Wall clock time and date at job start Mon Mar 30 2020 06:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39809 * 120.11107 * 260.27823 * 3 2 1 5 5 C 1.37664 * 119.92678 * 179.69618 * 4 3 2 6 6 C 1.39051 * 120.16051 * 0.58221 * 5 4 3 7 7 O 1.35748 * 119.88912 * 179.69402 * 6 5 4 8 8 C 1.42907 * 116.99991 * 0.02562 * 7 6 5 9 9 C 1.52995 * 109.47194 * 179.97438 * 8 7 6 10 10 O 1.42896 * 109.47409 * 64.99793 * 9 8 7 11 11 C 1.42897 * 114.00286 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.47540 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99241 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00351 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99862 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00135 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47286 * 59.99678 * 16 14 12 18 18 H 1.48501 * 109.46985 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.46950 * 299.99736 * 16 14 12 20 20 C 1.38835 * 120.22713 * 359.71632 * 6 5 4 21 21 C 1.38055 * 120.07269 * 359.97438 * 20 6 5 22 22 F 1.35098 * 120.08359 * 179.97438 * 21 20 6 23 23 H 1.08005 * 120.04068 * 359.97438 * 4 3 2 24 24 H 1.08000 * 119.92501 * 180.27925 * 5 4 3 25 25 H 1.09002 * 109.46661 * 299.99619 * 8 7 6 26 26 H 1.08999 * 109.47049 * 59.99782 * 8 7 6 27 27 H 1.09005 * 109.46896 * 185.00102 * 9 8 7 28 28 H 1.09004 * 109.47102 * 304.99899 * 9 8 7 29 29 H 1.09000 * 109.47455 * 299.99966 * 11 10 9 30 30 H 1.09006 * 109.47355 * 59.99921 * 11 10 9 31 31 H 0.96995 * 119.99737 * 180.02562 * 15 14 12 32 32 H 1.08000 * 119.96166 * 179.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2693 0.2052 1.1921 5 6 4.6459 0.1988 1.1888 6 6 5.3408 0.0015 0.0006 7 8 6.6983 0.0024 0.0027 8 6 7.3450 0.2113 1.2598 9 6 8.8620 0.1789 1.0645 10 8 9.2607 1.2808 0.2467 11 6 10.6671 1.3441 0.0019 12 6 10.9729 2.5380 -0.8655 13 1 10.1730 3.1835 -1.1969 14 6 12.2735 2.8055 -1.2366 15 7 13.2475 2.0190 -0.8333 16 14 12.6526 4.2857 -2.3111 17 1 12.2149 5.5247 -1.6193 18 1 14.1142 4.3514 -2.5655 19 1 11.9301 4.1581 -3.6023 20 6 4.6510 -0.1961 -1.1880 21 6 3.2705 -0.1979 -1.1945 22 9 2.5990 -0.3896 -2.3511 23 1 2.7317 0.3635 2.1153 24 1 5.1876 0.3523 2.1104 25 1 7.0508 1.1803 1.6631 26 1 7.0515 -0.5757 1.9545 27 1 9.3548 0.2492 2.0343 28 1 9.1461 -0.7550 0.5795 29 1 11.1970 1.4389 0.9497 30 1 10.9891 0.4343 -0.5050 31 1 14.1625 2.2074 -1.0941 32 1 5.1950 -0.3485 -2.1084 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338552159.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:15 Heat of formation + Delta-G solvation = -98.146799 kcal Electronic energy + Delta-G solvation = -18259.895936 eV Core-core repulsion = 14906.954371 eV Total energy + Delta-G solvation = -3352.941565 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.19585 -41.27123 -39.12357 -38.26988 -37.21692 -34.92914 -32.57546 -31.55802 -30.85678 -28.94794 -25.02708 -24.63266 -24.37492 -22.85213 -20.24180 -19.52946 -18.65630 -17.94547 -17.72094 -17.27165 -17.00331 -16.62290 -16.38795 -15.94237 -15.70792 -15.35203 -14.86901 -14.84363 -14.59572 -14.47230 -13.81721 -13.68425 -13.37031 -13.29526 -13.07253 -12.84280 -12.64506 -12.55608 -12.16178 -11.87188 -11.75332 -11.26935 -10.86354 -10.22492 -10.06372 -9.41057 -8.30902 -6.42659 -0.38658 0.06468 1.42072 1.45954 1.50259 1.54359 1.78576 1.97303 2.35937 2.63392 2.73716 3.03359 3.06685 3.15927 3.63732 3.87133 4.01918 4.06613 4.24005 4.29532 4.52707 4.59166 4.67034 4.76577 4.88526 4.90399 5.03502 5.14124 5.20991 5.45683 5.56276 5.97775 6.28218 6.35979 6.54746 6.83227 7.29213 8.80892 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.031249 B = 0.003200 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.811681 B = 8746.905135 C = 9258.603275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.281 3.719 3 C -0.118 4.118 4 C 0.020 3.980 5 C -0.212 4.212 6 C 0.190 3.810 7 O -0.319 6.319 8 C 0.064 3.936 9 C 0.045 3.955 10 O -0.409 6.409 11 C 0.209 3.791 12 C -0.550 4.550 13 H 0.061 0.939 14 C 0.008 3.992 15 N -0.930 5.930 16 Si 0.979 3.021 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.268 1.268 20 C -0.204 4.204 21 C 0.182 3.818 22 F -0.134 7.134 23 H 0.181 0.819 24 H 0.177 0.823 25 H 0.089 0.911 26 H 0.126 0.874 27 H 0.084 0.916 28 H 0.048 0.952 29 H -0.006 1.006 30 H -0.014 1.014 31 H 0.271 0.729 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.219 -5.530 6.941 18.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.033 4.033 3 C -0.123 4.123 4 C 0.000 4.000 5 C -0.230 4.230 6 C 0.141 3.859 7 O -0.231 6.231 8 C -0.010 4.010 9 C -0.032 4.032 10 O -0.329 6.329 11 C 0.134 3.866 12 C -0.588 4.588 13 H 0.079 0.921 14 C -0.191 4.191 15 N -0.569 5.569 16 Si 0.802 3.198 17 H -0.189 1.189 18 H -0.201 1.201 19 H -0.193 1.193 20 C -0.224 4.224 21 C 0.160 3.840 22 F -0.112 7.112 23 H 0.198 0.802 24 H 0.195 0.805 25 H 0.107 0.893 26 H 0.143 0.857 27 H 0.102 0.898 28 H 0.066 0.934 29 H 0.011 0.989 30 H 0.003 0.997 31 H 0.080 0.920 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -17.781 -5.463 6.662 19.758 hybrid contribution 1.030 0.228 -0.782 1.313 sum -16.752 -5.235 5.879 18.509 Atomic orbital electron populations 1.81259 1.13025 1.11160 1.08056 1.25476 0.92376 0.92415 0.93028 1.15946 0.84084 1.17502 0.94797 1.21158 0.93008 0.89516 0.96291 1.21602 0.94777 1.08309 0.98347 1.19149 0.82944 0.89950 0.93813 1.86204 1.16151 1.84871 1.35880 1.23262 0.89874 1.04239 0.83600 1.22742 0.94053 0.90401 0.95985 1.87855 1.25795 1.48211 1.71054 1.19820 0.76907 0.95615 0.94237 1.21384 0.93571 1.11563 1.32265 0.92114 1.25911 0.95311 1.00361 0.97516 1.70047 1.00728 1.39709 1.46389 0.85287 0.77281 0.78448 0.78748 1.18909 1.20070 1.19259 1.20230 0.91351 1.11098 0.99680 1.17200 0.88993 0.97445 0.80376 1.91537 1.80334 1.91983 1.47394 0.80218 0.80545 0.89323 0.85673 0.89808 0.93412 0.98865 0.99663 0.92043 0.83212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.74 18.54 19.00 0.35 -11.39 16 2 C 0.28 5.86 14.97 88.33 1.32 7.18 16 3 C -0.12 -1.98 5.75 -21.23 -0.12 -2.10 16 4 C 0.02 0.22 9.75 22.51 0.22 0.44 16 5 C -0.21 -2.56 9.01 22.33 0.20 -2.36 16 6 C 0.19 3.71 6.69 22.61 0.15 3.86 16 7 O -0.32 -8.13 10.09 -86.09 -0.87 -9.00 16 8 C 0.06 1.31 5.12 71.98 0.37 1.68 16 9 C 0.04 1.37 6.32 71.98 0.45 1.83 16 10 O -0.41 -18.52 10.29 -144.34 -1.49 -20.00 16 11 C 0.21 11.22 5.69 71.24 0.41 11.63 16 12 C -0.55 -31.99 9.43 25.60 0.24 -31.75 16 13 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 14 C 0.01 0.43 5.46 84.65 0.46 0.90 16 15 N -0.93 -54.62 13.29 21.45 0.28 -54.33 16 16 Si 0.98 43.51 29.54 68.60 2.03 45.54 16 17 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 18 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 20 C -0.20 -4.17 9.95 22.37 0.22 -3.95 16 21 C 0.18 3.58 7.27 22.65 0.16 3.75 16 22 F -0.13 -3.04 16.81 44.97 0.76 -2.28 16 23 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 24 H 0.18 1.10 6.27 -2.91 -0.02 1.08 16 25 H 0.09 1.60 7.65 -2.39 -0.02 1.59 16 26 H 0.13 1.35 7.65 -2.39 -0.02 1.33 16 27 H 0.08 2.21 8.14 -2.38 -0.02 2.20 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 30 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 31 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 32 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -71.32 301.66 6.31 -65.01 By element: Atomic # 1 Polarization: -5.78 SS G_CDS: 1.15 Total: -4.63 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 4.09 Total: -8.91 kcal Atomic # 7 Polarization: -66.36 SS G_CDS: 0.64 Total: -65.72 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -2.35 Total: -29.00 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.76 Total: -2.28 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -71.32 6.31 -65.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338552159.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.132 kcal (2) G-P(sol) polarization free energy of solvation -71.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds