Wall clock time and date at job start Mon Mar 30 2020 06:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00427 * 2 1 4 4 H 1.48506 * 109.47141 * 270.00064 * 3 2 1 5 5 H 1.48503 * 109.47271 * 29.99638 * 3 2 1 6 6 H 1.48495 * 109.47378 * 150.00376 * 3 2 1 7 7 C 1.37884 * 119.99548 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99735 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99591 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.46523 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99708 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47013 * 180.02562 * 11 10 9 13 13 N 1.30116 * 124.94530 * 274.97018 * 12 11 10 14 14 C 1.35783 * 109.64690 * 180.02562 * 13 12 11 15 15 C 1.39752 * 133.55774 * 179.97438 * 14 13 12 16 16 C 1.37682 * 119.76378 * 180.02562 * 15 14 13 17 17 Cl 1.73603 * 119.75424 * 179.97438 * 16 15 14 18 18 C 1.38893 * 120.49884 * 0.02562 * 16 15 14 19 19 C 1.37825 * 120.44498 * 0.02562 * 18 16 15 20 20 C 1.38812 * 119.84356 * 359.97438 * 19 18 16 21 21 N 1.36019 * 124.95344 * 95.00048 * 12 11 10 22 22 H 0.96996 * 126.34872 * 359.97027 * 21 12 11 23 23 H 0.97004 * 119.99505 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47234 * 60.00259 * 9 7 2 25 25 H 1.08999 * 109.47385 * 299.99377 * 9 7 2 26 26 H 1.00901 * 111.00161 * 303.95303 * 10 9 7 27 27 H 1.08998 * 109.47673 * 59.99580 * 11 10 9 28 28 H 1.08998 * 109.46945 * 299.99488 * 11 10 9 29 29 H 1.07999 * 120.11689 * 359.97438 * 15 14 13 30 30 H 1.07997 * 119.78110 * 179.97438 * 18 16 15 31 31 H 1.07993 * 120.07338 * 179.69905 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.6999 7 6 2.0044 -1.1942 0.0005 8 1 1.4643 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0000 10 7 4.0009 -2.5793 0.0001 11 6 5.4694 -2.6185 0.0001 12 6 5.9336 -4.0523 -0.0004 13 7 6.0752 -4.7902 1.0619 14 6 6.5086 -6.0264 0.7046 15 6 6.8181 -7.1837 1.4243 16 6 7.2448 -8.3099 0.7571 17 17 7.6297 -9.7472 1.6514 18 6 7.3706 -8.3046 -0.6261 19 6 7.0704 -7.1710 -1.3503 20 6 6.6387 -6.0263 -0.6943 21 7 6.2661 -4.7634 -1.1112 22 1 6.2462 -4.4427 -2.0264 23 1 -0.4849 0.8401 0.0004 24 1 3.8751 -0.6798 0.8894 25 1 3.8745 -0.6811 -0.8905 26 1 3.6257 -3.0954 0.7817 27 1 5.8464 -2.1145 0.8900 28 1 5.8464 -2.1148 -0.8899 29 1 6.7236 -7.1943 2.5001 30 1 7.7067 -9.1943 -1.1377 31 1 7.1750 -7.1719 -2.4251 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309546827.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:36 Heat of formation + Delta-G solvation = 61.586228 kcal Electronic energy + Delta-G solvation = -16436.106633 eV Core-core repulsion = 13550.720738 eV Total energy + Delta-G solvation = -2885.385895 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.23500 -37.95362 -36.36229 -35.44300 -33.27171 -32.53296 -30.11300 -30.04891 -27.85186 -25.06540 -22.59201 -22.31769 -21.28340 -20.78975 -18.08078 -17.54005 -16.92608 -15.97564 -15.51926 -15.04171 -14.72819 -14.33264 -14.13838 -13.78581 -13.46793 -13.01824 -12.78501 -12.51661 -12.07321 -11.92161 -11.68524 -11.16525 -11.12706 -10.83652 -10.75845 -10.63444 -10.07814 -9.96224 -9.40832 -8.66916 -8.42180 -8.34623 -7.73796 -6.12637 -4.12077 0.70433 1.14569 1.94774 2.62078 2.81205 3.23174 3.31326 3.31886 3.57617 4.04585 4.34917 4.40849 4.78037 4.98950 5.04495 5.10552 5.14575 5.20831 5.30512 5.49634 5.68476 5.76875 6.01352 6.10390 6.25196 6.49654 6.57944 6.86870 7.20441 7.41904 7.68560 7.80290 8.08521 8.52841 8.95009 9.47493 11.00482 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.046129 B = 0.003239 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.842459 B = 8642.957900 C = 8817.461951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.520 4.520 8 H 0.080 0.920 9 C 0.165 3.835 10 N -0.675 5.675 11 C 0.125 3.875 12 C 0.319 3.681 13 N -0.491 5.491 14 C 0.063 3.937 15 C -0.055 4.055 16 C -0.045 4.045 17 Cl -0.071 7.071 18 C -0.101 4.101 19 C -0.094 4.094 20 C 0.047 3.953 21 N -0.587 5.587 22 H 0.427 0.573 23 H 0.265 0.735 24 H -0.009 1.009 25 H 0.025 0.975 26 H 0.347 0.653 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.777 -14.332 -2.187 22.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.098 0.902 9 C 0.038 3.962 10 N -0.308 5.308 11 C -0.006 4.006 12 C 0.051 3.949 13 N -0.212 5.212 14 C -0.057 4.057 15 C -0.075 4.075 16 C -0.074 4.074 17 Cl -0.043 7.043 18 C -0.121 4.121 19 C -0.115 4.115 20 C -0.064 4.064 21 N -0.198 5.198 22 H 0.266 0.734 23 H 0.075 0.925 24 H 0.009 0.991 25 H 0.043 0.957 26 H 0.165 0.835 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 17.438 -14.157 -1.905 22.542 hybrid contribution 0.648 0.961 -0.363 1.215 sum 18.086 -13.196 -2.268 22.503 Atomic orbital electron populations 1.69894 1.06202 1.27025 1.50455 1.24902 0.94772 0.98979 0.94592 0.86815 0.80303 0.83769 0.78571 1.20132 1.21102 1.19131 1.20990 0.88636 0.94962 1.51224 0.90218 1.20051 0.96989 0.83961 0.95209 1.60620 1.01949 1.17754 1.50487 1.20519 0.92498 0.84866 1.02741 1.23836 0.94445 0.96047 0.80536 1.70498 1.21218 1.01802 1.27706 1.18853 1.03284 0.93377 0.90160 1.20005 0.98392 0.88842 1.00290 1.20379 1.06269 0.88624 0.92094 1.98360 1.92936 1.37479 1.75475 1.20660 1.01555 0.98350 0.91576 1.19839 1.02063 0.89933 0.99663 1.18950 1.04495 0.87451 0.95540 1.43126 1.55969 1.09895 1.10773 0.73391 0.92507 0.99115 0.95713 0.83452 0.91773 0.89336 0.84270 0.84362 0.85017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.96 55.43 0.77 -26.36 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 20.80 27.47 -169.99 -4.67 16.13 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 7 C -0.52 -14.47 9.87 -34.44 -0.34 -14.81 16 8 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 9 C 0.17 3.78 4.51 -4.97 -0.02 3.75 16 10 N -0.68 -13.20 6.48 -116.33 -0.75 -13.95 16 11 C 0.13 1.90 6.31 -4.97 -0.03 1.87 16 12 C 0.32 4.75 7.59 -154.83 -1.18 3.58 16 13 N -0.49 -8.11 11.27 -8.24 -0.09 -8.20 16 14 C 0.06 0.93 7.23 -84.70 -0.61 0.31 16 15 C -0.06 -0.70 9.86 -39.22 -0.39 -1.09 16 16 C -0.04 -0.49 6.31 -39.54 -0.25 -0.74 16 17 Cl -0.07 -0.70 28.94 -51.86 -1.50 -2.20 16 18 C -0.10 -0.97 9.80 -39.49 -0.39 -1.36 16 19 C -0.09 -0.94 10.06 -39.52 -0.40 -1.33 16 20 C 0.05 0.60 7.30 -83.97 -0.61 -0.01 16 21 N -0.59 -7.20 6.23 -8.00 -0.05 -7.25 16 22 H 0.43 3.92 8.96 -40.82 -0.37 3.56 16 23 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 24 H -0.01 -0.20 7.20 -51.93 -0.37 -0.58 16 25 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 26 H 0.35 7.04 8.71 -39.29 -0.34 6.70 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 31 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 288.69 15.07 4.35 4.35 Total: -1.00 -31.42 288.69 -9.43 -40.85 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -3.18 Total: 4.58 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -4.31 Total: -7.95 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.12 Total: -55.77 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.42 -9.43 -40.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309546827.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.439 kcal (2) G-P(sol) polarization free energy of solvation -31.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds