Wall clock time and date at job start Mon Mar 30 2020 06:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33818 * 122.45349 * 2 1 4 4 S 1.70610 * 110.95602 * 180.02562 * 3 2 1 5 5 C 1.75829 * 91.56572 * 359.97438 * 4 3 2 6 6 C 1.46586 * 125.46154 * 179.97438 * 5 4 3 7 7 O 1.21700 * 120.00297 * 165.60469 * 6 5 4 8 8 N 1.34779 * 119.99817 * 345.32189 * 6 5 4 9 9 C 1.46500 * 119.99992 * 355.40264 * 8 6 5 10 10 C 1.50699 * 109.47082 * 87.67063 * 9 8 6 11 11 H 1.07998 * 120.00302 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00139 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99727 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00241 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46923 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47399 * 119.99617 * 14 12 10 17 17 H 1.48506 * 109.46858 * 239.99474 * 14 12 10 18 18 C 1.46494 * 119.99789 * 175.39552 * 8 6 5 19 19 C 1.53000 * 117.50177 * 17.42735 * 18 8 6 20 20 C 1.52997 * 59.99976 * 252.50448 * 19 18 8 21 21 C 1.36647 * 109.08236 * 0.23229 * 5 4 3 22 22 H 1.09000 * 109.46961 * 89.97320 * 1 2 3 23 23 H 1.08995 * 109.47341 * 209.98018 * 1 2 3 24 24 H 1.08997 * 109.46525 * 329.97889 * 1 2 3 25 25 H 1.07999 * 124.51735 * 359.97438 * 3 2 1 26 26 H 1.08993 * 109.47215 * 207.67190 * 9 8 6 27 27 H 1.09003 * 109.47096 * 327.67344 * 9 8 6 28 28 H 0.96998 * 120.00103 * 180.02562 * 13 12 10 29 29 H 1.09004 * 115.54859 * 163.12769 * 18 8 6 30 30 H 1.09002 * 117.49752 * 359.97438 * 19 18 8 31 31 H 1.09001 * 117.50384 * 145.01755 * 19 18 8 32 32 H 1.08995 * 117.50084 * 252.50852 * 20 19 18 33 33 H 1.09001 * 117.52022 * 107.47942 * 20 19 18 34 34 H 1.08000 * 123.35360 * 179.74935 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1292 0.0000 4 16 3.8970 0.7891 -0.0007 5 6 3.5937 -0.9428 -0.0002 6 6 4.6231 -1.9864 -0.0010 7 8 4.3239 -3.1365 0.2614 8 7 5.8999 -1.6733 -0.2980 9 6 6.2416 -0.3119 -0.7178 10 6 6.5299 0.5311 0.4976 11 1 6.4646 0.0965 1.4841 12 6 6.8759 1.8576 0.3503 13 7 6.9548 2.3870 -0.8510 14 14 7.2339 2.9024 1.8568 15 1 7.0773 2.0761 3.0808 16 1 8.6241 3.4188 1.7821 17 1 6.2841 4.0430 1.9052 18 6 6.9460 -2.6942 -0.2008 19 6 6.5031 -4.1582 -0.1627 20 6 7.0396 -3.4880 1.1038 21 6 2.2446 -1.1601 -0.0048 22 1 -0.3633 0.0005 -1.0277 23 1 -0.3634 -0.8901 0.5135 24 1 -0.3632 0.8898 0.5142 25 1 1.8026 2.1231 -0.0004 26 1 7.1232 -0.3397 -1.3581 27 1 5.4057 0.1190 -1.2689 28 1 7.1986 3.3201 -0.9547 29 1 7.8777 -2.4633 -0.7174 30 1 5.4333 -4.3617 -0.2094 31 1 7.1433 -4.8907 -0.6542 32 1 8.0327 -3.7795 1.4454 33 1 6.3231 -3.2503 1.8900 34 1 1.8019 -2.1452 -0.0094 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379141134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:19 Heat of formation + Delta-G solvation = 20.351232 kcal Electronic energy + Delta-G solvation = -18170.772662 eV Core-core repulsion = 15389.182733 eV Total energy + Delta-G solvation = -2781.589929 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.23729 -38.92160 -37.18953 -36.14982 -34.18503 -31.54391 -29.19951 -28.42499 -25.93989 -24.83734 -23.26490 -22.99912 -20.52260 -19.65715 -18.78031 -18.32147 -17.38580 -16.80441 -16.33540 -16.13638 -15.75577 -14.97829 -14.63417 -14.52188 -14.30418 -13.97676 -13.84669 -13.69470 -13.05399 -12.90803 -12.80206 -12.65946 -12.53325 -12.39340 -12.18951 -12.15657 -11.49146 -11.26233 -10.92148 -10.57498 -10.31640 -9.65040 -9.22600 -8.97579 -8.24640 -6.33397 -0.18960 0.98427 1.37030 1.45769 1.53110 1.54811 1.57250 2.15388 2.25354 2.40401 3.07933 3.11183 3.65407 4.01398 4.17748 4.22619 4.24818 4.43152 4.57359 4.67758 4.79757 4.82995 4.84959 4.90857 5.03297 5.11078 5.14286 5.16671 5.41718 5.60239 5.64741 5.73271 5.90665 5.94120 6.43819 6.73005 7.22174 7.31944 8.78676 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.012994 B = 0.011398 C = 0.006681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.355399 B = 2456.062419 C = 4189.892489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.140 4.140 3 C -0.321 4.321 4 S 0.347 5.653 5 C -0.319 4.319 6 C 0.582 3.418 7 O -0.574 6.574 8 N -0.572 5.572 9 C 0.232 3.768 10 C -0.533 4.533 11 H 0.054 0.946 12 C 0.051 3.949 13 N -0.894 5.894 14 Si 0.934 3.066 15 H -0.272 1.272 16 H -0.275 1.275 17 H -0.270 1.270 18 C 0.063 3.937 19 C -0.193 4.193 20 C -0.184 4.184 21 C -0.073 4.073 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.171 0.829 26 H 0.037 0.963 27 H 0.044 0.956 28 H 0.274 0.726 29 H 0.140 0.860 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.065 0.935 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.285 -2.497 0.444 5.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.152 4.152 3 C -0.459 4.459 4 S 0.625 5.375 5 C -0.440 4.440 6 C 0.373 3.627 7 O -0.459 6.459 8 N -0.298 5.298 9 C 0.110 3.890 10 C -0.577 4.577 11 H 0.072 0.928 12 C -0.154 4.154 13 N -0.531 5.531 14 Si 0.759 3.241 15 H -0.197 1.197 16 H -0.200 1.200 17 H -0.195 1.195 18 C -0.041 4.041 19 C -0.230 4.230 20 C -0.222 4.222 21 C -0.108 4.108 22 H 0.092 0.908 23 H 0.089 0.911 24 H 0.092 0.908 25 H 0.188 0.812 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.157 0.843 30 H 0.139 0.861 31 H 0.131 0.869 32 H 0.138 0.862 33 H 0.084 0.916 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.121 -1.908 0.434 4.562 hybrid contribution -0.852 -0.058 0.711 1.111 sum -4.973 -1.966 1.145 5.468 Atomic orbital electron populations 1.20499 0.88170 1.03111 1.02678 1.18853 0.98798 0.90849 1.06719 1.26808 1.06493 1.03588 1.09018 1.86421 0.95171 0.95069 1.60802 1.24833 0.98030 0.99796 1.21321 1.17361 0.82060 0.86895 0.76378 1.90467 1.82066 1.20171 1.53201 1.47481 1.05826 1.12321 1.64222 1.19566 0.96976 0.76584 0.95864 1.21446 1.47658 0.95495 0.93060 0.92782 1.25372 0.93809 0.98155 0.98099 1.69974 1.45855 1.14747 1.22520 0.85851 0.78543 0.79263 0.80466 1.19680 1.20028 1.19538 1.21837 0.92816 0.86668 1.02762 1.24025 1.05045 0.93563 1.00377 1.23142 1.02646 1.04826 0.91625 1.20585 0.90674 1.00001 0.99583 0.90762 0.91099 0.90828 0.81168 0.94510 0.93924 0.91672 0.84268 0.86113 0.86912 0.86233 0.91641 0.83892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.05 10.13 71.24 0.72 -1.33 16 2 C -0.14 -4.61 5.78 -21.05 -0.12 -4.73 16 3 C -0.32 -11.09 10.67 66.81 0.71 -10.38 16 4 S 0.35 14.36 15.89 -56.49 -0.90 13.46 16 5 C -0.32 -13.64 6.08 24.08 0.15 -13.49 16 6 C 0.58 26.42 7.36 86.42 0.64 27.06 16 7 O -0.57 -26.73 12.77 -4.35 -0.06 -26.79 16 8 N -0.57 -25.14 2.83 -806.94 -2.28 -27.42 16 9 C 0.23 10.84 4.74 85.63 0.41 11.25 16 10 C -0.53 -25.97 6.61 25.60 0.17 -25.80 16 11 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 12 C 0.05 2.43 4.94 84.65 0.42 2.85 16 13 N -0.89 -44.37 13.29 21.45 0.28 -44.08 16 14 Si 0.93 38.81 29.54 68.60 2.03 40.84 16 15 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 16 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 17 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 18 C 0.06 2.40 6.62 44.99 0.30 2.70 16 19 C -0.19 -6.59 9.64 30.59 0.29 -6.30 16 20 C -0.18 -6.42 9.90 30.59 0.30 -6.12 16 21 C -0.07 -2.73 9.83 21.72 0.21 -2.52 16 22 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.07 1.53 8.13 -2.39 -0.02 1.51 16 24 H 0.07 1.53 8.12 -2.39 -0.02 1.51 16 25 H 0.17 4.95 8.06 -2.91 -0.02 4.93 16 26 H 0.04 1.78 8.00 -2.39 -0.02 1.76 16 27 H 0.04 2.08 5.04 -17.26 -0.09 1.99 16 28 H 0.27 12.84 8.31 -92.71 -0.77 12.07 16 29 H 0.14 4.74 8.07 -2.38 -0.02 4.72 16 30 H 0.12 4.83 4.94 -27.24 -0.13 4.70 16 31 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 32 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 33 H 0.06 2.62 7.83 -2.39 -0.02 2.60 16 34 H 0.14 5.03 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -54.89 294.73 4.18 -50.71 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.90 Total: 20.09 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: 4.20 Total: -26.80 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -2.00 Total: -71.51 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.06 Total: -26.79 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Atomic # 16 Polarization: 14.36 SS G_CDS: -0.90 Total: 13.46 kcal Total: -54.89 4.18 -50.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379141134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.063 kcal (2) G-P(sol) polarization free energy of solvation -54.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds