Wall clock time and date at job start Mon Mar 30 2020 06:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39966 * 120.21286 * 195.73622 * 3 2 1 5 5 F 1.35104 * 120.07676 * 359.97438 * 4 3 2 6 6 C 1.38132 * 119.83831 * 180.02562 * 4 3 2 7 7 C 1.38406 * 120.26622 * 359.97378 * 6 4 3 8 8 C 1.38163 * 120.43487 * 0.02562 * 7 6 4 9 9 C 1.38595 * 120.15477 * 0.02562 * 8 7 6 10 10 O 1.35710 * 120.13528 * 179.70595 * 9 8 7 11 11 C 1.42905 * 117.00062 * 359.97438 * 10 9 8 12 12 C 1.52998 * 109.47200 * 180.02562 * 11 10 9 13 13 O 1.42903 * 109.47171 * 64.99978 * 12 11 10 14 14 C 1.42897 * 114.00321 * 179.97438 * 13 12 11 15 15 C 1.50694 * 109.47264 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00252 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99864 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99740 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00299 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47229 * 89.99644 * 19 17 15 21 21 H 1.48490 * 109.47413 * 210.00163 * 19 17 15 22 22 H 1.48504 * 109.46883 * 330.00233 * 19 17 15 23 23 H 1.08004 * 119.86840 * 180.02562 * 6 4 3 24 24 H 1.08005 * 119.78403 * 179.97438 * 7 6 4 25 25 H 1.07999 * 119.92371 * 179.97438 * 8 7 6 26 26 H 1.09000 * 109.47012 * 300.00507 * 11 10 9 27 27 H 1.08999 * 109.47030 * 60.00334 * 11 10 9 28 28 H 1.08992 * 109.47127 * 184.99690 * 12 11 10 29 29 H 1.09000 * 109.47261 * 305.00495 * 12 11 10 30 30 H 1.09005 * 109.47120 * 300.00119 * 14 13 12 31 31 H 1.09001 * 109.46890 * 60.00060 * 14 13 12 32 32 H 0.97002 * 119.99526 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2718 1.1652 0.3280 5 9 2.6017 2.2945 0.6458 6 6 4.6531 1.1572 0.3251 7 6 5.3434 0.0026 -0.0004 8 6 4.6599 -1.1532 -0.3259 9 6 3.2740 -1.1649 -0.3296 10 8 2.6031 -2.2987 -0.6552 11 6 3.3891 -3.4457 -0.9849 12 6 2.4650 -4.6175 -1.3221 13 8 1.7237 -4.3143 -2.5056 14 6 0.8257 -5.3496 -2.9102 15 6 0.1013 -4.9255 -4.1617 16 1 0.3059 -3.9616 -4.6037 17 6 -0.8234 -5.7677 -4.7420 18 7 -1.4560 -5.3973 -5.8339 19 14 -1.1778 -7.4347 -3.9772 20 1 -2.2831 -7.3034 -2.9942 21 1 -1.5722 -8.3934 -5.0404 22 1 0.0402 -7.9324 -3.2888 23 1 5.1967 2.0554 0.5785 24 1 6.4234 0.0052 -0.0006 25 1 5.2068 -2.0494 -0.5789 26 1 4.0180 -3.2199 -1.8461 27 1 4.0182 -3.7114 -0.1353 28 1 3.0614 -5.5148 -1.4868 29 1 1.7755 -4.7862 -0.4949 30 1 1.3885 -6.2619 -3.1081 31 1 0.1023 -5.5340 -2.1160 32 1 -2.1063 -5.9900 -6.2423 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338557740.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:38 Heat of formation + Delta-G solvation = -95.972550 kcal Electronic energy + Delta-G solvation = -18667.587862 eV Core-core repulsion = 15314.740580 eV Total energy + Delta-G solvation = -3352.847283 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.14860 -41.36859 -39.04233 -38.14105 -37.54975 -34.94038 -32.72931 -31.68836 -30.70854 -29.48871 -25.17865 -24.64510 -24.01155 -22.72940 -20.51782 -19.26472 -19.02681 -17.99207 -17.81579 -17.35696 -17.01078 -16.61040 -16.38791 -16.10049 -15.98365 -15.54034 -14.85866 -14.74532 -14.54908 -14.38821 -14.10257 -13.79238 -13.55757 -13.26445 -12.93279 -12.76708 -12.66968 -12.58097 -12.02438 -11.95472 -11.81331 -11.40252 -10.97769 -10.43666 -10.01684 -9.39513 -8.41455 -6.50444 -0.40768 0.16795 1.29875 1.34236 1.44610 1.50042 1.81601 1.89386 2.26112 2.62665 2.74028 2.91281 2.97433 3.17859 3.77039 3.89281 3.93919 4.09004 4.17163 4.29555 4.43808 4.46956 4.54640 4.70429 4.73592 4.95463 5.00518 5.11016 5.28514 5.38584 5.62567 5.87172 6.18150 6.38069 6.53948 6.68513 7.14069 8.76232 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.028025 B = 0.003977 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.863687 B = 7037.954700 C = 7614.592415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.272 3.728 3 C -0.138 4.138 4 C 0.171 3.829 5 F -0.136 7.136 6 C -0.180 4.180 7 C 0.004 3.996 8 C -0.214 4.214 9 C 0.195 3.805 10 O -0.332 6.332 11 C 0.062 3.938 12 C 0.040 3.960 13 O -0.410 6.410 14 C 0.180 3.820 15 C -0.552 4.552 16 H 0.024 0.976 17 C 0.010 3.990 18 N -0.944 5.944 19 Si 0.959 3.041 20 H -0.266 1.266 21 H -0.270 1.270 22 H -0.236 1.236 23 H 0.180 0.820 24 H 0.195 0.805 25 H 0.177 0.823 26 H 0.090 0.910 27 H 0.132 0.868 28 H 0.100 0.900 29 H 0.050 0.950 30 H 0.026 0.974 31 H 0.005 0.995 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.457 6.977 16.802 28.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.042 4.042 3 C -0.143 4.143 4 C 0.149 3.851 5 F -0.114 7.114 6 C -0.199 4.199 7 C -0.014 4.014 8 C -0.232 4.232 9 C 0.145 3.855 10 O -0.245 6.245 11 C -0.012 4.012 12 C -0.036 4.036 13 O -0.330 6.330 14 C 0.105 3.895 15 C -0.589 4.589 16 H 0.042 0.958 17 C -0.187 4.187 18 N -0.583 5.583 19 Si 0.780 3.220 20 H -0.191 1.191 21 H -0.195 1.195 22 H -0.159 1.159 23 H 0.197 0.803 24 H 0.212 0.788 25 H 0.194 0.806 26 H 0.108 0.892 27 H 0.150 0.850 28 H 0.117 0.883 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.023 0.977 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 20.348 7.086 16.558 27.173 hybrid contribution -0.902 -0.429 -0.171 1.014 sum 19.445 6.657 16.387 26.286 Atomic orbital electron populations 1.81200 1.13680 1.08448 1.11160 1.25778 0.93082 0.92792 0.92540 1.15557 0.83554 0.95392 1.19841 1.17573 0.91017 0.79434 0.97060 1.91530 1.81414 1.48743 1.89762 1.21421 0.89306 1.02938 1.06198 1.21598 1.02801 0.88793 0.88185 1.21724 0.89979 1.03382 1.08112 1.18970 0.91818 0.84336 0.90339 1.86195 1.38160 1.19202 1.80937 1.23349 0.93167 0.81781 1.02889 1.22886 0.95267 0.97581 0.87913 1.87923 1.57041 1.44188 1.43813 1.20321 0.88354 0.87562 0.93309 1.21201 1.23570 1.03875 1.10272 0.95773 1.25927 0.94286 1.03493 0.95026 1.70048 1.27295 1.39455 1.21517 0.85557 0.80282 0.77370 0.78800 1.19053 1.19498 1.15905 0.80279 0.78835 0.80586 0.89199 0.84994 0.88259 0.93188 0.95681 0.97745 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -19.71 18.54 19.00 0.35 -19.36 16 2 C 0.27 9.79 14.52 88.33 1.28 11.07 16 3 C -0.14 -3.64 5.76 -21.14 -0.12 -3.76 16 4 C 0.17 3.36 7.28 22.66 0.16 3.53 16 5 F -0.14 -3.12 16.81 44.97 0.76 -2.36 16 6 C -0.18 -1.77 10.01 22.28 0.22 -1.55 16 7 C 0.00 0.03 10.03 22.29 0.22 0.25 16 8 C -0.21 -2.46 9.03 22.34 0.20 -2.26 16 9 C 0.20 4.46 6.69 22.83 0.15 4.61 16 10 O -0.33 -9.89 9.53 -85.68 -0.82 -10.71 16 11 C 0.06 1.32 5.12 71.98 0.37 1.69 16 12 C 0.04 1.20 6.32 71.98 0.45 1.65 16 13 O -0.41 -19.07 10.29 -144.35 -1.49 -20.55 16 14 C 0.18 9.14 4.76 71.23 0.34 9.48 16 15 C -0.55 -34.77 9.99 25.60 0.26 -34.52 16 16 H 0.02 1.73 8.06 -2.91 -0.02 1.70 16 17 C 0.01 0.64 5.47 84.66 0.46 1.10 16 18 N -0.94 -61.18 13.96 21.45 0.30 -60.88 16 19 Si 0.96 43.99 27.47 68.60 1.88 45.88 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 22 H -0.24 -9.61 6.54 99.48 0.65 -8.96 16 23 H 0.18 0.62 8.06 -2.91 -0.02 0.60 16 24 H 0.19 -0.62 8.06 -2.91 -0.02 -0.64 16 25 H 0.18 0.94 6.29 -2.91 -0.02 0.92 16 26 H 0.09 1.71 7.67 -2.39 -0.02 1.69 16 27 H 0.13 1.39 7.66 -2.39 -0.02 1.37 16 28 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.03 1.17 7.20 -2.38 -0.02 1.16 16 31 H 0.00 0.24 7.57 -2.39 -0.02 0.22 16 32 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 Total: -1.00 -87.73 297.47 6.09 -81.64 By element: Atomic # 1 Polarization: -6.05 SS G_CDS: 1.09 Total: -4.96 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 4.01 Total: -8.69 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: 0.65 Total: -80.24 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -2.30 Total: -31.26 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.76 Total: -2.36 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.88 kcal Total: -87.73 6.09 -81.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338557740.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.334 kcal (2) G-P(sol) polarization free energy of solvation -87.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds