Wall clock time and date at job start Mon Mar 30 2020 06:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39966 * 120.21286 * 195.73622 * 3 2 1 5 5 F 1.35104 * 120.07676 * 359.97438 * 4 3 2 6 6 C 1.38132 * 119.83831 * 180.02562 * 4 3 2 7 7 C 1.38406 * 120.26622 * 359.97378 * 6 4 3 8 8 C 1.38163 * 120.43487 * 0.02562 * 7 6 4 9 9 C 1.38595 * 120.15477 * 0.02562 * 8 7 6 10 10 O 1.35710 * 120.13528 * 179.70595 * 9 8 7 11 11 C 1.42905 * 117.00062 * 359.97438 * 10 9 8 12 12 C 1.52998 * 109.47200 * 180.02562 * 11 10 9 13 13 O 1.42903 * 109.47171 * 64.99978 * 12 11 10 14 14 C 1.42897 * 114.00321 * 179.97438 * 13 12 11 15 15 C 1.50694 * 109.47264 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00252 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99864 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99740 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00299 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47229 * 89.99644 * 19 17 15 21 21 H 1.48490 * 109.47413 * 210.00163 * 19 17 15 22 22 H 1.48504 * 109.46883 * 330.00233 * 19 17 15 23 23 H 1.08004 * 119.86840 * 180.02562 * 6 4 3 24 24 H 1.08005 * 119.78403 * 179.97438 * 7 6 4 25 25 H 1.07999 * 119.92371 * 179.97438 * 8 7 6 26 26 H 1.09000 * 109.47012 * 300.00507 * 11 10 9 27 27 H 1.08999 * 109.47030 * 60.00334 * 11 10 9 28 28 H 1.08992 * 109.47127 * 184.99690 * 12 11 10 29 29 H 1.09000 * 109.47261 * 305.00495 * 12 11 10 30 30 H 1.09005 * 109.47120 * 300.00119 * 14 13 12 31 31 H 1.09001 * 109.46890 * 60.00060 * 14 13 12 32 32 H 0.97002 * 119.99526 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2718 1.1652 0.3280 5 9 2.6017 2.2945 0.6458 6 6 4.6531 1.1572 0.3251 7 6 5.3434 0.0026 -0.0004 8 6 4.6599 -1.1532 -0.3259 9 6 3.2740 -1.1649 -0.3296 10 8 2.6031 -2.2987 -0.6552 11 6 3.3891 -3.4457 -0.9849 12 6 2.4650 -4.6175 -1.3221 13 8 1.7237 -4.3143 -2.5056 14 6 0.8257 -5.3496 -2.9102 15 6 0.1013 -4.9255 -4.1617 16 1 0.3059 -3.9616 -4.6037 17 6 -0.8234 -5.7677 -4.7420 18 7 -1.4560 -5.3973 -5.8339 19 14 -1.1778 -7.4347 -3.9772 20 1 -2.2831 -7.3034 -2.9942 21 1 -1.5722 -8.3934 -5.0404 22 1 0.0402 -7.9324 -3.2888 23 1 5.1967 2.0554 0.5785 24 1 6.4234 0.0052 -0.0006 25 1 5.2068 -2.0494 -0.5789 26 1 4.0180 -3.2199 -1.8461 27 1 4.0182 -3.7114 -0.1353 28 1 3.0614 -5.5148 -1.4868 29 1 1.7755 -4.7862 -0.4949 30 1 1.3885 -6.2619 -3.1081 31 1 0.1023 -5.5340 -2.1160 32 1 -2.1063 -5.9900 -6.2423 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338557740.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:38 Heat of formation + Delta-G solvation = -70.275594 kcal Electronic energy + Delta-G solvation = -18666.473559 eV Core-core repulsion = 15314.740580 eV Total energy + Delta-G solvation = -3351.732979 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.33206 -40.53261 -37.93946 -36.72163 -36.32002 -32.74702 -31.81240 -30.66140 -29.69324 -27.63474 -24.38199 -23.65788 -21.96915 -21.78163 -19.61697 -18.31906 -17.28184 -16.86213 -16.53226 -16.50028 -15.99633 -15.39139 -15.10425 -14.95640 -14.65984 -14.24998 -13.55711 -13.44241 -13.31228 -12.88785 -12.81029 -12.51686 -12.41230 -12.07686 -11.85290 -11.59625 -11.34702 -10.97752 -10.84999 -10.66591 -9.90453 -9.24510 -9.22895 -8.96179 -8.64448 -8.54172 -6.13312 -4.13025 0.36884 0.85232 2.69671 2.74847 2.77927 3.23213 3.29434 3.30100 3.56493 3.68366 3.95132 4.29571 4.33435 4.43265 4.60905 4.65766 4.84683 4.91382 5.13620 5.17693 5.36643 5.50134 5.56871 5.60500 5.70869 5.82977 5.87189 6.23882 6.50242 6.92367 7.01993 7.54417 7.58576 7.90165 8.60094 8.97915 9.44881 10.99768 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.028025 B = 0.003977 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.863687 B = 7037.954700 C = 7614.592415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C 0.255 3.745 3 C -0.098 4.098 4 C 0.185 3.815 5 F -0.123 7.123 6 C -0.199 4.199 7 C -0.020 4.020 8 C -0.225 4.225 9 C 0.214 3.786 10 O -0.287 6.287 11 C 0.061 3.939 12 C 0.056 3.944 13 O -0.375 6.375 14 C 0.169 3.831 15 C -0.521 4.521 16 H 0.083 0.917 17 C 0.073 3.927 18 N -0.894 5.894 19 Si 0.876 3.124 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.266 1.266 23 H 0.146 0.854 24 H 0.143 0.857 25 H 0.146 0.854 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.005 0.995 31 H 0.000 1.000 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.412 8.528 14.910 25.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.071 5.071 2 C -0.061 4.061 3 C -0.104 4.104 4 C 0.162 3.838 5 F -0.101 7.101 6 C -0.218 4.218 7 C -0.039 4.039 8 C -0.244 4.244 9 C 0.163 3.837 10 O -0.197 6.197 11 C -0.013 4.013 12 C -0.022 4.022 13 O -0.294 6.294 14 C 0.094 3.906 15 C -0.559 4.559 16 H 0.101 0.899 17 C -0.129 4.129 18 N -0.532 5.532 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.191 1.191 23 H 0.164 0.836 24 H 0.161 0.839 25 H 0.164 0.836 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.022 0.978 31 H 0.018 0.982 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.269 8.613 14.650 23.526 hybrid contribution 0.171 -1.066 0.427 1.161 sum 16.440 7.547 15.076 23.548 Atomic orbital electron populations 1.81233 1.11644 1.06137 1.08079 1.24909 0.91948 0.94749 0.94471 1.15172 0.85538 0.93243 1.16406 1.17265 0.89763 0.80570 0.96156 1.91563 1.80802 1.48272 1.89499 1.20938 0.91150 1.01102 1.08623 1.20979 1.00574 0.90613 0.91754 1.21318 0.92052 1.01321 1.09661 1.18719 0.90220 0.85610 0.89117 1.86272 1.35846 1.17642 1.79976 1.23165 0.94152 0.83624 1.00357 1.22377 0.94894 0.94087 0.90810 1.87985 1.56683 1.44223 1.40533 1.20638 0.87773 0.86554 0.95601 1.20866 1.21673 1.05623 1.07748 0.89936 1.24766 0.95222 0.98146 0.94764 1.69876 1.26498 1.37167 1.19636 0.86846 0.79243 0.84181 0.79440 1.19871 1.20693 1.19125 0.83610 0.83878 0.83603 0.90203 0.90275 0.91521 0.92973 0.97761 0.98200 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -7.59 18.54 41.84 0.78 -6.82 16 2 C 0.25 4.23 14.52 -22.47 -0.33 3.91 16 3 C -0.10 -1.27 5.76 -106.59 -0.61 -1.88 16 4 C 0.18 1.91 7.28 -38.97 -0.28 1.62 16 5 F -0.12 -1.40 16.81 2.25 0.04 -1.36 16 6 C -0.20 -1.40 10.01 -39.56 -0.40 -1.79 16 7 C -0.02 -0.12 10.03 -39.55 -0.40 -0.52 16 8 C -0.22 -1.79 9.03 -39.48 -0.36 -2.14 16 9 C 0.21 2.57 6.69 -38.71 -0.26 2.31 16 10 O -0.29 -4.30 9.53 -23.68 -0.23 -4.52 16 11 C 0.06 0.74 5.12 37.16 0.19 0.93 16 12 C 0.06 0.89 6.32 37.16 0.23 1.12 16 13 O -0.38 -8.62 10.29 -40.08 -0.41 -9.03 16 14 C 0.17 4.30 4.76 36.00 0.17 4.47 16 15 C -0.52 -15.74 9.99 -34.44 -0.34 -16.09 16 16 H 0.08 2.74 8.06 -52.49 -0.42 2.32 16 17 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 18 N -0.89 -27.95 13.96 55.43 0.77 -27.18 16 19 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 23 H 0.15 0.66 8.06 -52.48 -0.42 0.23 16 24 H 0.14 0.37 8.06 -52.48 -0.42 -0.05 16 25 H 0.15 0.83 6.29 -52.49 -0.33 0.50 16 26 H 0.08 0.88 7.67 -51.93 -0.40 0.48 16 27 H 0.08 0.61 7.66 -51.93 -0.40 0.21 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.00 0.11 7.20 -51.93 -0.37 -0.26 16 31 H 0.00 0.01 7.57 -51.93 -0.39 -0.39 16 32 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 297.47 15.07 4.48 4.48 Total: -1.00 -35.74 297.47 -4.89 -40.63 By element: Atomic # 1 Polarization: -3.86 SS G_CDS: -3.17 Total: -7.03 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -2.48 Total: -5.98 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 1.55 Total: -34.00 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.64 Total: -13.55 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -35.74 -4.89 -40.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338557740.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.647 kcal (2) G-P(sol) polarization free energy of solvation -35.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds