Wall clock time and date at job start Mon Mar 30 2020 06:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47054 * 2 1 4 4 H 1.09001 * 109.47002 * 304.99688 * 3 2 1 5 5 C 1.50698 * 109.47184 * 185.00283 * 3 2 1 6 6 H 1.08003 * 120.00057 * 240.00090 * 5 3 2 7 7 C 1.37876 * 120.00356 * 59.99290 * 5 3 2 8 8 N 1.31519 * 119.99989 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00260 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46997 * 90.00238 * 9 7 5 11 11 H 1.48501 * 109.47418 * 210.00367 * 9 7 5 12 12 H 1.48507 * 109.47103 * 330.00231 * 9 7 5 13 13 N 1.46492 * 109.47363 * 64.99814 * 3 2 1 14 14 C 1.34065 * 123.75439 * 59.70200 * 13 3 2 15 15 O 1.21608 * 125.60860 * 359.97438 * 14 13 3 16 16 C 1.47931 * 108.78201 * 179.87924 * 14 13 3 17 17 C 1.34939 * 143.10041 * 180.02562 * 16 14 13 18 18 S 1.70125 * 111.46300 * 180.34849 * 17 16 14 19 19 C 1.70120 * 93.22205 * 0.02562 * 18 17 16 20 20 C 1.34940 * 111.46659 * 359.97438 * 19 18 17 21 21 C 1.34064 * 123.75900 * 240.00351 * 13 3 2 22 22 O 1.21606 * 125.60386 * 359.97438 * 21 13 3 23 23 H 1.09001 * 109.47018 * 300.00144 * 1 2 3 24 24 H 1.08995 * 109.47070 * 60.00530 * 1 2 3 25 25 H 1.09002 * 109.47069 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47394 * 239.99542 * 2 1 3 27 27 H 1.09004 * 109.47644 * 119.99613 * 2 1 3 28 28 H 0.96996 * 119.99885 * 179.97438 * 8 7 5 29 29 H 1.08003 * 124.27202 * 0.38639 * 17 16 14 30 30 H 1.07997 * 124.26391 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3373 -2.1733 9 14 6.0050 0.8801 -1.3812 10 1 6.5538 -0.3519 -0.7598 11 1 6.3836 0.9214 -2.8165 12 1 6.5576 2.0721 -0.6890 13 7 1.6524 2.0976 1.2517 14 6 2.0263 1.6665 2.4648 15 8 2.7222 0.6944 2.6874 16 6 1.4549 2.5692 3.4881 17 6 1.3834 2.7845 4.8182 18 16 0.4356 4.1509 5.1776 19 6 0.1064 4.4723 3.5398 20 6 0.6983 3.5691 2.7306 21 6 0.8797 3.1914 1.3119 22 8 0.4056 3.7768 0.3572 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.8293 -0.0605 -2.9502 29 1 1.8673 2.1677 5.5611 30 1 -0.4992 5.2959 3.1916 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381022295.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:41 Heat of formation + Delta-G solvation = -14.899382 kcal Electronic energy + Delta-G solvation = -18036.669889 eV Core-core repulsion = 15117.718284 eV Total energy + Delta-G solvation = -2918.951605 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.51992 -37.78711 -36.88780 -35.36683 -33.36149 -31.48229 -29.68840 -28.03043 -25.37072 -23.97008 -22.94284 -20.63801 -19.94754 -18.86282 -17.60014 -16.76435 -16.33060 -15.89192 -15.45463 -14.89109 -14.11173 -13.97912 -13.27118 -13.20358 -13.13668 -12.93149 -12.71757 -12.52975 -11.84720 -11.69556 -11.35182 -11.06948 -10.81202 -10.38756 -10.32859 -9.92704 -9.82553 -9.64873 -9.26620 -9.21946 -8.72569 -8.47889 -8.33589 -6.14181 -4.21439 0.68899 1.03451 1.32764 1.56568 3.17422 3.28524 3.30365 3.34483 3.41769 3.75832 4.28177 4.38201 4.54863 5.01165 5.17769 5.30070 5.57207 5.64125 5.99174 6.12388 6.16012 6.33292 6.54447 6.81925 6.83450 7.02679 7.33276 7.60360 7.79639 7.90936 7.95645 8.17161 8.48732 8.80046 9.43770 10.91597 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.026368 B = 0.006605 C = 0.006175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.625599 B = 4238.507708 C = 4533.452186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C 0.266 3.734 4 H 0.069 0.931 5 C -0.523 4.523 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.888 5.888 9 Si 0.905 3.095 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.540 5.540 14 C 0.593 3.407 15 O -0.455 6.455 16 C -0.173 4.173 17 C -0.190 4.190 18 S 0.270 5.730 19 C -0.188 4.188 20 C -0.175 4.175 21 C 0.591 3.409 22 O -0.480 6.480 23 H 0.028 0.972 24 H 0.048 0.952 25 H 0.040 0.960 26 H 0.112 0.888 27 H 0.054 0.946 28 H 0.266 0.734 29 H 0.178 0.822 30 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.820 6.099 13.665 16.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.169 3.831 4 H 0.087 0.913 5 C -0.562 4.562 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.526 5.526 9 Si 0.732 3.268 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.279 5.279 14 C 0.378 3.622 15 O -0.326 6.326 16 C -0.190 4.190 17 C -0.327 4.327 18 S 0.538 5.462 19 C -0.326 4.326 20 C -0.191 4.191 21 C 0.377 3.623 22 O -0.354 6.354 23 H 0.047 0.953 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.130 0.870 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.196 0.804 30 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -7.062 6.441 14.344 17.237 hybrid contribution 1.395 -0.734 -1.504 2.178 sum -5.667 5.708 12.840 15.151 Atomic orbital electron populations 1.21823 0.98874 0.99732 0.99996 1.21993 0.92081 0.98862 1.04519 1.19385 0.96069 0.90039 0.77642 0.91342 1.21161 0.89872 1.39017 1.06109 0.92023 1.24831 0.98939 0.94566 0.95125 1.69850 1.35278 1.37950 1.09476 0.86376 0.84525 0.78682 0.77192 1.20341 1.20982 1.19852 1.46859 1.44407 1.26170 1.10453 1.17480 0.79202 0.83382 0.82105 1.90790 1.33121 1.25348 1.83334 1.21610 1.03816 1.00193 0.93344 1.24721 1.05432 1.03959 0.98585 1.81804 1.42399 1.19383 1.02593 1.24724 1.05384 1.03914 0.98530 1.21502 1.03056 0.98042 0.96524 1.17627 0.77696 0.80099 0.86856 1.90783 1.47884 1.54646 1.42080 0.95258 0.93262 0.94056 0.87010 0.92761 0.92424 0.80436 0.80452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.80 37.16 0.36 -2.71 16 2 C -0.14 -3.34 5.19 -26.73 -0.14 -3.47 16 3 C 0.27 6.90 2.13 -69.08 -0.15 6.75 16 4 H 0.07 1.93 7.51 -51.93 -0.39 1.54 16 5 C -0.52 -14.68 8.06 -34.44 -0.28 -14.96 16 6 H 0.06 1.77 7.68 -52.48 -0.40 1.37 16 7 C 0.07 1.89 5.29 -17.82 -0.09 1.79 16 8 N -0.89 -24.91 11.30 55.43 0.63 -24.28 16 9 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.54 -12.40 1.94 -111.85 -0.22 -12.62 16 14 C 0.59 12.84 7.24 -12.61 -0.09 12.75 16 15 O -0.45 -10.93 15.92 5.27 0.08 -10.84 16 16 C -0.17 -2.92 6.97 -103.78 -0.72 -3.64 16 17 C -0.19 -2.30 10.91 29.56 0.32 -1.98 16 18 S 0.27 2.36 22.76 -107.50 -2.45 -0.09 16 19 C -0.19 -2.25 10.91 29.56 0.32 -1.92 16 20 C -0.17 -2.92 6.97 -103.78 -0.72 -3.64 16 21 C 0.59 12.56 8.00 -12.61 -0.10 12.46 16 22 O -0.48 -11.18 17.36 5.27 0.09 -11.09 16 23 H 0.03 0.58 7.75 -51.93 -0.40 0.18 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.11 2.97 5.95 -51.93 -0.31 2.66 16 27 H 0.05 1.37 6.58 -51.93 -0.34 1.02 16 28 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.18 1.74 8.06 -52.48 -0.42 1.31 16 30 H 0.18 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 277.77 15.07 4.19 4.19 Total: -1.00 -31.59 277.77 -6.66 -38.25 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: -2.67 Total: -1.58 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.29 Total: 1.42 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.41 Total: -36.90 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: 0.18 Total: -21.93 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.45 Total: -0.09 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.59 -6.66 -38.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381022295.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.349 kcal (2) G-P(sol) polarization free energy of solvation -31.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds