Wall clock time and date at job start Mon Mar 30 2020 06:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86802 * 120.00058 * 2 1 4 4 H 1.48499 * 109.47487 * 270.00445 * 3 2 1 5 5 H 1.48503 * 109.47035 * 30.00049 * 3 2 1 6 6 H 1.48494 * 109.47160 * 150.00290 * 3 2 1 7 7 C 1.39903 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00201 * 175.54063 * 7 2 1 9 9 C 1.41158 * 119.99973 * 355.53855 * 7 2 1 10 10 C 1.40872 * 120.15780 * 35.01649 * 9 7 2 11 11 C 1.36379 * 119.82534 * 180.24903 * 10 9 7 12 12 C 1.39485 * 120.16599 * 359.48138 * 11 10 9 13 13 N 1.39240 * 119.83191 * 180.29621 * 12 11 10 14 14 C 1.34777 * 119.99927 * 324.71145 * 13 12 11 15 15 O 1.21283 * 119.99872 * 4.29469 * 14 13 12 16 16 C 1.50701 * 119.99819 * 184.29010 * 14 13 12 17 17 C 1.52997 * 109.47073 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47209 * 179.97438 * 17 16 14 19 19 S 1.81399 * 109.47241 * 180.02562 * 18 17 16 20 20 C 1.39486 * 120.33261 * 0.28042 * 12 11 10 21 21 C 1.36370 * 120.16815 * 359.97247 * 20 12 11 22 22 H 0.97001 * 119.99528 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.09258 * 0.03815 * 10 9 7 24 24 H 1.07999 * 119.91708 * 179.75700 * 11 10 9 25 25 H 0.97001 * 119.99746 * 144.71553 * 13 12 11 26 26 H 1.09000 * 109.47190 * 300.00348 * 16 14 13 27 27 H 1.09000 * 109.46618 * 60.00494 * 16 14 13 28 28 H 1.09000 * 109.47469 * 300.00266 * 17 16 14 29 29 H 1.09007 * 109.46797 * 60.00360 * 17 16 14 30 30 H 1.09000 * 109.47182 * 300.00515 * 18 17 16 31 31 H 1.09007 * 109.46888 * 60.00488 * 18 17 16 32 32 H 1.34497 * 103.00028 * 180.02562 * 19 18 17 33 33 H 1.08000 * 119.91410 * 180.02562 * 20 12 11 34 34 H 1.08004 * 120.08541 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4902 2.0466 -1.4000 5 1 1.4402 2.6527 0.7001 6 1 3.5403 1.4402 0.6999 7 6 2.0083 -1.2116 -0.0005 8 1 3.0858 -1.2130 -0.0733 9 6 1.3057 -2.4323 0.0940 10 6 0.0438 -2.5716 -0.5164 11 6 -0.6313 -3.7524 -0.4165 12 6 -0.0706 -4.8238 0.2787 13 7 -0.7632 -6.0281 0.3711 14 6 -2.1072 -6.0265 0.4721 15 8 -2.7191 -4.9816 0.4041 16 6 -2.8495 -7.3231 0.6693 17 6 -4.3514 -7.0433 0.7524 18 6 -5.1051 -8.3597 0.9520 19 16 -6.8859 -8.0281 1.0499 20 6 1.1807 -4.6948 0.8814 21 6 1.8654 -3.5187 0.7944 22 1 -0.4849 0.8401 -0.0004 23 1 -0.3895 -1.7446 -1.0592 24 1 -1.6006 -3.8596 -0.8805 25 1 -0.2784 -6.8683 0.3629 26 1 -2.6493 -7.9878 -0.1710 27 1 -2.5166 -7.7953 1.5936 28 1 -4.5513 -6.3787 1.5930 29 1 -4.6846 -6.5708 -0.1716 30 1 -4.9052 -9.0239 0.1112 31 1 -4.7720 -8.8326 1.8759 32 1 -7.4127 -9.2534 1.2231 33 1 1.6088 -5.5289 1.4177 34 1 2.8344 -3.4205 1.2613 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309459388.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:32 Heat of formation + Delta-G solvation = -25.943882 kcal Electronic energy + Delta-G solvation = -16930.953805 eV Core-core repulsion = 14147.356369 eV Total energy + Delta-G solvation = -2783.597436 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.69280 -37.33885 -34.74820 -34.22761 -32.86648 -29.60745 -29.26925 -27.91980 -24.86499 -22.56928 -21.32668 -20.73139 -19.49469 -17.60428 -17.27044 -16.83498 -16.11482 -15.98768 -15.13472 -14.70210 -14.38644 -13.92233 -13.68320 -13.14240 -12.73409 -12.41673 -12.22004 -11.92425 -11.78535 -11.68048 -11.42418 -11.14892 -10.97048 -10.88795 -10.56377 -10.48051 -9.91584 -9.85799 -9.43185 -8.97884 -8.71379 -8.29532 -7.50676 -6.86851 -6.57155 -4.31176 1.35676 2.51149 2.59832 3.02247 3.11078 3.12334 3.16357 3.36365 3.73272 4.00811 4.63778 4.67446 4.74233 4.86711 5.17930 5.25249 5.33651 5.52685 5.69230 5.94682 6.14162 6.18948 6.40557 6.81993 7.01936 7.06524 7.22271 7.32029 7.65475 7.69538 8.00299 8.11473 8.21657 8.36051 8.69217 8.79369 8.95605 9.03677 10.33854 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.036837 B = 0.003408 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.922368 B = 8215.047566 C = 8855.131041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.464 4.464 8 H 0.075 0.925 9 C 0.100 3.900 10 C -0.144 4.144 11 C -0.093 4.093 12 C 0.004 3.996 13 N -0.655 5.655 14 C 0.496 3.504 15 O -0.525 6.525 16 C -0.133 4.133 17 C -0.090 4.090 18 C -0.066 4.066 19 S -0.245 6.245 20 C -0.114 4.114 21 C -0.205 4.205 22 H 0.278 0.722 23 H 0.130 0.870 24 H 0.108 0.892 25 H 0.394 0.606 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.438 -14.604 0.992 15.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.147 4.147 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.494 4.494 8 H 0.093 0.907 9 C 0.097 3.903 10 C -0.164 4.164 11 C -0.113 4.113 12 C -0.088 4.088 13 N -0.298 5.298 14 C 0.282 3.718 15 O -0.401 6.401 16 C -0.175 4.175 17 C -0.129 4.129 18 C -0.215 4.215 19 S -0.094 6.094 20 C -0.134 4.134 21 C -0.225 4.225 22 H 0.089 0.911 23 H 0.148 0.852 24 H 0.126 0.874 25 H 0.228 0.772 26 H 0.109 0.891 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.044 0.956 33 H 0.108 0.892 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.919 -13.326 0.985 15.048 hybrid contribution 1.149 -0.985 0.295 1.542 sum -5.770 -14.311 1.280 15.484 Atomic orbital electron populations 1.69789 1.07237 1.28766 1.37606 1.25892 0.94934 1.01153 0.92675 0.86208 0.80158 0.80614 0.79033 1.19539 1.20301 1.18796 1.19473 0.94632 0.90241 1.45096 0.90676 1.17728 0.92282 0.91849 0.88414 1.21313 0.96968 0.96129 1.02010 1.20653 0.98974 0.93321 0.98395 1.17301 0.95037 0.87154 1.09340 1.43020 1.06267 1.08269 1.72270 1.20521 0.82612 0.90975 0.77642 1.90733 1.67231 1.33294 1.48856 1.21603 0.95370 0.96534 1.03978 1.21070 0.91971 0.94544 1.05347 1.23184 0.91048 1.02334 1.04934 1.87782 1.08541 1.15508 1.97529 1.20072 0.95041 0.97510 1.00804 1.20688 1.01111 0.94688 1.05989 0.91062 0.85215 0.87431 0.77245 0.89075 0.89017 0.89717 0.89745 0.89797 0.89794 0.95567 0.89206 0.88572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.67 10.61 55.55 0.59 -21.08 16 2 C 0.07 1.77 5.42 -17.34 -0.09 1.68 16 3 Si 0.91 19.21 29.56 -169.99 -5.03 14.18 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 6 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.46 -12.42 9.02 -37.85 -0.34 -12.76 16 8 H 0.08 1.91 7.85 -52.49 -0.41 1.50 16 9 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 10 C -0.14 -3.88 8.61 -39.26 -0.34 -4.22 16 11 C -0.09 -2.32 8.61 -39.79 -0.34 -2.67 16 12 C 0.00 0.09 6.31 -83.57 -0.53 -0.44 16 13 N -0.66 -10.94 5.30 -9.73 -0.05 -11.00 16 14 C 0.50 8.16 7.66 -10.98 -0.08 8.08 16 15 O -0.53 -11.24 13.40 5.55 0.07 -11.16 16 16 C -0.13 -1.35 5.70 -27.88 -0.16 -1.51 16 17 C -0.09 -0.98 4.51 -26.73 -0.12 -1.10 16 18 C -0.07 -0.54 6.30 37.16 0.23 -0.31 16 19 S -0.25 -2.49 25.88 -107.50 -2.78 -5.27 16 20 C -0.11 -2.47 9.90 -39.79 -0.39 -2.86 16 21 C -0.20 -4.94 9.74 -39.26 -0.38 -5.33 16 22 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 23 H 0.13 3.66 6.15 -52.49 -0.32 3.34 16 24 H 0.11 2.69 6.22 -52.49 -0.33 2.36 16 25 H 0.39 4.90 8.82 -40.82 -0.36 4.54 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 29 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 30 H 0.08 0.56 8.14 -51.92 -0.42 0.13 16 31 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.08 0.69 9.07 97.61 0.89 1.58 16 33 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.10 2.16 8.06 -52.48 -0.42 1.73 16 LS Contribution 304.70 15.07 4.59 4.59 Total: -1.00 -30.93 304.70 -8.79 -39.72 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -3.05 Total: 9.37 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -3.14 Total: -19.35 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: 0.54 Total: -32.08 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.07 Total: -11.16 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Atomic # 16 Polarization: -2.49 SS G_CDS: -2.78 Total: -5.27 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.93 -8.79 -39.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309459388.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.777 kcal (2) G-P(sol) polarization free energy of solvation -30.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds