Wall clock time and date at job start Mon Mar 30 2020 06:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99888 * 2 1 4 4 H 1.48501 * 109.46795 * 269.99591 * 3 2 1 5 5 H 1.48499 * 109.47196 * 29.99510 * 3 2 1 6 6 H 1.48496 * 109.47386 * 149.99729 * 3 2 1 7 7 C 1.37869 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00523 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00098 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47142 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46740 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.46885 * 179.97438 * 11 10 9 13 13 C 1.45765 * 118.72510 * 270.02235 * 12 11 10 14 14 C 1.52843 * 112.24221 * 138.86644 * 13 12 11 15 15 C 1.51404 * 108.71059 * 46.92048 * 14 13 12 16 16 S 1.69868 * 127.49073 * 150.69593 * 15 14 13 17 17 C 1.75534 * 92.57620 * 179.24666 * 16 15 14 18 18 C 1.32788 * 110.65530 * 0.42082 * 17 16 15 19 19 C 1.37814 * 121.71990 * 330.28287 * 15 14 13 20 20 C 1.34921 * 118.72112 * 89.99715 * 12 11 10 21 21 O 1.21636 * 121.44415 * 11.09655 * 20 12 11 22 22 H 0.96999 * 120.00292 * 0.02562 * 1 2 3 23 23 H 1.08991 * 109.47509 * 59.99232 * 9 7 2 24 24 H 1.09004 * 109.46362 * 299.99692 * 9 7 2 25 25 H 1.08993 * 109.47409 * 59.99453 * 10 9 7 26 26 H 1.09004 * 109.46989 * 299.99001 * 10 9 7 27 27 H 1.08993 * 109.47509 * 59.99645 * 11 10 9 28 28 H 1.08995 * 109.46797 * 299.99202 * 11 10 9 29 29 H 1.09003 * 108.92604 * 259.56236 * 13 12 11 30 30 H 1.09001 * 108.92902 * 18.23511 * 13 12 11 31 31 H 1.09007 * 109.58557 * 287.16266 * 14 13 12 32 32 H 1.09005 * 109.60601 * 166.69579 * 14 13 12 33 33 H 1.08002 * 124.66843 * 180.14896 * 17 16 15 34 34 H 1.08003 * 123.30136 * 179.81833 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6364 0.0009 12 7 6.0400 -4.0177 0.0014 13 6 6.2731 -4.6778 1.2799 14 6 5.7999 -6.1311 1.2754 15 6 6.3016 -6.8013 0.0138 16 16 6.6789 -8.4431 -0.2047 17 6 7.1082 -8.2017 -1.8896 18 6 6.9687 -6.9259 -2.2304 19 6 6.5034 -6.0937 -1.1514 20 6 6.2560 -4.6294 -1.1816 21 8 6.2482 -4.0087 -2.2276 22 1 -0.4850 0.8400 -0.0004 23 1 3.8746 -0.6799 0.8910 24 1 3.8751 -0.6804 -0.8889 25 1 3.6585 -3.1502 -0.8891 26 1 3.6580 -3.1505 0.8909 27 1 5.9150 -2.1226 0.8908 28 1 5.9148 -2.1226 -0.8891 29 1 7.3403 -4.6544 1.5005 30 1 5.7390 -4.1358 2.0604 31 1 4.7104 -6.1608 1.2966 32 1 6.1991 -6.6485 2.1478 33 1 7.4440 -8.9826 -2.5559 34 1 7.1808 -6.5500 -3.2204 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309430762.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:28 Heat of formation + Delta-G solvation = -36.244135 kcal Electronic energy + Delta-G solvation = -17385.760365 eV Core-core repulsion = 14601.716277 eV Total energy + Delta-G solvation = -2784.044088 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.38978 -38.07539 -37.55687 -35.83745 -34.18164 -32.54656 -29.77234 -29.03998 -25.98313 -24.82719 -23.81659 -22.23230 -21.51150 -19.12264 -18.97095 -18.23384 -18.14103 -16.87194 -16.37426 -16.15872 -15.85853 -15.41651 -14.96681 -14.78517 -14.60860 -14.39824 -13.90280 -13.81348 -13.37079 -13.06213 -12.95044 -12.79593 -12.56508 -12.27667 -12.10953 -11.91879 -11.79594 -11.53529 -11.39426 -10.90031 -10.78130 -9.90182 -9.63513 -9.29692 -8.30843 -6.35790 -0.29738 0.54216 0.92096 0.97959 1.36454 1.38182 1.50193 1.95713 2.23711 2.35886 3.04570 3.46658 3.64115 3.90040 4.08916 4.12053 4.17586 4.32021 4.35375 4.51870 4.60655 4.71336 4.75629 4.85923 4.87702 4.97106 5.01785 5.11933 5.26740 5.37334 5.51468 5.54019 5.64398 6.25884 6.36063 6.71420 7.06861 7.28818 8.86233 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.036582 B = 0.004047 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.227809 B = 6916.822752 C = 7039.675040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.954 3.046 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.238 1.238 7 C -0.535 4.535 8 H 0.026 0.974 9 C -0.008 4.008 10 C -0.101 4.101 11 C 0.115 3.885 12 N -0.609 5.609 13 C 0.111 3.889 14 C -0.067 4.067 15 C -0.188 4.188 16 S 0.271 5.729 17 C -0.237 4.237 18 C -0.107 4.107 19 C -0.207 4.207 20 C 0.571 3.429 21 O -0.583 6.583 22 H 0.267 0.733 23 H 0.037 0.963 24 H 0.011 0.989 25 H 0.021 0.979 26 H 0.063 0.937 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.139 0.861 33 H 0.199 0.801 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.331 -18.439 5.556 27.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.776 3.224 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.161 1.161 7 C -0.573 4.573 8 H 0.044 0.956 9 C -0.046 4.046 10 C -0.140 4.140 11 C -0.008 4.008 12 N -0.340 5.340 13 C -0.012 4.012 14 C -0.106 4.106 15 C -0.309 4.309 16 S 0.539 5.461 17 C -0.372 4.372 18 C -0.136 4.136 19 C -0.225 4.225 20 C 0.360 3.640 21 O -0.465 6.465 22 H 0.076 0.924 23 H 0.055 0.945 24 H 0.030 0.970 25 H 0.040 0.960 26 H 0.081 0.919 27 H 0.128 0.872 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.131 0.869 31 H 0.109 0.891 32 H 0.157 0.843 33 H 0.216 0.784 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 19.192 -19.319 5.981 27.881 hybrid contribution -0.548 2.217 -1.612 2.795 sum 18.644 -17.102 4.369 25.674 Atomic orbital electron populations 1.70076 1.08412 1.28261 1.52601 1.26068 0.95676 1.03723 0.93916 0.85607 0.79833 0.77840 0.79069 1.19842 1.20614 1.16063 1.21465 0.92181 0.92990 1.50670 0.95574 1.19457 0.93892 0.94343 0.96905 1.21617 0.94558 0.97706 1.00131 1.21641 0.93421 0.81961 1.03773 1.47712 1.65328 1.14657 1.06292 1.21610 1.02805 0.92801 0.83995 1.20841 1.02201 0.94101 0.93505 1.25750 1.03837 1.01647 0.99694 1.82427 1.58830 1.00184 1.04656 1.25822 1.10315 1.00124 1.00971 1.20881 1.00737 0.92822 0.99154 1.20976 1.12590 0.93603 0.95309 1.18399 0.75328 0.87133 0.83116 1.90741 1.53940 1.69037 1.32795 0.92434 0.94487 0.97041 0.96006 0.91876 0.87248 0.91834 0.89579 0.86943 0.89054 0.84311 0.78413 0.84221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.36 13.96 21.44 0.30 -61.06 16 2 C 0.00 0.16 5.47 84.65 0.46 0.62 16 3 Si 0.95 45.13 27.47 68.60 1.88 47.01 16 4 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 7 C -0.54 -32.11 9.66 25.60 0.25 -31.87 16 8 H 0.03 1.73 7.99 -2.91 -0.02 1.71 16 9 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 10 C -0.10 -4.20 5.47 30.60 0.17 -4.03 16 11 C 0.11 3.80 5.32 86.38 0.46 4.26 16 12 N -0.61 -18.10 2.79 -826.17 -2.30 -20.40 16 13 C 0.11 2.05 6.32 86.47 0.55 2.59 16 14 C -0.07 -1.04 6.48 30.02 0.19 -0.85 16 15 C -0.19 -3.78 6.25 25.81 0.16 -3.62 16 16 S 0.27 3.64 22.99 -56.49 -1.30 2.34 16 17 C -0.24 -3.87 11.12 66.64 0.74 -3.12 16 18 C -0.11 -2.61 10.39 22.55 0.23 -2.37 16 19 C -0.21 -5.80 6.07 -19.17 -0.12 -5.92 16 20 C 0.57 20.30 7.65 86.97 0.67 20.97 16 21 O -0.58 -26.00 16.66 -4.15 -0.07 -26.07 16 22 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 23 H 0.04 1.64 7.20 -2.39 -0.02 1.63 16 24 H 0.01 0.55 7.57 -2.38 -0.02 0.53 16 25 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 27 H 0.11 2.86 8.01 -2.39 -0.02 2.84 16 28 H 0.06 2.39 7.27 -2.39 -0.02 2.37 16 29 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.11 1.70 7.89 -2.39 -0.02 1.69 16 31 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.14 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.20 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -80.31 299.93 3.43 -76.88 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: 1.04 Total: 4.89 kcal Atomic # 6 Polarization: -27.48 SS G_CDS: 3.88 Total: -23.59 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -2.00 Total: -81.46 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.07 Total: -26.07 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.01 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -1.30 Total: 2.34 kcal Total: -80.31 3.43 -76.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309430762.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.636 kcal (2) G-P(sol) polarization free energy of solvation -80.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds