Wall clock time and date at job start Mon Mar 30 2020 06:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 S 1.75885 * 125.20227 * 2 1 4 4 C 1.75886 * 90.97085 * 180.02562 * 3 2 1 5 5 C 1.33391 * 109.58907 * 359.73262 * 4 3 2 6 6 C 1.33388 * 125.20296 * 180.02562 * 2 1 3 7 7 C 1.50699 * 122.54174 * 359.97438 * 6 2 1 8 8 C 1.50697 * 109.47484 * 84.99627 * 7 6 2 9 9 O 1.21300 * 119.99808 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00016 * 180.02562 * 8 7 6 11 11 C 1.37099 * 119.99657 * 179.97438 * 10 8 7 12 12 H 1.08007 * 119.99781 * 224.28146 * 11 10 8 13 13 C 1.38952 * 120.00387 * 44.28911 * 11 10 8 14 14 N 1.31416 * 119.99649 * 18.20329 * 13 11 10 15 15 Si 1.86795 * 120.00344 * 198.20541 * 13 11 10 16 16 H 1.48504 * 109.46960 * 89.99699 * 15 13 11 17 17 H 1.48495 * 109.47154 * 209.99862 * 15 13 11 18 18 H 1.48506 * 109.47144 * 330.00038 * 15 13 11 19 19 C 1.46497 * 120.00096 * 359.97438 * 10 8 7 20 20 C 1.53003 * 117.49888 * 183.22646 * 19 10 8 21 21 C 1.52995 * 117.49931 * 114.60407 * 19 10 8 22 22 H 1.08992 * 109.46871 * 269.97434 * 1 2 3 23 23 H 1.09002 * 109.46979 * 29.97429 * 1 2 3 24 24 H 1.09001 * 109.46652 * 149.97263 * 1 2 3 25 25 H 1.07995 * 125.20383 * 180.02562 * 4 3 2 26 26 H 1.08004 * 122.53692 * 180.23918 * 5 4 3 27 27 H 1.09005 * 109.46907 * 324.99769 * 7 6 2 28 28 H 1.08996 * 109.46956 * 205.00087 * 7 6 2 29 29 H 0.96994 * 119.99554 * 174.93714 * 14 13 11 30 30 H 1.09000 * 115.55059 * 328.93447 * 19 10 8 31 31 H 1.09005 * 117.49629 * 359.97438 * 20 19 10 32 32 H 1.08995 * 117.49856 * 145.01526 * 20 19 10 33 33 H 1.09007 * 117.50115 * 214.97573 * 21 19 10 34 34 H 1.08995 * 117.50205 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5210 1.4372 0.0000 4 6 3.9751 0.4478 -0.0008 5 6 3.6380 -0.8428 0.0049 6 6 2.2760 -1.0899 -0.0005 7 6 1.7052 -2.4847 -0.0005 8 6 1.3998 -2.9024 -1.4159 9 8 1.6240 -2.1425 -2.3343 10 7 0.8775 -4.1204 -1.6611 11 6 0.5991 -4.5002 -2.9487 12 1 -0.3337 -4.9949 -3.1761 13 6 1.5170 -4.2489 -3.9611 14 7 2.7696 -3.9868 -3.6621 15 14 0.9706 -4.2836 -5.7470 16 1 0.5243 -2.9272 -6.1546 17 1 2.1063 -4.7094 -6.6039 18 1 -0.1532 -5.2419 -5.9024 19 6 0.6072 -5.0384 -0.5519 20 6 0.0853 -6.4337 -0.9008 21 6 -0.8531 -5.4004 -0.2743 22 1 -0.3633 -0.0005 1.0276 23 1 -0.3633 0.8902 -0.5134 24 1 -0.3633 -0.8898 -0.5143 25 1 4.9863 0.8271 -0.0007 26 1 4.3721 -1.6350 0.0093 27 1 0.7887 -2.5022 0.5893 28 1 2.4298 -3.1737 0.4334 29 1 3.4255 -3.8840 -4.3692 30 1 1.2755 -4.9504 0.3047 31 1 -0.0574 -6.6685 -1.9557 32 1 0.4103 -7.2640 -0.2738 33 1 -1.1456 -5.5510 0.7650 34 1 -1.6129 -4.9553 -0.9166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344822453.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:04 Heat of formation + Delta-G solvation = 15.542094 kcal Electronic energy + Delta-G solvation = -18203.909179 eV Core-core repulsion = 15422.110710 eV Total energy + Delta-G solvation = -2781.798469 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.62765 -38.99737 -37.47614 -34.73251 -33.12557 -32.74937 -30.81338 -27.33315 -25.98631 -23.59952 -23.06341 -22.71930 -21.29684 -19.11206 -18.21285 -18.00237 -17.74658 -16.78514 -16.21469 -15.89222 -15.48239 -15.17500 -14.76612 -14.25477 -14.21091 -13.80370 -13.50751 -13.36702 -13.02104 -12.86429 -12.76294 -12.71374 -12.46720 -12.29316 -12.14786 -12.03538 -11.63698 -11.58673 -11.17486 -10.71027 -9.92253 -9.36225 -9.15611 -8.90261 -8.17189 -5.94540 0.15757 0.80886 1.09985 1.34164 1.42652 1.46912 1.83082 2.29652 2.47355 3.14427 3.23224 3.41089 3.99772 4.07989 4.16564 4.21257 4.31609 4.37501 4.49668 4.60044 4.67548 4.71319 4.73777 4.79265 4.93004 5.09302 5.12895 5.23146 5.33213 5.49251 5.52753 5.55767 5.71402 6.23851 7.08298 7.28084 7.76481 8.45068 8.91128 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.019214 B = 0.007262 C = 0.006047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.923830 B = 3854.815349 C = 4628.934650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.181 4.181 3 S 0.095 5.905 4 C -0.220 4.220 5 C -0.134 4.134 6 C -0.097 4.097 7 C -0.064 4.064 8 C 0.477 3.523 9 O -0.577 6.577 10 N -0.448 5.448 11 C -0.352 4.352 12 H 0.075 0.925 13 C 0.023 3.977 14 N -0.870 5.870 15 Si 0.964 3.036 16 H -0.293 1.293 17 H -0.282 1.282 18 H -0.254 1.254 19 C 0.044 3.956 20 C -0.173 4.173 21 C -0.179 4.179 22 H 0.099 0.901 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.186 0.814 26 H 0.134 0.866 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.257 0.743 30 H 0.126 0.874 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.125 0.875 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.607 3.632 11.694 12.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.298 4.298 3 S 0.359 5.641 4 C -0.355 4.355 5 C -0.164 4.164 6 C -0.109 4.109 7 C -0.106 4.106 8 C 0.266 3.734 9 O -0.457 6.457 10 N -0.170 5.170 11 C -0.480 4.480 12 H 0.093 0.907 13 C -0.183 4.183 14 N -0.505 5.505 15 Si 0.790 3.210 16 H -0.220 1.220 17 H -0.208 1.208 18 H -0.177 1.177 19 C -0.061 4.061 20 C -0.211 4.211 21 C -0.218 4.218 22 H 0.117 0.883 23 H 0.091 0.909 24 H 0.074 0.926 25 H 0.203 0.797 26 H 0.152 0.848 27 H 0.125 0.875 28 H 0.111 0.889 29 H 0.066 0.934 30 H 0.143 0.857 31 H 0.097 0.903 32 H 0.134 0.866 33 H 0.144 0.856 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.576 5.692 11.140 12.772 hybrid contribution 0.545 -1.670 -1.396 2.244 sum -2.031 4.022 9.743 10.735 Atomic orbital electron populations 1.20319 0.87070 1.02648 1.03433 1.24458 1.00780 0.95398 1.09118 1.83618 0.96876 1.09175 1.74464 1.25682 1.02664 0.96119 1.11018 1.20155 0.95756 0.97290 1.03232 1.18511 0.93344 0.95200 1.03843 1.20272 1.02358 0.93072 0.94937 1.20526 0.80952 0.81545 0.90385 1.90501 1.54164 1.53244 1.47819 1.43014 1.58394 1.10940 1.04609 1.19042 1.02312 1.42748 0.83900 0.90717 1.25989 0.94320 0.94926 1.03090 1.69936 1.02159 1.44658 1.33788 0.85405 0.78340 0.77801 0.79489 1.22041 1.20804 1.17747 1.22022 0.97146 0.93984 0.92925 1.23103 1.03897 0.92408 1.01677 1.23322 0.93028 1.03193 1.02225 0.88257 0.90916 0.92552 0.79703 0.84792 0.87463 0.88883 0.93429 0.85683 0.90276 0.86555 0.85650 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.27 9.78 71.24 0.70 -1.57 16 2 C -0.18 -6.24 6.50 24.59 0.16 -6.08 16 3 S 0.10 2.84 23.33 -56.49 -1.32 1.52 16 4 C -0.22 -6.77 11.23 66.72 0.75 -6.03 16 5 C -0.13 -4.82 9.96 21.22 0.21 -4.60 16 6 C -0.10 -3.69 4.29 -20.92 -0.09 -3.78 16 7 C -0.06 -2.45 3.96 29.10 0.12 -2.33 16 8 C 0.48 24.23 6.70 87.66 0.59 24.81 16 9 O -0.58 -35.02 13.79 -3.09 -0.04 -35.06 16 10 N -0.45 -22.32 2.83 -613.13 -1.74 -24.05 16 11 C -0.35 -19.52 7.92 84.04 0.67 -18.85 16 12 H 0.08 4.02 7.26 -2.91 -0.02 4.00 16 13 C 0.02 1.32 4.39 84.93 0.37 1.69 16 14 N -0.87 -53.57 11.74 21.66 0.25 -53.31 16 15 Si 0.96 46.60 29.59 68.60 2.03 48.63 16 16 H -0.29 -14.80 7.11 99.48 0.71 -14.10 16 17 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 18 H -0.25 -11.24 7.11 99.48 0.71 -10.53 16 19 C 0.04 1.67 5.87 44.99 0.26 1.93 16 20 C -0.17 -5.84 9.80 30.60 0.30 -5.54 16 21 C -0.18 -5.48 10.36 30.59 0.32 -5.16 16 22 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 23 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.06 1.95 7.19 -2.39 -0.02 1.93 16 25 H 0.19 4.45 8.06 -2.91 -0.02 4.43 16 26 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 27 H 0.11 3.47 7.48 -2.38 -0.02 3.45 16 28 H 0.09 3.28 7.53 -2.39 -0.02 3.26 16 29 H 0.26 15.34 8.32 -92.71 -0.77 14.57 16 30 H 0.13 4.06 6.96 -2.39 -0.02 4.05 16 31 H 0.08 3.12 6.72 -2.38 -0.02 3.10 16 32 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 33 H 0.13 2.83 8.14 -2.38 -0.02 2.81 16 34 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -73.51 301.65 4.64 -68.88 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 1.10 Total: 18.92 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: 4.35 Total: -25.51 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -1.48 Total: -77.37 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -0.04 Total: -35.06 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -1.32 Total: 1.52 kcal Total: -73.51 4.64 -68.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344822453.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.419 kcal (2) G-P(sol) polarization free energy of solvation -73.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds