Wall clock time and date at job start Mon Mar 30 2020 06:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35926 * 117.00336 * 2 1 4 4 C 1.37301 * 119.66765 * 179.97438 * 3 2 1 5 5 C 1.41850 * 120.43465 * 179.97438 * 4 3 2 6 6 N 1.32898 * 128.59530 * 179.97438 * 5 4 3 7 7 C 1.30538 * 117.96957 * 179.13054 * 6 5 4 8 8 C 1.40131 * 124.92477 * 180.23011 * 7 6 5 9 9 H 1.08005 * 119.99382 * 180.68909 * 8 7 6 10 10 C 1.40343 * 120.00103 * 0.69124 * 8 7 6 11 11 N 1.30593 * 120.00023 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99746 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47108 * 59.99877 * 12 10 8 14 14 H 1.48502 * 109.46779 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47351 * 299.99980 * 12 10 8 16 16 S 1.75841 * 110.13849 * 0.83184 * 7 6 5 17 17 C 1.40641 * 118.30342 * 359.75670 * 5 4 3 18 18 C 1.39823 * 120.37442 * 0.53834 * 17 5 4 19 19 O 1.35950 * 119.90479 * 179.70331 * 18 17 5 20 20 C 1.42905 * 116.99802 * 179.72797 * 19 18 17 21 21 C 1.38002 * 120.18795 * 359.42798 * 18 17 5 22 22 H 1.08999 * 109.47246 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46685 * 299.99957 * 1 2 3 24 24 H 1.08993 * 109.47330 * 59.99658 * 1 2 3 25 25 H 1.08005 * 119.77779 * 359.97438 * 4 3 2 26 26 H 0.97005 * 119.99625 * 180.02562 * 11 10 8 27 27 H 1.09001 * 109.47103 * 180.02562 * 20 19 18 28 28 H 1.09004 * 109.47054 * 299.99740 * 20 19 18 29 29 H 1.09000 * 109.47187 * 59.99795 * 20 19 18 30 30 H 1.08001 * 119.98771 * 180.27314 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 3.4177 1.2749 0.0005 5 6 4.0786 2.5300 0.0000 6 7 5.3840 2.7796 0.0008 7 6 5.7688 4.0268 -0.0174 8 6 7.1032 4.4547 -0.0239 9 1 7.3318 5.5102 -0.0281 10 6 8.1425 3.5115 -0.0250 11 7 7.8660 2.2352 -0.0205 12 14 9.9213 4.0820 -0.0343 13 1 10.1839 4.9039 1.1743 14 1 10.8201 2.8998 -0.0334 15 1 10.1739 4.8956 -1.2507 16 16 4.3699 5.0922 -0.0154 17 6 3.2937 3.6970 -0.0064 18 6 1.8982 3.6104 -0.0006 19 8 1.1487 4.7447 -0.0007 20 6 -0.2713 4.5840 -0.0007 21 6 1.2794 2.3769 -0.0006 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 3.9971 0.3634 0.0014 26 1 8.5844 1.5834 -0.0208 27 1 -0.7479 5.5643 -0.0013 28 1 -0.5745 4.0325 -0.8908 29 1 -0.5746 4.0326 0.8893 30 1 0.2013 2.3138 -0.0006 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380632696.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:00 Heat of formation + Delta-G solvation = -31.777367 kcal Electronic energy + Delta-G solvation = -17284.331542 eV Core-core repulsion = 14364.648053 eV Total energy + Delta-G solvation = -2919.683489 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.75032 -38.24388 -37.52898 -34.70339 -33.04068 -29.52784 -29.10915 -27.74018 -26.41191 -25.93672 -22.63555 -21.49186 -20.22582 -18.17998 -17.55604 -16.34305 -15.88874 -15.49549 -15.42919 -15.06407 -14.95518 -14.69691 -14.21669 -13.35273 -13.02150 -12.71845 -12.44891 -12.03150 -11.73473 -11.58026 -11.29383 -11.18255 -11.17921 -10.94444 -10.72846 -10.53511 -9.84443 -9.78498 -9.13696 -8.37047 -7.81462 -7.56977 -6.90554 -6.57575 -4.99437 1.87008 2.31896 2.82369 2.87909 2.90711 2.98972 3.35809 3.66907 3.67351 3.74433 3.84605 4.55039 5.20963 5.28535 5.31660 5.37575 5.39137 5.49729 5.61750 5.70881 5.87653 5.99010 6.11278 6.40724 6.63231 6.95074 7.04906 7.26939 7.28381 7.70758 7.73450 7.96440 8.16942 8.30070 9.69237 9.83797 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.027717 B = 0.006017 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.985202 B = 4652.659379 C = 5642.177081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.321 6.321 3 C 0.179 3.821 4 C -0.208 4.208 5 C 0.247 3.753 6 N -0.547 5.547 7 C 0.256 3.744 8 C -0.358 4.358 9 H 0.103 0.897 10 C 0.062 3.938 11 N -0.682 5.682 12 Si 0.928 3.072 13 H -0.258 1.258 14 H -0.271 1.271 15 H -0.258 1.258 16 S -0.108 6.108 17 C -0.293 4.293 18 C 0.229 3.771 19 O -0.317 6.317 20 C 0.032 3.968 21 C -0.364 4.364 22 H 0.091 0.909 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.123 0.877 26 H 0.289 0.711 27 H 0.092 0.908 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.899 0.026 -0.014 7.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.235 6.235 3 C 0.131 3.869 4 C -0.231 4.231 5 C 0.111 3.889 6 N -0.267 5.267 7 C 0.007 3.993 8 C -0.398 4.398 9 H 0.121 0.879 10 C -0.171 4.171 11 N -0.301 5.301 12 Si 0.750 3.250 13 H -0.182 1.182 14 H -0.195 1.195 15 H -0.182 1.182 16 S 0.146 5.854 17 C -0.413 4.413 18 C 0.180 3.820 19 O -0.230 6.230 20 C -0.064 4.064 21 C -0.387 4.387 22 H 0.109 0.891 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.141 0.859 26 H 0.101 0.899 27 H 0.110 0.890 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.339 0.603 -0.006 7.363 hybrid contribution -0.338 -0.638 -0.002 0.722 sum -7.677 -0.035 -0.008 7.677 Atomic orbital electron populations 1.22876 0.79720 1.02729 1.00842 1.86025 1.20319 1.27742 1.89372 1.18000 0.91244 0.82650 0.94970 1.19238 0.90114 0.96031 1.17712 1.18978 0.88221 0.91105 0.90580 1.66996 1.09973 1.16834 1.32935 1.23770 0.95183 0.86927 0.93440 1.19374 0.87467 0.95614 1.37321 0.87936 1.26256 1.02373 0.94452 0.93976 1.69953 1.35871 1.01819 1.22504 0.86021 0.78866 0.79596 0.80541 1.18226 1.19547 1.18221 1.84327 1.03259 1.13116 1.84725 1.22575 0.93702 0.96895 1.28127 1.17603 0.87751 0.84239 0.92456 1.86118 1.18030 1.30248 1.88600 1.22914 0.79764 1.02803 1.00889 1.20470 0.98664 0.91293 1.28227 0.89093 0.93276 0.93266 0.85871 0.89920 0.88988 0.93159 0.93154 0.86014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.80 101.05 0.99 1.42 16 2 O -0.32 -5.89 10.48 -19.51 -0.20 -6.09 16 3 C 0.18 3.79 6.65 -39.44 -0.26 3.52 16 4 C -0.21 -5.01 10.03 -38.54 -0.39 -5.40 16 5 C 0.25 6.58 6.93 -85.12 -0.59 5.99 16 6 N -0.55 -15.48 8.59 -10.29 -0.09 -15.57 16 7 C 0.26 6.91 7.03 -17.39 -0.12 6.79 16 8 C -0.36 -8.86 9.39 -38.08 -0.36 -9.22 16 9 H 0.10 2.29 7.85 -52.48 -0.41 1.87 16 10 C 0.06 1.44 5.50 -17.29 -0.10 1.35 16 11 N -0.68 -17.03 11.84 55.57 0.66 -16.38 16 12 Si 0.93 16.63 29.56 -169.99 -5.03 11.60 16 13 H -0.26 -4.53 7.11 56.52 0.40 -4.13 16 14 H -0.27 -4.73 7.11 56.52 0.40 -4.32 16 15 H -0.26 -4.53 7.11 56.52 0.40 -4.13 16 16 S -0.11 -2.69 23.33 -107.50 -2.51 -5.19 16 17 C -0.29 -7.44 6.49 -38.08 -0.25 -7.69 16 18 C 0.23 5.11 6.70 -39.08 -0.26 4.85 16 19 O -0.32 -6.30 10.50 -19.58 -0.21 -6.51 16 20 C 0.03 0.43 9.81 101.05 0.99 1.42 16 21 C -0.36 -7.23 8.01 -39.18 -0.31 -7.55 16 22 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.05 0.58 7.65 -51.93 -0.40 0.18 16 24 H 0.05 0.58 7.64 -51.93 -0.40 0.18 16 25 H 0.12 2.93 8.06 -52.48 -0.42 2.50 16 26 H 0.29 6.40 8.29 -40.82 -0.34 6.06 16 27 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.62 7.65 -51.93 -0.40 0.22 16 29 H 0.05 0.62 7.65 -51.93 -0.40 0.22 16 30 H 0.12 1.97 4.46 -52.49 -0.23 1.73 16 LS Contribution 277.52 15.07 4.18 4.18 Total: -1.00 -30.55 277.52 -6.48 -37.03 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -2.64 Total: 1.43 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -0.66 Total: -4.51 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: 0.57 Total: -31.95 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.41 Total: -12.60 kcal Atomic # 14 Polarization: 16.63 SS G_CDS: -5.03 Total: 11.60 kcal Atomic # 16 Polarization: -2.69 SS G_CDS: -2.51 Total: -5.19 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.55 -6.48 -37.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380632696.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.253 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds