Wall clock time and date at job start Mon Mar 30 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47473 * 180.02562 * 11 10 9 13 13 C 1.34056 * 123.75359 * 269.70489 * 12 11 10 14 14 O 1.21603 * 125.61247 * 359.96646 * 13 12 11 15 15 C 1.47936 * 108.78005 * 179.83881 * 13 12 11 16 16 C 1.34946 * 143.10477 * 180.02562 * 15 13 12 17 17 S 1.70118 * 111.46441 * 180.37674 * 16 15 13 18 18 C 1.70119 * 93.22403 * 0.02562 * 17 16 15 19 19 C 1.34942 * 111.46557 * 359.97438 * 18 17 16 20 20 C 1.34065 * 123.75371 * 89.99883 * 12 11 10 21 21 O 1.21605 * 125.60603 * 0.03979 * 20 12 11 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 27 27 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 28 28 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 29 29 H 1.07996 * 124.26620 * 0.39575 * 16 15 13 30 30 H 1.07995 * 124.26760 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0018 13 6 2.9121 -6.6711 -1.1125 14 8 2.6288 -6.3501 -2.2507 15 6 3.8452 -7.7533 -0.7297 16 6 4.6587 -8.7051 -1.2330 17 16 5.4182 -9.5926 0.0038 18 6 4.6583 -8.7040 1.2396 19 6 3.8450 -7.7526 0.7352 20 6 2.9164 -6.6662 1.1168 21 8 2.6373 -6.3402 2.2546 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8902 25 1 2.8720 -3.6043 -0.8894 26 1 2.8720 -3.6043 0.8905 27 1 0.8540 -5.0446 0.8914 28 1 0.8534 -5.0452 -0.8885 29 1 4.8089 -8.8811 -2.2878 30 1 4.8085 -8.8787 2.2947 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381008630.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:17 Heat of formation + Delta-G solvation = -22.152506 kcal Electronic energy + Delta-G solvation = -16966.169712 eV Core-core repulsion = 14046.903588 eV Total energy + Delta-G solvation = -2919.266124 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.09660 -38.43381 -37.27337 -35.79715 -33.85269 -31.79542 -30.07281 -28.30699 -25.38426 -24.59283 -22.86114 -20.69630 -20.44346 -19.46108 -18.05542 -16.98234 -16.56365 -16.44341 -16.15943 -14.98466 -14.67434 -14.40811 -14.01414 -13.85586 -13.47204 -13.41255 -13.11753 -12.45976 -12.12473 -12.03306 -11.50757 -10.98584 -10.82508 -10.69545 -10.38563 -10.34453 -9.81570 -9.77406 -9.60173 -9.33515 -9.09759 -8.88492 -8.33677 -5.98808 -4.01209 0.32333 0.52080 0.97012 1.21782 2.54556 2.67337 3.08156 3.35774 3.39485 3.42567 3.80565 4.15005 4.47342 4.49720 4.92429 5.16182 5.27220 5.36930 5.43625 5.57627 5.58299 5.71394 5.98461 6.42633 6.72876 6.90067 7.00200 7.28925 7.64567 7.77650 7.78442 7.99451 8.41743 9.04240 9.62578 11.12624 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.036437 B = 0.003931 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.272005 B = 7121.758116 C = 7217.247299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.026 3.974 10 C -0.124 4.124 11 C 0.104 3.896 12 N -0.561 5.561 13 C 0.596 3.404 14 O -0.464 6.464 15 C -0.178 4.178 16 C -0.183 4.183 17 S 0.297 5.703 18 C -0.183 4.183 19 C -0.178 4.178 20 C 0.596 3.404 21 O -0.464 6.464 22 H 0.261 0.739 23 H 0.020 0.980 24 H 0.020 0.980 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.182 0.818 30 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.660 -22.718 0.010 25.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.162 4.162 11 C -0.014 4.014 12 N -0.302 5.302 13 C 0.382 3.618 14 O -0.336 6.336 15 C -0.194 4.194 16 C -0.320 4.320 17 S 0.566 5.434 18 C -0.320 4.320 19 C -0.194 4.194 20 C 0.382 3.618 21 O -0.336 6.336 22 H 0.071 0.929 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.199 0.801 30 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 11.161 -23.386 0.011 25.913 hybrid contribution -0.624 2.262 -0.002 2.346 sum 10.538 -21.124 0.009 23.606 Atomic orbital electron populations 1.69946 1.06037 1.26786 1.50659 1.25007 0.94868 0.99252 0.95231 0.86631 0.79575 0.83016 0.78633 1.20227 1.21230 1.20220 1.21149 0.92999 0.90883 1.50893 0.92736 1.19031 0.93764 0.90781 0.97626 1.22021 0.99988 0.92984 1.01249 1.22235 0.90543 0.84053 1.04610 1.46523 1.42953 1.33507 1.07168 1.17605 0.79295 0.80635 0.84241 1.90860 1.58626 1.64220 1.19882 1.21226 1.03239 1.00870 0.94072 1.24839 1.01062 0.99719 1.06404 1.82022 1.40541 1.31221 0.89655 1.24838 1.01028 0.99750 1.06404 1.21221 1.03287 1.00829 0.94071 1.17605 0.79259 0.80676 0.84234 1.90861 1.58635 1.64152 1.19929 0.92889 0.96138 0.96125 0.92631 0.92635 0.88711 0.88695 0.80076 0.80076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.68 4.97 -27.88 -0.14 0.54 16 10 C -0.12 -2.70 5.48 -26.73 -0.15 -2.85 16 11 C 0.10 1.91 5.66 -4.04 -0.02 1.89 16 12 N -0.56 -9.39 2.58 -117.72 -0.30 -9.69 16 13 C 0.60 9.56 7.99 -12.61 -0.10 9.46 16 14 O -0.46 -8.60 17.61 5.27 0.09 -8.51 16 15 C -0.18 -2.20 6.97 -103.77 -0.72 -2.92 16 16 C -0.18 -1.53 10.91 29.56 0.32 -1.20 16 17 S 0.30 1.63 22.76 -107.50 -2.45 -0.82 16 18 C -0.18 -1.52 10.91 29.56 0.32 -1.20 16 19 C -0.18 -2.20 6.97 -103.78 -0.72 -2.92 16 20 C 0.60 9.57 7.99 -12.61 -0.10 9.46 16 21 O -0.46 -8.60 17.61 5.27 0.09 -8.51 16 22 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 23 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.09 1.68 7.91 -51.93 -0.41 1.27 16 28 H 0.09 1.68 7.90 -51.93 -0.41 1.27 16 29 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 287.67 15.07 4.34 4.34 Total: -1.00 -34.24 287.67 -7.13 -41.37 By element: Atomic # 1 Polarization: -2.20 SS G_CDS: -2.90 Total: -5.10 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -1.72 Total: -3.64 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.43 Total: -36.24 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: 0.19 Total: -17.02 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.45 Total: -0.82 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -34.24 -7.13 -41.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381008630.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.217 kcal (2) G-P(sol) polarization free energy of solvation -34.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds