Wall clock time and date at job start Mon Mar 30 2020 06:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 S 1.75885 * 125.20227 * 2 1 4 4 C 1.75886 * 90.97085 * 180.02562 * 3 2 1 5 5 C 1.33391 * 109.58907 * 359.73262 * 4 3 2 6 6 C 1.33388 * 125.20296 * 180.02562 * 2 1 3 7 7 C 1.50699 * 122.54174 * 359.97438 * 6 2 1 8 8 C 1.50697 * 109.47484 * 84.99627 * 7 6 2 9 9 O 1.21300 * 119.99808 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00016 * 180.02562 * 8 7 6 11 11 C 1.37099 * 119.99657 * 179.97438 * 10 8 7 12 12 H 1.08007 * 119.99781 * 224.28146 * 11 10 8 13 13 C 1.38952 * 120.00387 * 44.28911 * 11 10 8 14 14 N 1.31416 * 119.99649 * 18.20329 * 13 11 10 15 15 Si 1.86795 * 120.00344 * 198.20541 * 13 11 10 16 16 H 1.48504 * 109.46960 * 89.99699 * 15 13 11 17 17 H 1.48495 * 109.47154 * 209.99862 * 15 13 11 18 18 H 1.48506 * 109.47144 * 330.00038 * 15 13 11 19 19 C 1.46497 * 120.00096 * 359.97438 * 10 8 7 20 20 C 1.53003 * 117.49888 * 183.22646 * 19 10 8 21 21 C 1.52995 * 117.49931 * 114.60407 * 19 10 8 22 22 H 1.08992 * 109.46871 * 269.97434 * 1 2 3 23 23 H 1.09002 * 109.46979 * 29.97429 * 1 2 3 24 24 H 1.09001 * 109.46652 * 149.97263 * 1 2 3 25 25 H 1.07995 * 125.20383 * 180.02562 * 4 3 2 26 26 H 1.08004 * 122.53692 * 180.23918 * 5 4 3 27 27 H 1.09005 * 109.46907 * 324.99769 * 7 6 2 28 28 H 1.08996 * 109.46956 * 205.00087 * 7 6 2 29 29 H 0.96994 * 119.99554 * 174.93714 * 14 13 11 30 30 H 1.09000 * 115.55059 * 328.93447 * 19 10 8 31 31 H 1.09005 * 117.49629 * 359.97438 * 20 19 10 32 32 H 1.08995 * 117.49856 * 145.01526 * 20 19 10 33 33 H 1.09007 * 117.50115 * 214.97573 * 21 19 10 34 34 H 1.08995 * 117.50205 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5210 1.4372 0.0000 4 6 3.9751 0.4478 -0.0008 5 6 3.6380 -0.8428 0.0049 6 6 2.2760 -1.0899 -0.0005 7 6 1.7052 -2.4847 -0.0005 8 6 1.3998 -2.9024 -1.4159 9 8 1.6240 -2.1425 -2.3343 10 7 0.8775 -4.1204 -1.6611 11 6 0.5991 -4.5002 -2.9487 12 1 -0.3337 -4.9949 -3.1761 13 6 1.5170 -4.2489 -3.9611 14 7 2.7696 -3.9868 -3.6621 15 14 0.9706 -4.2836 -5.7470 16 1 0.5243 -2.9272 -6.1546 17 1 2.1063 -4.7094 -6.6039 18 1 -0.1532 -5.2419 -5.9024 19 6 0.6072 -5.0384 -0.5519 20 6 0.0853 -6.4337 -0.9008 21 6 -0.8531 -5.4004 -0.2743 22 1 -0.3633 -0.0005 1.0276 23 1 -0.3633 0.8902 -0.5134 24 1 -0.3633 -0.8898 -0.5143 25 1 4.9863 0.8271 -0.0007 26 1 4.3721 -1.6350 0.0093 27 1 0.7887 -2.5022 0.5893 28 1 2.4298 -3.1737 0.4334 29 1 3.4255 -3.8840 -4.3692 30 1 1.2755 -4.9504 0.3047 31 1 -0.0574 -6.6685 -1.9557 32 1 0.4103 -7.2640 -0.2738 33 1 -1.1456 -5.5510 0.7650 34 1 -1.6129 -4.9553 -0.9166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344822453.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:04 Heat of formation + Delta-G solvation = 34.666885 kcal Electronic energy + Delta-G solvation = -18203.079866 eV Core-core repulsion = 15422.110710 eV Total energy + Delta-G solvation = -2780.969156 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.94954 -37.53259 -35.78936 -32.76859 -31.72620 -30.94316 -29.24677 -25.67323 -24.31524 -22.20876 -21.67442 -21.11337 -19.50783 -17.65313 -16.72210 -16.35705 -16.00620 -15.02181 -14.51699 -14.31137 -13.75909 -13.64118 -13.36234 -12.79443 -12.66122 -12.32473 -11.92362 -11.75920 -11.60111 -11.17039 -11.11162 -11.00244 -10.88713 -10.81904 -10.46709 -10.25981 -10.13830 -9.93924 -9.71452 -8.67907 -8.10046 -8.04687 -7.74136 -6.97171 -6.07065 -3.82454 1.47724 2.08444 2.40624 3.22275 3.32758 3.39121 3.42831 4.18420 4.31452 4.80344 4.93153 5.28234 5.32271 5.40914 5.58476 5.63407 5.74531 5.78248 5.82719 5.87623 6.04483 6.07935 6.17496 6.20524 6.23354 6.38364 6.48743 6.56088 6.76289 6.90920 6.95192 7.07625 7.65531 8.31986 9.11466 9.22870 9.71607 10.36821 11.01966 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.019214 B = 0.007262 C = 0.006047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.923830 B = 3854.815349 C = 4628.934650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.163 4.163 3 S 0.057 5.943 4 C -0.223 4.223 5 C -0.105 4.105 6 C -0.069 4.069 7 C -0.079 4.079 8 C 0.488 3.512 9 O -0.521 6.521 10 N -0.432 5.432 11 C -0.348 4.348 12 H 0.076 0.924 13 C 0.074 3.926 14 N -0.833 5.833 15 Si 0.910 3.090 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.274 1.274 19 C 0.076 3.924 20 C -0.174 4.174 21 C -0.209 4.209 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.080 0.920 25 H 0.158 0.842 26 H 0.136 0.864 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.263 0.737 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.751 3.611 9.995 10.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.280 4.280 3 S 0.320 5.680 4 C -0.357 4.357 5 C -0.136 4.136 6 C -0.081 4.081 7 C -0.122 4.122 8 C 0.275 3.725 9 O -0.398 6.398 10 N -0.154 5.154 11 C -0.475 4.475 12 H 0.093 0.907 13 C -0.136 4.136 14 N -0.466 5.466 15 Si 0.738 3.262 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.199 1.199 19 C -0.031 4.031 20 C -0.212 4.212 21 C -0.248 4.248 22 H 0.086 0.914 23 H 0.082 0.918 24 H 0.099 0.901 25 H 0.175 0.825 26 H 0.154 0.846 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.687 5.720 9.412 11.142 hybrid contribution 0.343 -1.694 -0.932 1.963 sum -1.343 4.026 8.480 9.483 Atomic orbital electron populations 1.20282 0.88284 1.03452 1.01680 1.24048 0.99466 0.94563 1.09905 1.83808 0.97932 1.10780 1.75524 1.25273 1.00992 0.96579 1.12896 1.20028 0.95879 0.96279 1.01409 1.18370 0.92602 0.95045 1.02075 1.20431 1.00929 0.92392 0.98494 1.19627 0.82225 0.82034 0.88636 1.90553 1.51953 1.51641 1.45605 1.42778 1.58644 1.09877 1.04059 1.18815 1.02647 1.43888 0.82159 0.90655 1.25221 0.94220 0.94753 0.99426 1.69822 1.01243 1.42235 1.33293 0.86252 0.78020 0.78429 0.83547 1.20378 1.21364 1.19943 1.21695 0.94314 0.93568 0.93501 1.23052 1.03728 0.92043 1.02381 1.23314 0.95496 1.05621 1.00359 0.91399 0.91792 0.90108 0.82484 0.84647 0.89927 0.90024 0.92707 0.88083 0.87531 0.89873 0.89851 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 9.78 36.01 0.35 -0.86 16 2 C -0.16 -2.91 6.50 -36.00 -0.23 -3.14 16 3 S 0.06 0.89 23.33 -107.50 -2.51 -1.62 16 4 C -0.22 -3.58 11.23 29.04 0.33 -3.26 16 5 C -0.11 -1.91 9.96 -41.21 -0.41 -2.32 16 6 C -0.07 -1.33 4.29 -106.25 -0.46 -1.79 16 7 C -0.08 -1.55 3.96 -29.04 -0.11 -1.66 16 8 C 0.49 12.22 6.70 -10.99 -0.07 12.15 16 9 O -0.52 -15.33 13.79 5.54 0.08 -15.26 16 10 N -0.43 -10.69 2.83 -107.73 -0.31 -10.99 16 11 C -0.35 -9.49 7.92 -14.93 -0.12 -9.61 16 12 H 0.08 2.00 7.26 -52.48 -0.38 1.62 16 13 C 0.07 2.10 4.39 -17.47 -0.08 2.03 16 14 N -0.83 -24.82 11.74 55.50 0.65 -24.17 16 15 Si 0.91 22.20 29.59 -169.99 -5.03 17.17 16 16 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 C 0.08 1.49 5.87 -67.93 -0.40 1.09 16 20 C -0.17 -3.12 9.80 -26.73 -0.26 -3.38 16 21 C -0.21 -3.50 10.36 -26.73 -0.28 -3.77 16 22 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.08 1.41 7.19 -51.93 -0.37 1.04 16 25 H 0.16 2.07 8.06 -52.49 -0.42 1.64 16 26 H 0.14 2.33 8.06 -52.48 -0.42 1.91 16 27 H 0.08 1.40 7.48 -51.93 -0.39 1.01 16 28 H 0.08 1.47 7.53 -51.93 -0.39 1.08 16 29 H 0.26 7.56 8.32 -40.82 -0.34 7.22 16 30 H 0.10 1.77 6.96 -51.93 -0.36 1.41 16 31 H 0.11 2.13 6.72 -51.93 -0.35 1.78 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 34 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 301.65 15.07 4.55 4.55 Total: -1.00 -32.85 301.65 -8.65 -41.50 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -4.34 Total: 3.34 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -1.74 Total: -14.52 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.35 Total: -35.16 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.08 Total: -15.26 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -2.51 Total: -1.62 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.85 -8.65 -41.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344822453.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.171 kcal (2) G-P(sol) polarization free energy of solvation -32.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds