Wall clock time and date at job start Mon Mar 30 2020 06:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39809 * 120.11107 * 260.27823 * 3 2 1 5 5 C 1.37664 * 119.92678 * 179.69618 * 4 3 2 6 6 C 1.39051 * 120.16051 * 0.58221 * 5 4 3 7 7 O 1.35748 * 119.88912 * 179.69402 * 6 5 4 8 8 C 1.42907 * 116.99991 * 0.02562 * 7 6 5 9 9 C 1.52995 * 109.47194 * 179.97438 * 8 7 6 10 10 O 1.42896 * 109.47409 * 64.99793 * 9 8 7 11 11 C 1.42897 * 114.00286 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.47540 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99241 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00351 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99862 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00135 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47286 * 59.99678 * 16 14 12 18 18 H 1.48501 * 109.46985 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.46950 * 299.99736 * 16 14 12 20 20 C 1.38835 * 120.22713 * 359.71632 * 6 5 4 21 21 C 1.38055 * 120.07269 * 359.97438 * 20 6 5 22 22 F 1.35098 * 120.08359 * 179.97438 * 21 20 6 23 23 H 1.08005 * 120.04068 * 359.97438 * 4 3 2 24 24 H 1.08000 * 119.92501 * 180.27925 * 5 4 3 25 25 H 1.09002 * 109.46661 * 299.99619 * 8 7 6 26 26 H 1.08999 * 109.47049 * 59.99782 * 8 7 6 27 27 H 1.09005 * 109.46896 * 185.00102 * 9 8 7 28 28 H 1.09004 * 109.47102 * 304.99899 * 9 8 7 29 29 H 1.09000 * 109.47455 * 299.99966 * 11 10 9 30 30 H 1.09006 * 109.47355 * 59.99921 * 11 10 9 31 31 H 0.96995 * 119.99737 * 180.02562 * 15 14 12 32 32 H 1.08000 * 119.96166 * 179.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2693 0.2052 1.1921 5 6 4.6459 0.1988 1.1888 6 6 5.3408 0.0015 0.0006 7 8 6.6983 0.0024 0.0027 8 6 7.3450 0.2113 1.2598 9 6 8.8620 0.1789 1.0645 10 8 9.2607 1.2808 0.2467 11 6 10.6671 1.3441 0.0019 12 6 10.9729 2.5380 -0.8655 13 1 10.1730 3.1835 -1.1969 14 6 12.2735 2.8055 -1.2366 15 7 13.2475 2.0190 -0.8333 16 14 12.6526 4.2857 -2.3111 17 1 12.2149 5.5247 -1.6193 18 1 14.1142 4.3514 -2.5655 19 1 11.9301 4.1581 -3.6023 20 6 4.6510 -0.1961 -1.1880 21 6 3.2705 -0.1979 -1.1945 22 9 2.5990 -0.3896 -2.3511 23 1 2.7317 0.3635 2.1153 24 1 5.1876 0.3523 2.1104 25 1 7.0508 1.1803 1.6631 26 1 7.0515 -0.5757 1.9545 27 1 9.3548 0.2492 2.0343 28 1 9.1461 -0.7550 0.5795 29 1 11.1970 1.4389 0.9497 30 1 10.9891 0.4343 -0.5050 31 1 14.1625 2.2074 -1.0941 32 1 5.1950 -0.3485 -2.1084 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338552159.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:15 Heat of formation + Delta-G solvation = -78.106550 kcal Electronic energy + Delta-G solvation = -18259.026926 eV Core-core repulsion = 14906.954371 eV Total energy + Delta-G solvation = -3352.072555 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.35820 -40.45808 -38.16772 -36.79422 -36.22444 -32.85178 -31.69431 -30.73674 -29.72650 -27.01779 -24.05566 -23.80311 -22.43070 -21.85075 -19.46468 -18.66958 -17.21303 -16.54972 -16.51500 -16.35826 -16.02454 -15.23708 -15.00624 -14.58751 -14.48636 -14.22367 -13.94000 -13.91477 -13.58994 -13.29523 -12.63713 -12.52629 -12.42507 -12.08780 -11.67250 -11.35546 -11.17390 -10.86977 -10.84675 -10.66963 -10.11399 -9.34790 -9.20417 -8.94883 -8.61829 -8.28224 -6.16653 -4.18760 0.38920 0.75103 2.37444 2.59918 2.80854 3.29452 3.32393 3.36094 3.39864 3.55666 3.81994 4.24593 4.30701 4.54079 4.60804 4.78030 4.89707 5.02550 5.19880 5.20313 5.40284 5.48289 5.64886 5.72116 5.76034 5.85476 5.95469 6.19908 6.97050 7.09358 7.21464 7.32716 7.72561 8.06297 8.44254 8.93097 9.46320 10.94779 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.031249 B = 0.003200 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.811681 B = 8746.905135 C = 9258.603275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.262 3.738 3 C -0.117 4.117 4 C 0.002 3.998 5 C -0.226 4.226 6 C 0.204 3.796 7 O -0.285 6.285 8 C 0.060 3.940 9 C 0.061 3.939 10 O -0.390 6.390 11 C 0.195 3.805 12 C -0.517 4.517 13 H 0.067 0.933 14 C 0.057 3.943 15 N -0.899 5.899 16 Si 0.909 3.091 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.194 4.194 21 C 0.190 3.810 22 F -0.123 7.123 23 H 0.145 0.855 24 H 0.147 0.853 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.006 0.994 30 H 0.008 0.992 31 H 0.265 0.735 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.668 -6.174 5.675 17.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.095 5.095 2 C -0.053 4.053 3 C -0.121 4.121 4 C -0.018 4.018 5 C -0.245 4.245 6 C 0.155 3.845 7 O -0.196 6.196 8 C -0.014 4.014 9 C -0.017 4.017 10 O -0.310 6.310 11 C 0.121 3.879 12 C -0.555 4.555 13 H 0.085 0.915 14 C -0.144 4.144 15 N -0.538 5.538 16 Si 0.736 3.264 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.213 4.213 21 C 0.168 3.832 22 F -0.101 7.101 23 H 0.163 0.837 24 H 0.165 0.835 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.024 0.976 30 H 0.025 0.975 31 H 0.075 0.925 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -17.206 -6.093 5.382 19.030 hybrid contribution 0.887 0.513 -0.439 1.115 sum -16.318 -5.580 4.943 17.940 Atomic orbital electron populations 1.81238 1.11840 1.09621 1.06754 1.25294 0.92227 0.93580 0.94220 1.15827 0.84993 1.17066 0.94257 1.20796 0.93252 0.91768 0.96009 1.21317 0.94602 1.10101 0.98455 1.18994 0.83837 0.88932 0.92784 1.86270 1.14569 1.84102 1.34675 1.23185 0.93172 1.01703 0.83370 1.22297 0.90505 0.92688 0.96226 1.87919 1.28387 1.45301 1.69434 1.20239 0.74743 0.97346 0.95546 1.21002 0.93046 1.10461 1.31026 0.91521 1.24946 0.95731 0.97321 0.96440 1.69946 1.00213 1.38070 1.45546 0.86379 0.77068 0.82263 0.80688 1.19984 1.21134 1.19928 1.20231 0.91214 1.10464 0.99438 1.17136 0.89058 0.96670 0.80350 1.91565 1.80171 1.91755 1.46634 0.83730 0.83503 0.90493 0.90523 0.91778 0.93048 0.97581 0.97465 0.92522 0.82518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.52 18.54 41.83 0.78 -4.75 16 2 C 0.26 2.91 14.97 -22.47 -0.34 2.57 16 3 C -0.12 -1.09 5.75 -106.72 -0.61 -1.70 16 4 C 0.00 0.02 9.75 -39.20 -0.38 -0.37 16 5 C -0.23 -1.80 9.01 -39.49 -0.36 -2.15 16 6 C 0.20 2.18 6.69 -39.06 -0.26 1.92 16 7 O -0.29 -3.83 10.09 -23.80 -0.24 -4.07 16 8 C 0.06 0.70 5.12 37.15 0.19 0.89 16 9 C 0.06 0.95 6.32 37.15 0.23 1.19 16 10 O -0.39 -8.76 10.29 -40.08 -0.41 -9.17 16 11 C 0.20 5.10 5.69 36.01 0.20 5.31 16 12 C -0.52 -14.80 9.43 -34.44 -0.32 -15.13 16 13 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.20 13.29 55.43 0.74 -25.47 16 16 Si 0.91 21.37 29.54 -169.99 -5.02 16.35 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 C -0.19 -2.02 9.95 -39.43 -0.39 -2.41 16 21 C 0.19 1.93 7.27 -38.99 -0.28 1.65 16 22 F -0.12 -1.38 16.81 2.25 0.04 -1.34 16 23 H 0.14 0.67 8.06 -52.48 -0.42 0.24 16 24 H 0.15 0.86 6.27 -52.49 -0.33 0.53 16 25 H 0.08 0.83 7.65 -51.93 -0.40 0.43 16 26 H 0.08 0.59 7.65 -51.93 -0.40 0.19 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 301.66 15.07 4.55 4.55 Total: -1.00 -32.15 301.66 -5.20 -37.35 By element: Atomic # 1 Polarization: -3.51 SS G_CDS: -3.21 Total: -6.71 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -2.42 Total: -6.73 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 1.51 Total: -30.21 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.65 Total: -13.24 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.15 -5.20 -37.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338552159.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.760 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds