Wall clock time and date at job start Mon Mar 30 2020 06:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00427 * 2 1 4 4 H 1.48506 * 109.47141 * 270.00064 * 3 2 1 5 5 H 1.48503 * 109.47271 * 29.99638 * 3 2 1 6 6 H 1.48495 * 109.47378 * 150.00376 * 3 2 1 7 7 C 1.37884 * 119.99548 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99735 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99591 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.46523 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99708 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47013 * 180.02562 * 11 10 9 13 13 N 1.30116 * 124.94530 * 274.97018 * 12 11 10 14 14 C 1.35783 * 109.64690 * 180.02562 * 13 12 11 15 15 C 1.39752 * 133.55774 * 179.97438 * 14 13 12 16 16 C 1.37682 * 119.76378 * 180.02562 * 15 14 13 17 17 Cl 1.73603 * 119.75424 * 179.97438 * 16 15 14 18 18 C 1.38893 * 120.49884 * 0.02562 * 16 15 14 19 19 C 1.37825 * 120.44498 * 0.02562 * 18 16 15 20 20 C 1.38812 * 119.84356 * 359.97438 * 19 18 16 21 21 N 1.36019 * 124.95344 * 95.00048 * 12 11 10 22 22 H 0.96996 * 126.34872 * 359.97027 * 21 12 11 23 23 H 0.97004 * 119.99505 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47234 * 60.00259 * 9 7 2 25 25 H 1.08999 * 109.47385 * 299.99377 * 9 7 2 26 26 H 1.00901 * 111.00161 * 303.95303 * 10 9 7 27 27 H 1.08998 * 109.47673 * 59.99580 * 11 10 9 28 28 H 1.08998 * 109.46945 * 299.99488 * 11 10 9 29 29 H 1.07999 * 120.11689 * 359.97438 * 15 14 13 30 30 H 1.07997 * 119.78110 * 179.97438 * 18 16 15 31 31 H 1.07993 * 120.07338 * 179.69905 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.6999 7 6 2.0044 -1.1942 0.0005 8 1 1.4643 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0000 10 7 4.0009 -2.5793 0.0001 11 6 5.4694 -2.6185 0.0001 12 6 5.9336 -4.0523 -0.0004 13 7 6.0752 -4.7902 1.0619 14 6 6.5086 -6.0264 0.7046 15 6 6.8181 -7.1837 1.4243 16 6 7.2448 -8.3099 0.7571 17 17 7.6297 -9.7472 1.6514 18 6 7.3706 -8.3046 -0.6261 19 6 7.0704 -7.1710 -1.3503 20 6 6.6387 -6.0263 -0.6943 21 7 6.2661 -4.7634 -1.1112 22 1 6.2462 -4.4427 -2.0264 23 1 -0.4849 0.8401 0.0004 24 1 3.8751 -0.6798 0.8894 25 1 3.8745 -0.6811 -0.8905 26 1 3.6257 -3.0954 0.7817 27 1 5.8464 -2.1145 0.8900 28 1 5.8464 -2.1148 -0.8899 29 1 6.7236 -7.1943 2.5001 30 1 7.7067 -9.1943 -1.1377 31 1 7.1750 -7.1719 -2.4251 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309546827.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:36 Heat of formation + Delta-G solvation = 39.243274 kcal Electronic energy + Delta-G solvation = -16437.075496 eV Core-core repulsion = 13550.720738 eV Total energy + Delta-G solvation = -2886.354758 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.22389 -38.85903 -37.41080 -36.78386 -34.57007 -34.26174 -31.42322 -30.98169 -29.32008 -26.54359 -23.54099 -23.31012 -23.09100 -21.87734 -19.22794 -18.77031 -18.47940 -17.13560 -16.66078 -16.43434 -15.97357 -15.64885 -15.33362 -15.05484 -14.81089 -14.46694 -13.90189 -13.69639 -13.43913 -13.17206 -12.91900 -12.58631 -12.48687 -11.98325 -11.93694 -11.83647 -11.81757 -11.53322 -11.10689 -10.80157 -9.44825 -9.27908 -9.21219 -8.29248 -6.35183 -0.21371 0.24531 1.09987 1.38478 1.41026 1.51515 1.59286 1.86618 2.35940 2.63686 3.02128 3.05339 3.47384 3.63017 3.97760 4.08037 4.14119 4.27308 4.38563 4.48570 4.54749 4.75951 4.88298 5.05759 5.16628 5.19962 5.36320 5.48777 5.60104 5.83782 6.31439 6.39812 6.52996 6.72783 6.77806 7.29421 8.87730 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.046129 B = 0.003239 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.842459 B = 8642.957900 C = 8817.461951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.956 3.044 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.244 1.244 7 C -0.532 4.532 8 H 0.032 0.968 9 C 0.176 3.824 10 N -0.683 5.683 11 C 0.131 3.869 12 C 0.305 3.695 13 N -0.525 5.525 14 C 0.026 3.974 15 C -0.073 4.073 16 C -0.043 4.043 17 Cl -0.061 7.061 18 C -0.093 4.093 19 C -0.086 4.086 20 C 0.041 3.959 21 N -0.574 5.574 22 H 0.440 0.560 23 H 0.268 0.732 24 H -0.004 1.004 25 H 0.041 0.959 26 H 0.338 0.662 27 H 0.068 0.932 28 H 0.116 0.884 29 H 0.136 0.864 30 H 0.171 0.829 31 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.332 -14.472 -3.621 25.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.192 4.192 3 Si 0.778 3.222 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.167 1.167 7 C -0.570 4.570 8 H 0.050 0.950 9 C 0.047 3.953 10 N -0.315 5.315 11 C 0.000 4.000 12 C 0.037 3.963 13 N -0.247 5.247 14 C -0.092 4.092 15 C -0.094 4.094 16 C -0.072 4.072 17 Cl -0.032 7.032 18 C -0.113 4.113 19 C -0.107 4.107 20 C -0.071 4.071 21 N -0.186 5.186 22 H 0.283 0.717 23 H 0.077 0.923 24 H 0.014 0.986 25 H 0.059 0.941 26 H 0.155 0.845 27 H 0.086 0.914 28 H 0.134 0.866 29 H 0.154 0.846 30 H 0.188 0.812 31 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 20.024 -14.322 -3.363 24.847 hybrid contribution -0.144 0.774 0.100 0.794 sum 19.880 -13.548 -3.263 24.278 Atomic orbital electron populations 1.70068 1.08448 1.28338 1.52167 1.25948 0.95661 1.03601 0.93973 0.85593 0.79416 0.77738 0.79426 1.18649 1.21164 1.16696 1.21309 0.91529 0.93321 1.50868 0.94979 1.19813 0.93575 0.86002 0.95869 1.60486 1.05020 1.15750 1.50219 1.20536 0.89443 0.85760 1.04254 1.23589 0.95562 0.95936 0.81196 1.70385 1.22111 1.03058 1.29167 1.19171 1.04905 0.93416 0.91754 1.20097 0.99600 0.89284 1.00405 1.20550 1.05373 0.88370 0.92953 1.98366 1.92758 1.36616 1.75490 1.21086 0.99984 0.99339 0.90884 1.20270 1.00403 0.88624 1.01413 1.19261 1.04655 0.88206 0.94965 1.42999 1.55175 1.09538 1.10912 0.71724 0.92337 0.98621 0.94145 0.84499 0.91405 0.86568 0.84630 0.81165 0.81465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.06 13.96 21.45 0.30 -58.77 16 2 C 0.01 0.32 5.47 84.66 0.46 0.78 16 3 Si 0.96 42.32 27.47 68.60 1.88 44.20 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.24 -9.81 6.54 99.48 0.65 -9.16 16 7 C -0.53 -30.28 9.87 25.60 0.25 -30.03 16 8 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 9 C 0.18 7.85 4.51 85.56 0.39 8.24 16 10 N -0.68 -26.53 6.48 -521.97 -3.38 -29.91 16 11 C 0.13 3.80 6.31 85.56 0.54 4.34 16 12 C 0.31 8.89 7.59 137.93 1.05 9.94 16 13 N -0.53 -17.53 11.27 -179.98 -2.03 -19.55 16 14 C 0.03 0.77 7.23 39.45 0.29 1.06 16 15 C -0.07 -1.87 9.86 22.50 0.22 -1.65 16 16 C -0.04 -0.89 6.31 22.30 0.14 -0.75 16 17 Cl -0.06 -1.11 28.94 -2.72 -0.08 -1.19 16 18 C -0.09 -1.49 9.80 22.33 0.22 -1.27 16 19 C -0.09 -1.44 10.06 22.31 0.22 -1.22 16 20 C 0.04 0.97 7.30 38.84 0.28 1.25 16 21 N -0.57 -13.17 6.23 -179.21 -1.12 -14.29 16 22 H 0.44 7.08 8.96 -92.71 -0.83 6.25 16 23 H 0.27 15.46 8.31 -92.71 -0.77 14.68 16 24 H 0.00 -0.17 7.20 -2.39 -0.02 -0.19 16 25 H 0.04 1.70 7.57 -2.39 -0.02 1.68 16 26 H 0.34 14.09 8.71 -89.69 -0.78 13.31 16 27 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 30 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 31 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -70.38 288.69 -0.85 -71.23 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -0.49 Total: 17.58 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 4.06 Total: -9.30 kcal Atomic # 7 Polarization: -116.29 SS G_CDS: -6.23 Total: -122.52 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.88 Total: 44.20 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -70.38 -0.85 -71.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309546827.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.475 kcal (2) G-P(sol) polarization free energy of solvation -70.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds