Wall clock time and date at job start Mon Mar 30 2020 06:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47473 * 180.02562 * 11 10 9 13 13 C 1.34056 * 123.75359 * 269.70489 * 12 11 10 14 14 O 1.21603 * 125.61247 * 359.96646 * 13 12 11 15 15 C 1.47936 * 108.78005 * 179.83881 * 13 12 11 16 16 C 1.34946 * 143.10477 * 180.02562 * 15 13 12 17 17 S 1.70118 * 111.46441 * 180.37674 * 16 15 13 18 18 C 1.70119 * 93.22403 * 0.02562 * 17 16 15 19 19 C 1.34942 * 111.46557 * 359.97438 * 18 17 16 20 20 C 1.34065 * 123.75371 * 89.99883 * 12 11 10 21 21 O 1.21605 * 125.60603 * 0.03979 * 20 12 11 22 22 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 27 27 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 28 28 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 29 29 H 1.07996 * 124.26620 * 0.39575 * 16 15 13 30 30 H 1.07995 * 124.26760 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0018 13 6 2.9121 -6.6711 -1.1125 14 8 2.6288 -6.3501 -2.2507 15 6 3.8452 -7.7533 -0.7297 16 6 4.6587 -8.7051 -1.2330 17 16 5.4182 -9.5926 0.0038 18 6 4.6583 -8.7040 1.2396 19 6 3.8450 -7.7526 0.7352 20 6 2.9164 -6.6662 1.1168 21 8 2.6373 -6.3402 2.2546 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8902 25 1 2.8720 -3.6043 -0.8894 26 1 2.8720 -3.6043 0.8905 27 1 0.8540 -5.0446 0.8914 28 1 0.8534 -5.0452 -0.8885 29 1 4.8089 -8.8811 -2.2878 30 1 4.8085 -8.8787 2.2947 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381008630.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:16 Heat of formation + Delta-G solvation = -45.099379 kcal Electronic energy + Delta-G solvation = -16967.164764 eV Core-core repulsion = 14046.903588 eV Total energy + Delta-G solvation = -2920.261175 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.23796 -39.70848 -38.23984 -37.23967 -35.74778 -33.74495 -30.80827 -29.96954 -27.02100 -25.74713 -24.50665 -22.33365 -21.70443 -20.52857 -18.95128 -18.41023 -17.98368 -17.64407 -17.61681 -16.59262 -16.16381 -15.81334 -15.77473 -15.17206 -14.57947 -14.29245 -14.05599 -13.96871 -13.88274 -13.38812 -12.95785 -12.72239 -12.71237 -12.56797 -11.81882 -11.80466 -11.58549 -11.44296 -11.30172 -10.82696 -10.59613 -10.32271 -9.56587 -8.24106 -6.35999 -0.54374 -0.37083 0.37471 0.54072 1.33846 1.37866 1.41233 1.49407 1.68312 1.88510 2.38571 2.88392 3.08862 3.42226 3.47291 3.86936 4.03488 4.16321 4.28961 4.34217 4.50208 4.58956 4.66481 4.79957 4.91446 5.00476 5.40528 5.54393 5.67810 5.75584 6.11839 6.16894 6.55832 6.77805 7.32873 8.87734 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.036437 B = 0.003931 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.272005 B = 7121.758116 C = 7217.247299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.550 4.550 8 H 0.056 0.944 9 C 0.030 3.970 10 C -0.105 4.105 11 C 0.113 3.887 12 N -0.570 5.570 13 C 0.591 3.409 14 O -0.505 6.505 15 C -0.212 4.212 16 C -0.177 4.177 17 S 0.440 5.560 18 C -0.177 4.177 19 C -0.212 4.212 20 C 0.591 3.409 21 O -0.505 6.505 22 H 0.266 0.734 23 H 0.001 0.999 24 H 0.001 0.999 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.205 0.795 30 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.662 -24.999 0.011 28.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.588 4.588 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.144 4.144 11 C -0.007 4.007 12 N -0.311 5.311 13 C 0.381 3.619 14 O -0.380 6.380 15 C -0.228 4.228 16 C -0.315 4.315 17 S 0.709 5.291 18 C -0.315 4.315 19 C -0.228 4.228 20 C 0.381 3.619 21 O -0.380 6.380 22 H 0.075 0.925 23 H 0.019 0.981 24 H 0.019 0.981 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.222 0.778 30 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 14.185 -25.702 0.012 29.357 hybrid contribution -1.431 2.748 -0.002 3.098 sum 12.754 -22.954 0.010 26.259 Atomic orbital electron populations 1.70075 1.07725 1.28066 1.51106 1.25977 0.95853 1.03361 0.94403 0.85466 0.78317 0.77901 0.79163 1.19208 1.20330 1.19198 1.21574 0.93395 0.92336 1.51462 0.92578 1.18897 0.94074 0.92169 0.95639 1.21707 0.98840 0.93391 1.00453 1.21859 0.90635 0.83530 1.04719 1.46527 1.42980 1.33146 1.08409 1.18220 0.79250 0.81132 0.83293 1.90817 1.60327 1.65808 1.21015 1.20865 1.05542 1.02309 0.94114 1.25451 0.98886 0.97984 1.09213 1.81738 1.35647 1.26399 0.85275 1.25450 0.98852 0.98018 1.09209 1.20860 1.05608 1.02244 0.94117 1.18220 0.79203 0.81185 0.83286 1.90818 1.60344 1.65739 1.21062 0.92529 0.98078 0.98068 0.93277 0.93287 0.88627 0.88611 0.77777 0.77777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.07 13.29 21.45 0.28 -57.79 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.97 45.78 29.54 68.60 2.03 47.81 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.55 -33.03 9.11 25.60 0.23 -32.80 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.03 1.67 4.97 29.85 0.15 1.82 16 10 C -0.11 -4.88 5.48 30.59 0.17 -4.72 16 11 C 0.11 4.44 5.66 86.38 0.49 4.93 16 12 N -0.57 -20.22 2.58 -763.67 -1.97 -22.19 16 13 C 0.59 19.74 7.99 86.93 0.69 20.43 16 14 O -0.50 -19.64 17.61 -4.04 -0.07 -19.71 16 15 C -0.21 -5.02 6.97 -19.31 -0.13 -5.15 16 16 C -0.18 -2.29 10.91 67.06 0.73 -1.56 16 17 S 0.44 2.28 22.76 -56.49 -1.29 0.99 16 18 C -0.18 -2.29 10.91 67.06 0.73 -1.56 16 19 C -0.21 -5.02 6.97 -19.32 -0.13 -5.15 16 20 C 0.59 19.74 7.99 86.92 0.69 20.44 16 21 O -0.50 -19.65 17.61 -4.05 -0.07 -19.72 16 22 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 23 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 24 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 25 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.10 3.69 7.91 -2.39 -0.02 3.67 16 28 H 0.10 3.69 7.90 -2.39 -0.02 3.67 16 29 H 0.21 1.61 8.06 -2.91 -0.02 1.59 16 30 H 0.21 1.61 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -79.25 287.67 4.16 -75.09 By element: Atomic # 1 Polarization: -2.92 SS G_CDS: 1.17 Total: -1.75 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 4.08 Total: -2.72 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -1.69 Total: -79.98 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -0.14 Total: -39.43 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -1.29 Total: 0.99 kcal Total: -79.25 4.16 -75.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381008630.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.986 kcal (2) G-P(sol) polarization free energy of solvation -79.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds