61 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -15.14 9.66 -34.44 -0.33 -15.47 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.01 -0.27 4.04 -27.88 -0.11 -0.39 16 10 C -0.11 -2.33 5.47 -26.73 -0.15 -2.48 16 11 C 0.11 1.77 5.32 -4.04 -0.02 1.75 16 12 N -0.61 -9.20 2.79 -175.14 -0.49 -9.68 16 13 C 0.12 1.29 6.32 -4.52 -0.03 1.26 16 14 C -0.07 -0.62 6.48 -27.62 -0.18 -0.80 16 15 C -0.19 -2.07 6.25 -34.12 -0.21 -2.28 16 16 S 0.19 1.62 22.99 -107.50 -2.47 -0.85 16 17 C -0.24 -2.26 11.12 28.86 0.32 -1.94 16 18 C -0.08 -0.93 10.39 -39.20 -0.41 -1.34 16 19 C -0.16 -2.29 6.07 -103.55 -0.63 -2.92 16 20 C 0.58 10.00 7.65 -11.95 -0.09 9.91 16 21 O -0.53 -10.92 16.66 5.25 0.09 -10.83 16 22 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 23 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 24 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 25 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.07 1.08 8.01 -51.93 -0.42 0.66 16 28 H 0.08 1.55 7.27 -51.93 -0.38 1.18 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.10 0.89 7.89 -51.93 -0.41 0.48 16 31 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.15 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 299.93 15.07 4.52 4.52 Total: -1.00 -34.56 299.93 -8.70 -43.27 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -4.52 Total: -3.37 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -1.94 Total: -12.83 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.29 Total: -37.30 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.47 Total: -0.85 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.56 -8.70 -43.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309430762.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.479 kcal (2) G-P(sol) polarization free energy of solvation -34.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds