Wall clock time and date at job start Mon Mar 30 2020 06:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35926 * 117.00336 * 2 1 4 4 C 1.37301 * 119.66765 * 179.97438 * 3 2 1 5 5 C 1.41850 * 120.43465 * 179.97438 * 4 3 2 6 6 N 1.32898 * 128.59530 * 179.97438 * 5 4 3 7 7 C 1.30538 * 117.96957 * 179.13054 * 6 5 4 8 8 C 1.40131 * 124.92477 * 180.23011 * 7 6 5 9 9 H 1.08005 * 119.99382 * 180.68909 * 8 7 6 10 10 C 1.40343 * 120.00103 * 0.69124 * 8 7 6 11 11 N 1.30593 * 120.00023 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99746 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47108 * 59.99877 * 12 10 8 14 14 H 1.48502 * 109.46779 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47351 * 299.99980 * 12 10 8 16 16 S 1.75841 * 110.13849 * 0.83184 * 7 6 5 17 17 C 1.40641 * 118.30342 * 359.75670 * 5 4 3 18 18 C 1.39823 * 120.37442 * 0.53834 * 17 5 4 19 19 O 1.35950 * 119.90479 * 179.70331 * 18 17 5 20 20 C 1.42905 * 116.99802 * 179.72797 * 19 18 17 21 21 C 1.38002 * 120.18795 * 359.42798 * 18 17 5 22 22 H 1.08999 * 109.47246 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46685 * 299.99957 * 1 2 3 24 24 H 1.08993 * 109.47330 * 59.99658 * 1 2 3 25 25 H 1.08005 * 119.77779 * 359.97438 * 4 3 2 26 26 H 0.97005 * 119.99625 * 180.02562 * 11 10 8 27 27 H 1.09001 * 109.47103 * 180.02562 * 20 19 18 28 28 H 1.09004 * 109.47054 * 299.99740 * 20 19 18 29 29 H 1.09000 * 109.47187 * 59.99795 * 20 19 18 30 30 H 1.08001 * 119.98771 * 180.27314 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 3.4177 1.2749 0.0005 5 6 4.0786 2.5300 0.0000 6 7 5.3840 2.7796 0.0008 7 6 5.7688 4.0268 -0.0174 8 6 7.1032 4.4547 -0.0239 9 1 7.3318 5.5102 -0.0281 10 6 8.1425 3.5115 -0.0250 11 7 7.8660 2.2352 -0.0205 12 14 9.9213 4.0820 -0.0343 13 1 10.1839 4.9039 1.1743 14 1 10.8201 2.8998 -0.0334 15 1 10.1739 4.8956 -1.2507 16 16 4.3699 5.0922 -0.0154 17 6 3.2937 3.6970 -0.0064 18 6 1.8982 3.6104 -0.0006 19 8 1.1487 4.7447 -0.0007 20 6 -0.2713 4.5840 -0.0007 21 6 1.2794 2.3769 -0.0006 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 3.9971 0.3634 0.0014 26 1 8.5844 1.5834 -0.0208 27 1 -0.7479 5.5643 -0.0013 28 1 -0.5745 4.0325 -0.8908 29 1 -0.5746 4.0326 0.8893 30 1 0.2013 2.3138 -0.0006 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380632696.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:00 Heat of formation + Delta-G solvation = -52.717285 kcal Electronic energy + Delta-G solvation = -17285.239565 eV Core-core repulsion = 14364.648053 eV Total energy + Delta-G solvation = -2920.591512 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.36666 -39.70264 -39.29224 -36.43827 -34.78955 -31.10343 -30.91400 -29.08503 -27.94893 -27.31010 -24.41391 -23.19763 -21.93583 -19.80282 -19.33384 -17.81478 -17.62623 -17.14333 -16.87695 -16.54670 -16.37849 -16.33201 -15.57957 -14.88804 -14.82132 -14.48468 -13.91874 -13.40107 -13.21414 -13.14102 -12.85506 -12.69184 -12.44420 -12.43266 -12.15829 -12.00024 -11.63746 -11.43331 -10.75960 -10.20621 -9.73435 -9.36711 -8.68522 -8.38294 -6.90532 0.05970 0.55488 1.05312 1.39839 1.43933 1.45873 1.60149 1.95556 2.15154 2.31945 2.45136 2.77920 3.32371 3.95113 4.13864 4.24808 4.27727 4.38103 4.39593 4.44334 4.52308 4.65679 4.69431 4.74025 4.86045 5.20377 5.31696 5.45217 5.56898 5.89971 6.09129 6.27108 6.41434 6.64282 7.81914 8.09970 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.027717 B = 0.006017 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.985202 B = 4652.659379 C = 5642.177081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.197 3.803 4 C -0.242 4.242 5 C 0.216 3.784 6 N -0.586 5.586 7 C 0.223 3.777 8 C -0.376 4.376 9 H 0.121 0.879 10 C 0.019 3.981 11 N -0.727 5.727 12 Si 1.013 2.987 13 H -0.249 1.249 14 H -0.263 1.263 15 H -0.248 1.248 16 S -0.109 6.109 17 C -0.326 4.326 18 C 0.230 3.770 19 O -0.335 6.335 20 C 0.017 3.983 21 C -0.347 4.347 22 H 0.124 0.876 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.110 0.890 26 H 0.298 0.702 27 H 0.122 0.878 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.498 0.302 -0.022 9.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.149 3.851 4 C -0.266 4.266 5 C 0.083 3.917 6 N -0.308 5.308 7 C -0.025 4.025 8 C -0.416 4.416 9 H 0.138 0.862 10 C -0.209 4.209 11 N -0.347 5.347 12 Si 0.830 3.170 13 H -0.172 1.172 14 H -0.187 1.187 15 H -0.172 1.172 16 S 0.144 5.856 17 C -0.446 4.446 18 C 0.179 3.821 19 O -0.249 6.249 20 C -0.076 4.076 21 C -0.369 4.369 22 H 0.142 0.858 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.129 0.871 26 H 0.110 0.890 27 H 0.140 0.860 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -9.018 0.864 -0.014 9.059 hybrid contribution -0.146 -0.804 0.001 0.817 sum -9.164 0.061 -0.013 9.164 Atomic orbital electron populations 1.23373 0.76290 1.05628 1.02282 1.86034 1.23753 1.26186 1.88604 1.17992 0.90426 0.84268 0.92420 1.19296 0.91827 0.94868 1.20623 1.19301 0.88292 0.92511 0.91643 1.66955 1.11283 1.17872 1.34737 1.24255 0.96435 0.87273 0.94582 1.19967 0.87487 0.97053 1.37085 0.86152 1.27445 1.07075 0.93987 0.92405 1.70052 1.38016 1.03514 1.23147 0.84793 0.71917 0.79307 0.81026 1.17214 1.18686 1.17195 1.83959 1.03066 1.13305 1.85261 1.22824 0.95386 0.96240 1.30175 1.17731 0.87115 0.85844 0.91372 1.86098 1.21213 1.29469 1.88078 1.23396 0.76257 1.05517 1.02479 1.20850 1.00690 0.89658 1.25713 0.85779 0.91720 0.91712 0.87147 0.89048 0.85968 0.91444 0.91433 0.81523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.80 113.37 1.11 1.50 16 2 O -0.33 -11.49 10.48 -92.71 -0.97 -12.46 16 3 C 0.20 8.20 6.65 22.36 0.15 8.35 16 4 C -0.24 -12.19 10.03 22.94 0.23 -11.96 16 5 C 0.22 12.11 6.93 40.46 0.28 12.39 16 6 N -0.59 -35.18 8.59 -186.46 -1.60 -36.78 16 7 C 0.22 12.66 7.03 85.34 0.60 13.26 16 8 C -0.38 -19.23 9.39 23.24 0.22 -19.01 16 9 H 0.12 5.46 7.85 -2.91 -0.02 5.44 16 10 C 0.02 0.92 5.50 85.39 0.47 1.39 16 11 N -0.73 -37.76 11.84 21.89 0.26 -37.50 16 12 Si 1.01 33.80 29.56 68.60 2.03 35.83 16 13 H -0.25 -7.86 7.11 99.48 0.71 -7.16 16 14 H -0.26 -8.33 7.11 99.48 0.71 -7.62 16 15 H -0.25 -7.85 7.11 99.48 0.71 -7.15 16 16 S -0.11 -5.64 23.33 -56.49 -1.32 -6.95 16 17 C -0.33 -17.07 6.49 23.24 0.15 -16.92 16 18 C 0.23 10.06 6.70 22.60 0.15 10.22 16 19 O -0.34 -12.70 10.50 -92.99 -0.98 -13.67 16 20 C 0.02 0.40 9.81 113.37 1.11 1.52 16 21 C -0.35 -12.97 8.01 22.53 0.18 -12.79 16 22 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.06 1.21 7.65 -2.39 -0.02 1.19 16 24 H 0.06 1.21 7.64 -2.39 -0.02 1.19 16 25 H 0.11 5.61 8.06 -2.91 -0.02 5.59 16 26 H 0.30 13.65 8.29 -92.70 -0.77 12.88 16 27 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.07 1.35 7.65 -2.38 -0.02 1.34 16 29 H 0.07 1.36 7.65 -2.39 -0.02 1.34 16 30 H 0.17 4.58 4.46 -2.91 -0.01 4.57 16 Total: -1.00 -71.32 277.52 3.25 -68.06 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 1.18 Total: 15.54 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 4.65 Total: -12.06 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -1.34 Total: -74.28 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -1.95 Total: -26.14 kcal Atomic # 14 Polarization: 33.80 SS G_CDS: 2.03 Total: 35.83 kcal Atomic # 16 Polarization: -5.64 SS G_CDS: -1.32 Total: -6.95 kcal Total: -71.32 3.25 -68.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380632696.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.347 kcal (2) G-P(sol) polarization free energy of solvation -71.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds