Wall clock time and date at job start Mon Mar 30 2020 06:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86802 * 120.00137 * 2 1 4 4 H 1.48498 * 109.47011 * 270.00298 * 3 2 1 5 5 H 1.48502 * 109.47110 * 30.00202 * 3 2 1 6 6 H 1.48500 * 109.47151 * 149.99752 * 3 2 1 7 7 C 1.39926 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00560 * 196.78686 * 7 2 1 9 9 C 1.41408 * 119.99990 * 16.79283 * 7 2 1 10 10 C 1.40783 * 120.20969 * 25.16254 * 9 7 2 11 11 C 1.37638 * 119.88611 * 180.02562 * 10 9 7 12 12 C 1.38539 * 120.32220 * 0.02562 * 11 10 9 13 13 C 1.39247 * 120.42645 * 359.95816 * 12 11 10 14 14 N 1.39941 * 119.94307 * 180.02562 * 13 12 11 15 15 C 1.34768 * 120.00177 * 145.79552 * 14 13 12 16 16 O 1.21293 * 120.00007 * 354.88106 * 15 14 13 17 17 C 1.50696 * 120.00402 * 174.88846 * 15 14 13 18 18 C 1.52996 * 109.47520 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47429 * 180.02562 * 18 17 15 20 20 S 1.81403 * 109.47251 * 179.97438 * 19 18 17 21 21 C 1.38279 * 120.10718 * 0.27514 * 13 12 11 22 22 H 0.97005 * 120.00128 * 359.97438 * 1 2 3 23 23 H 1.07998 * 120.05126 * 0.02563 * 10 9 7 24 24 H 1.08001 * 119.84035 * 180.02562 * 11 10 9 25 25 H 1.08003 * 119.78466 * 179.97438 * 12 11 10 26 26 H 0.97004 * 120.00119 * 325.78463 * 14 13 12 27 27 H 1.09001 * 109.47138 * 59.99392 * 17 15 14 28 28 H 1.09002 * 109.46814 * 299.99847 * 17 15 14 29 29 H 1.09002 * 109.47055 * 299.99825 * 18 17 15 30 30 H 1.09001 * 109.47309 * 59.99622 * 18 17 15 31 31 H 1.08998 * 109.47107 * 299.99514 * 19 18 17 32 32 H 1.09001 * 109.47247 * 59.99506 * 19 18 17 33 33 H 1.34500 * 103.00033 * 179.97438 * 20 19 18 34 34 H 1.07993 * 120.16155 * 179.72710 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2118 0.0005 8 1 3.0534 -1.2317 0.2707 9 6 1.3461 -2.4105 -0.3527 10 6 0.2107 -2.3742 -1.1843 11 6 -0.4286 -3.5449 -1.5235 12 6 0.0393 -4.7599 -1.0502 13 6 1.1614 -4.8112 -0.2272 14 7 1.6257 -6.0441 0.2448 15 6 2.9472 -6.2462 0.4147 16 8 3.7400 -5.3947 0.0717 17 6 3.4401 -7.5302 1.0306 18 6 4.9679 -7.5053 1.1080 19 6 5.4684 -8.8092 1.7328 20 16 7.2799 -8.7798 1.8239 21 6 1.8144 -3.6454 0.1287 22 1 -0.4850 0.8401 0.0004 23 1 -0.1580 -1.4293 -1.5553 24 1 -1.2994 -3.5163 -2.1619 25 1 -0.4693 -5.6732 -1.3215 26 1 0.9963 -6.7532 0.4498 27 1 3.1215 -8.3731 0.4174 28 1 3.0268 -7.6340 2.0338 29 1 5.3809 -7.4017 0.1046 30 1 5.2870 -6.6623 1.7210 31 1 5.0554 -8.9132 2.7361 32 1 5.1493 -9.6518 1.1194 33 1 7.5739 -9.9668 2.3839 34 1 2.6821 -3.6838 0.7705 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313450965.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:01 Heat of formation + Delta-G solvation = -48.449410 kcal Electronic energy + Delta-G solvation = -17017.679617 eV Core-core repulsion = 14233.106269 eV Total energy + Delta-G solvation = -2784.573349 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.19000 -39.02118 -36.24369 -35.42062 -34.78894 -31.73910 -30.56102 -28.49868 -27.23381 -24.02598 -22.83520 -22.35219 -20.98741 -19.49316 -18.50944 -17.79414 -17.35314 -16.98904 -16.76593 -16.43048 -15.61723 -15.57243 -15.00172 -14.77855 -14.59902 -14.02198 -13.54416 -13.34882 -12.96362 -12.95335 -12.87220 -12.76160 -12.61598 -12.17469 -11.94543 -11.80243 -11.49768 -11.28192 -11.13840 -10.84618 -10.58240 -9.38544 -9.07676 -8.73266 -8.59087 -6.36710 0.65969 0.89987 1.01694 1.36547 1.49285 1.50049 1.84120 1.88271 2.21320 2.34990 2.74549 3.67711 3.77264 3.96641 3.97746 4.41475 4.47747 4.49451 4.60781 4.65319 4.71955 5.07381 5.09591 5.11749 5.14913 5.28750 5.31859 5.35625 5.78921 5.88782 6.09350 6.12953 6.36698 6.69512 6.72596 6.94912 7.02677 7.43012 8.33689 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.022887 B = 0.004003 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.101912 B = 6993.261384 C = 8083.989099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.039 3.961 3 Si 0.981 3.019 4 H -0.260 1.260 5 H -0.261 1.261 6 H -0.265 1.265 7 C -0.505 4.505 8 H 0.062 0.938 9 C 0.089 3.911 10 C -0.200 4.200 11 C -0.092 4.092 12 C -0.251 4.251 13 C 0.158 3.842 14 N -0.660 5.660 15 C 0.495 3.505 16 O -0.573 6.573 17 C -0.115 4.115 18 C -0.090 4.090 19 C -0.048 4.048 20 S -0.300 6.300 21 C -0.239 4.239 22 H 0.289 0.711 23 H 0.103 0.897 24 H 0.122 0.878 25 H 0.134 0.866 26 H 0.423 0.577 27 H 0.135 0.865 28 H 0.129 0.871 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.827 -16.694 3.455 17.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.176 4.176 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.185 1.185 6 H -0.189 1.189 7 C -0.534 4.534 8 H 0.080 0.920 9 C 0.086 3.914 10 C -0.220 4.220 11 C -0.111 4.111 12 C -0.272 4.272 13 C 0.065 3.935 14 N -0.306 5.306 15 C 0.284 3.716 16 O -0.451 6.451 17 C -0.156 4.156 18 C -0.129 4.129 19 C -0.196 4.196 20 S -0.149 6.149 21 C -0.260 4.260 22 H 0.100 0.900 23 H 0.121 0.879 24 H 0.140 0.860 25 H 0.151 0.849 26 H 0.262 0.738 27 H 0.153 0.847 28 H 0.147 0.853 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.068 0.932 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.073 -15.794 3.232 16.628 hybrid contribution -0.557 -0.151 0.514 0.772 sum 3.517 -15.945 3.746 16.752 Atomic orbital electron populations 1.69856 1.08693 1.30524 1.35750 1.26679 0.95594 1.04178 0.91180 0.85233 0.78939 0.76035 0.79646 1.18493 1.18502 1.18917 1.19751 0.97505 0.92791 1.43381 0.92010 1.17834 0.91921 0.92449 0.89201 1.21315 1.00146 0.97627 1.02950 1.20851 0.98891 0.92291 0.99093 1.20503 1.01671 0.98010 1.07058 1.17537 0.95412 0.84652 0.95943 1.43440 1.08175 1.13866 1.65134 1.21807 0.81568 0.90330 0.77875 1.90768 1.55805 1.47995 1.50580 1.21641 0.95747 0.93759 1.04495 1.20981 0.94092 0.96046 1.01773 1.23126 0.88717 1.01688 1.06091 1.88057 1.13526 1.29278 1.84056 1.20944 1.04653 0.92335 1.08096 0.90009 0.87890 0.85978 0.84861 0.73835 0.84710 0.85336 0.91905 0.92410 0.87458 0.87100 0.93225 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.30 10.94 21.82 0.24 -44.07 16 2 C 0.04 2.05 5.16 85.25 0.44 2.49 16 3 Si 0.98 40.59 29.59 68.60 2.03 42.62 16 4 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 5 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 6 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 7 C -0.50 -29.70 9.05 23.46 0.21 -29.49 16 8 H 0.06 3.67 7.90 -2.91 -0.02 3.65 16 9 C 0.09 5.16 5.57 -21.31 -0.12 5.04 16 10 C -0.20 -10.90 8.69 22.75 0.20 -10.71 16 11 C -0.09 -4.23 10.02 22.20 0.22 -4.01 16 12 C -0.25 -10.40 9.97 22.58 0.23 -10.17 16 13 C 0.16 6.99 6.25 38.10 0.24 7.22 16 14 N -0.66 -21.00 5.34 -303.66 -1.62 -22.62 16 15 C 0.49 15.81 7.56 87.66 0.66 16.47 16 16 O -0.57 -25.57 13.73 -3.07 -0.04 -25.61 16 17 C -0.12 -1.94 5.70 29.85 0.17 -1.77 16 18 C -0.09 -1.81 4.51 30.59 0.14 -1.67 16 19 C -0.05 -0.64 6.30 71.98 0.45 -0.18 16 20 S -0.30 -5.79 25.88 -56.49 -1.46 -7.25 16 21 C -0.24 -12.91 8.39 22.85 0.19 -12.72 16 22 H 0.29 13.94 8.30 -92.70 -0.77 13.17 16 23 H 0.10 5.81 6.17 -2.91 -0.02 5.79 16 24 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 25 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 26 H 0.42 8.99 8.82 -92.71 -0.82 8.18 16 27 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.54 8.10 -2.39 -0.02 1.52 16 30 H 0.06 1.48 8.10 -2.39 -0.02 1.46 16 31 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.10 1.59 9.07 73.35 0.67 2.25 16 34 H 0.08 4.78 6.48 -2.91 -0.02 4.76 16 Total: -1.00 -74.48 305.58 3.15 -71.33 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.98 Total: 25.10 kcal Atomic # 6 Polarization: -42.54 SS G_CDS: 3.03 Total: -39.50 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: -1.38 Total: -66.68 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.04 Total: -25.61 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Atomic # 16 Polarization: -5.79 SS G_CDS: -1.46 Total: -7.25 kcal Total: -74.48 3.15 -71.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313450965.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.876 kcal (2) G-P(sol) polarization free energy of solvation -74.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds