Wall clock time and date at job start Mon Mar 30 2020 06:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33818 * 122.45349 * 2 1 4 4 S 1.70610 * 110.95602 * 180.02562 * 3 2 1 5 5 C 1.75829 * 91.56572 * 359.97438 * 4 3 2 6 6 C 1.46586 * 125.46154 * 179.97438 * 5 4 3 7 7 O 1.21700 * 120.00297 * 165.60469 * 6 5 4 8 8 N 1.34779 * 119.99817 * 345.32189 * 6 5 4 9 9 C 1.46500 * 119.99992 * 355.40264 * 8 6 5 10 10 C 1.50699 * 109.47082 * 87.67063 * 9 8 6 11 11 H 1.07998 * 120.00302 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00139 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99727 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00241 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46923 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47399 * 119.99617 * 14 12 10 17 17 H 1.48506 * 109.46858 * 239.99474 * 14 12 10 18 18 C 1.46494 * 119.99789 * 175.39552 * 8 6 5 19 19 C 1.53000 * 117.50177 * 17.42735 * 18 8 6 20 20 C 1.52997 * 59.99976 * 252.50448 * 19 18 8 21 21 C 1.36647 * 109.08236 * 0.23229 * 5 4 3 22 22 H 1.09000 * 109.46961 * 89.97320 * 1 2 3 23 23 H 1.08995 * 109.47341 * 209.98018 * 1 2 3 24 24 H 1.08997 * 109.46525 * 329.97889 * 1 2 3 25 25 H 1.07999 * 124.51735 * 359.97438 * 3 2 1 26 26 H 1.08993 * 109.47215 * 207.67190 * 9 8 6 27 27 H 1.09003 * 109.47096 * 327.67344 * 9 8 6 28 28 H 0.96998 * 120.00103 * 180.02562 * 13 12 10 29 29 H 1.09004 * 115.54859 * 163.12769 * 18 8 6 30 30 H 1.09002 * 117.49752 * 359.97438 * 19 18 8 31 31 H 1.09001 * 117.50384 * 145.01755 * 19 18 8 32 32 H 1.08995 * 117.50084 * 252.50852 * 20 19 18 33 33 H 1.09001 * 117.52022 * 107.47942 * 20 19 18 34 34 H 1.08000 * 123.35360 * 179.74935 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1292 0.0000 4 16 3.8970 0.7891 -0.0007 5 6 3.5937 -0.9428 -0.0002 6 6 4.6231 -1.9864 -0.0010 7 8 4.3239 -3.1365 0.2614 8 7 5.8999 -1.6733 -0.2980 9 6 6.2416 -0.3119 -0.7178 10 6 6.5299 0.5311 0.4976 11 1 6.4646 0.0965 1.4841 12 6 6.8759 1.8576 0.3503 13 7 6.9548 2.3870 -0.8510 14 14 7.2339 2.9024 1.8568 15 1 7.0773 2.0761 3.0808 16 1 8.6241 3.4188 1.7821 17 1 6.2841 4.0430 1.9052 18 6 6.9460 -2.6942 -0.2008 19 6 6.5031 -4.1582 -0.1627 20 6 7.0396 -3.4880 1.1038 21 6 2.2446 -1.1601 -0.0048 22 1 -0.3633 0.0005 -1.0277 23 1 -0.3634 -0.8901 0.5135 24 1 -0.3632 0.8898 0.5142 25 1 1.8026 2.1231 -0.0004 26 1 7.1232 -0.3397 -1.3581 27 1 5.4057 0.1190 -1.2689 28 1 7.1986 3.3201 -0.9547 29 1 7.8777 -2.4633 -0.7174 30 1 5.4333 -4.3617 -0.2094 31 1 7.1433 -4.8907 -0.6542 32 1 8.0327 -3.7795 1.4454 33 1 6.3231 -3.2503 1.8900 34 1 1.8019 -2.1452 -0.0094 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379141134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:19 Heat of formation + Delta-G solvation = 32.843459 kcal Electronic energy + Delta-G solvation = -18170.230959 eV Core-core repulsion = 15389.182733 eV Total energy + Delta-G solvation = -2781.048225 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.59686 -37.44873 -35.58855 -34.46009 -32.41482 -30.13339 -27.42711 -27.06698 -24.36719 -23.04983 -21.82912 -21.51086 -18.94410 -18.16827 -16.98872 -16.61695 -15.80797 -15.18719 -14.60532 -14.58062 -14.16618 -13.51721 -13.31727 -12.94345 -12.58356 -12.47686 -12.30971 -12.14492 -11.50028 -11.46773 -11.31297 -11.24021 -10.95593 -10.82146 -10.60207 -10.40515 -9.79333 -9.75802 -9.33065 -8.84596 -8.62573 -8.06978 -7.60173 -7.40956 -6.42266 -4.45799 1.37734 2.57519 3.01231 3.04413 3.14863 3.19958 3.24633 3.76626 3.87826 4.15355 4.58756 4.92643 5.19817 5.47711 5.56435 5.60241 5.64942 5.77729 5.91563 5.92729 6.13227 6.15184 6.22139 6.27490 6.48035 6.58386 6.64945 6.89299 6.96389 7.03714 7.14916 7.49509 7.57095 7.73440 8.17523 8.57974 8.94234 9.14387 10.60851 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.012994 B = 0.011398 C = 0.006681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.355399 B = 2456.062419 C = 4189.892489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.141 4.141 3 C -0.334 4.334 4 S 0.393 5.607 5 C -0.293 4.293 6 C 0.592 3.408 7 O -0.559 6.559 8 N -0.568 5.568 9 C 0.221 3.779 10 C -0.530 4.530 11 H 0.072 0.928 12 C 0.077 3.923 13 N -0.871 5.871 14 Si 0.889 3.111 15 H -0.267 1.267 16 H -0.278 1.278 17 H -0.277 1.277 18 C 0.090 3.910 19 C -0.208 4.208 20 C -0.190 4.190 21 C -0.077 4.077 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.145 0.855 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.271 0.729 29 H 0.124 0.876 30 H 0.145 0.855 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.356 -2.587 0.189 5.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.154 4.154 3 C -0.472 4.472 4 S 0.674 5.326 5 C -0.415 4.415 6 C 0.382 3.618 7 O -0.442 6.442 8 N -0.295 5.295 9 C 0.100 3.900 10 C -0.575 4.575 11 H 0.090 0.910 12 C -0.130 4.130 13 N -0.507 5.507 14 Si 0.716 3.284 15 H -0.191 1.191 16 H -0.204 1.204 17 H -0.203 1.203 18 C -0.015 4.015 19 C -0.245 4.245 20 C -0.229 4.229 21 C -0.112 4.112 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.163 0.837 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.142 0.858 30 H 0.162 0.838 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.222 -1.991 0.177 3.791 hybrid contribution -1.006 0.025 0.808 1.290 sum -4.227 -1.966 0.985 4.765 Atomic orbital electron populations 1.20413 0.91471 1.01573 1.01192 1.18443 0.96508 0.91950 1.08496 1.26711 1.08467 1.02071 1.09901 1.86448 0.92627 0.94611 1.58955 1.24752 0.97361 0.99993 1.19370 1.17111 0.81608 0.86704 0.76391 1.90465 1.81718 1.19745 1.52309 1.47444 1.05323 1.12250 1.64528 1.19789 0.97833 0.75952 0.96436 1.21569 1.47107 0.95092 0.93705 0.91028 1.24953 0.94029 0.97634 0.96431 1.69925 1.45014 1.14385 1.21387 0.86530 0.78541 0.80384 0.82989 1.19070 1.20371 1.20257 1.21467 0.92573 0.86298 1.01206 1.24121 1.05799 0.94004 1.00570 1.23130 1.01738 1.05433 0.92593 1.20257 0.91188 0.98770 1.01004 0.92331 0.92363 0.92520 0.83703 0.93313 0.93324 0.91928 0.85801 0.83767 0.90278 0.89280 0.89089 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 10.13 36.01 0.36 -0.84 16 2 C -0.14 -2.49 5.78 -106.45 -0.62 -3.10 16 3 C -0.33 -6.07 10.67 29.18 0.31 -5.76 16 4 S 0.39 8.12 15.89 -107.50 -1.71 6.41 16 5 C -0.29 -6.23 6.08 -36.79 -0.22 -6.45 16 6 C 0.59 13.18 7.36 -12.89 -0.09 13.08 16 7 O -0.56 -12.81 12.77 5.19 0.07 -12.74 16 8 N -0.57 -12.26 2.83 -169.04 -0.48 -12.74 16 9 C 0.22 5.05 4.74 -5.19 -0.02 5.02 16 10 C -0.53 -12.68 6.61 -34.44 -0.23 -12.90 16 11 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 12 C 0.08 1.84 4.94 -17.82 -0.09 1.75 16 13 N -0.87 -21.50 13.29 55.43 0.74 -20.77 16 14 Si 0.89 19.01 29.54 -169.99 -5.02 13.99 16 15 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 16 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 17 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 18 C 0.09 1.71 6.62 -67.93 -0.45 1.26 16 19 C -0.21 -3.66 9.64 -26.73 -0.26 -3.91 16 20 C -0.19 -3.39 9.90 -26.73 -0.26 -3.66 16 21 C -0.08 -1.49 9.83 -40.43 -0.40 -1.89 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 24 H 0.06 0.71 8.12 -51.93 -0.42 0.28 16 25 H 0.15 2.32 8.06 -52.49 -0.42 1.90 16 26 H 0.05 1.15 8.00 -51.93 -0.42 0.73 16 27 H 0.05 1.15 5.04 -28.54 -0.14 1.00 16 28 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 29 H 0.12 2.15 8.07 -51.93 -0.42 1.73 16 30 H 0.15 2.89 4.94 -53.50 -0.26 2.63 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.09 1.80 7.83 -51.93 -0.41 1.40 16 34 H 0.13 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 294.73 15.07 4.44 4.44 Total: -1.00 -25.67 294.73 -8.08 -33.76 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -4.15 Total: 5.05 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -1.97 Total: -17.41 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.26 Total: -33.50 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.07 Total: -12.74 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Atomic # 16 Polarization: 8.12 SS G_CDS: -1.71 Total: 6.41 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -25.67 -8.08 -33.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379141134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.599 kcal (2) G-P(sol) polarization free energy of solvation -25.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds