Wall clock time and date at job start Mon Mar 30 2020 06:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47054 * 2 1 4 4 H 1.09001 * 109.47002 * 304.99688 * 3 2 1 5 5 C 1.50698 * 109.47184 * 185.00283 * 3 2 1 6 6 H 1.08003 * 120.00057 * 240.00090 * 5 3 2 7 7 C 1.37876 * 120.00356 * 59.99290 * 5 3 2 8 8 N 1.31519 * 119.99989 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00260 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46997 * 90.00238 * 9 7 5 11 11 H 1.48501 * 109.47418 * 210.00367 * 9 7 5 12 12 H 1.48507 * 109.47103 * 330.00231 * 9 7 5 13 13 N 1.46492 * 109.47363 * 64.99814 * 3 2 1 14 14 C 1.34065 * 123.75439 * 59.70200 * 13 3 2 15 15 O 1.21608 * 125.60860 * 359.97438 * 14 13 3 16 16 C 1.47931 * 108.78201 * 179.87924 * 14 13 3 17 17 C 1.34939 * 143.10041 * 180.02562 * 16 14 13 18 18 S 1.70125 * 111.46300 * 180.34849 * 17 16 14 19 19 C 1.70120 * 93.22205 * 0.02562 * 18 17 16 20 20 C 1.34940 * 111.46659 * 359.97438 * 19 18 17 21 21 C 1.34064 * 123.75900 * 240.00351 * 13 3 2 22 22 O 1.21606 * 125.60386 * 359.97438 * 21 13 3 23 23 H 1.09001 * 109.47018 * 300.00144 * 1 2 3 24 24 H 1.08995 * 109.47070 * 60.00530 * 1 2 3 25 25 H 1.09002 * 109.47069 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47394 * 239.99542 * 2 1 3 27 27 H 1.09004 * 109.47644 * 119.99613 * 2 1 3 28 28 H 0.96996 * 119.99885 * 179.97438 * 8 7 5 29 29 H 1.08003 * 124.27202 * 0.38639 * 17 16 14 30 30 H 1.07997 * 124.26391 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3373 -2.1733 9 14 6.0050 0.8801 -1.3812 10 1 6.5538 -0.3519 -0.7598 11 1 6.3836 0.9214 -2.8165 12 1 6.5576 2.0721 -0.6890 13 7 1.6524 2.0976 1.2517 14 6 2.0263 1.6665 2.4648 15 8 2.7222 0.6944 2.6874 16 6 1.4549 2.5692 3.4881 17 6 1.3834 2.7845 4.8182 18 16 0.4356 4.1509 5.1776 19 6 0.1064 4.4723 3.5398 20 6 0.6983 3.5691 2.7306 21 6 0.8797 3.1914 1.3119 22 8 0.4056 3.7768 0.3572 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.8293 -0.0605 -2.9502 29 1 1.8673 2.1677 5.5611 30 1 -0.4992 5.2959 3.1916 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381022295.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:41 Heat of formation + Delta-G solvation = -35.926705 kcal Electronic energy + Delta-G solvation = -18037.581702 eV Core-core repulsion = 15117.718284 eV Total energy + Delta-G solvation = -2919.863418 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.04612 -39.45665 -38.22945 -37.18201 -35.19518 -33.45199 -30.74324 -29.86378 -27.05462 -25.51065 -24.78798 -22.33462 -21.40016 -20.33289 -18.94265 -18.41640 -17.90581 -17.41751 -17.16729 -16.73549 -15.81070 -15.60429 -15.00183 -14.90571 -14.72126 -14.06262 -14.01129 -13.91072 -13.69536 -13.32457 -13.03660 -12.74786 -12.67086 -12.25064 -12.20146 -11.87408 -11.66752 -11.31191 -11.04979 -10.59115 -10.39430 -10.26282 -9.46860 -8.26840 -6.42438 -0.39074 -0.30878 0.44542 0.57919 1.34729 1.37035 1.46372 1.76477 1.80288 2.15467 2.36128 2.98626 3.07037 3.50874 3.65755 4.29775 4.32969 4.33775 4.45620 4.54271 4.65516 4.76566 4.80644 4.88577 5.03592 5.12563 5.39832 5.52670 5.73272 5.90588 6.21518 6.39006 6.56064 6.86702 7.26668 8.78394 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.026368 B = 0.006605 C = 0.006175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.625599 B = 4238.507708 C = 4533.452186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.126 4.126 3 C 0.270 3.730 4 H 0.032 0.968 5 C -0.545 4.545 6 H 0.045 0.955 7 C 0.023 3.977 8 N -0.908 5.908 9 Si 0.966 3.034 10 H -0.272 1.272 11 H -0.270 1.270 12 H -0.273 1.273 13 N -0.557 5.557 14 C 0.585 3.415 15 O -0.500 6.500 16 C -0.213 4.213 17 C -0.182 4.182 18 S 0.438 5.562 19 C -0.179 4.179 20 C -0.213 4.213 21 C 0.582 3.418 22 O -0.521 6.521 23 H 0.034 0.966 24 H 0.044 0.956 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.041 0.959 28 H 0.270 0.730 29 H 0.204 0.796 30 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.623 7.706 17.172 20.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.165 4.165 3 C 0.171 3.829 4 H 0.050 0.950 5 C -0.583 4.583 6 H 0.063 0.937 7 C -0.177 4.177 8 N -0.546 5.546 9 Si 0.790 3.210 10 H -0.198 1.198 11 H -0.195 1.195 12 H -0.198 1.198 13 N -0.295 5.295 14 C 0.374 3.626 15 O -0.374 6.374 16 C -0.229 4.229 17 C -0.320 4.320 18 S 0.707 5.293 19 C -0.317 4.317 20 C -0.229 4.229 21 C 0.372 3.628 22 O -0.398 6.398 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.221 0.779 30 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -7.886 8.065 17.876 21.137 hybrid contribution 1.544 -1.090 -2.362 3.025 sum -6.342 6.975 15.514 18.154 Atomic orbital electron populations 1.21687 0.96103 1.01425 0.99980 1.21777 0.94522 0.97639 1.02541 1.18953 0.94881 0.90480 0.78588 0.94975 1.21328 0.91135 1.39699 1.06181 0.93706 1.25634 1.03418 0.94015 0.94657 1.69951 1.36938 1.37968 1.09740 0.85437 0.79135 0.78630 0.77753 1.19793 1.19520 1.19813 1.46807 1.45387 1.27124 1.10223 1.18195 0.78259 0.83338 0.82825 1.90731 1.35290 1.27422 1.84000 1.21092 1.06919 1.00365 0.94489 1.25388 1.04194 1.05349 0.97086 1.81448 1.36751 1.13879 0.97266 1.25403 1.02907 1.02625 1.00755 1.20995 1.07419 1.01150 0.93337 1.18347 0.76383 0.79048 0.89026 1.90728 1.49456 1.55609 1.44007 0.94735 0.93729 0.91387 0.89371 0.94047 0.92019 0.77941 0.77749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.85 9.80 71.98 0.71 -5.15 16 2 C -0.13 -6.59 5.19 30.60 0.16 -6.43 16 3 C 0.27 15.09 2.13 44.25 0.09 15.18 16 4 H 0.03 1.99 7.51 -2.39 -0.02 1.97 16 5 C -0.55 -32.56 8.06 25.60 0.21 -32.36 16 6 H 0.04 2.74 7.68 -2.91 -0.02 2.72 16 7 C 0.02 1.35 5.29 84.65 0.45 1.80 16 8 N -0.91 -53.16 11.30 21.45 0.24 -52.92 16 9 Si 0.97 45.74 29.54 68.60 2.03 47.77 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 13 N -0.56 -27.30 1.94 -745.08 -1.44 -28.74 16 14 C 0.58 26.56 7.24 86.92 0.63 27.19 16 15 O -0.50 -25.42 15.92 -4.06 -0.06 -25.48 16 16 C -0.21 -6.99 6.97 -19.32 -0.13 -7.12 16 17 C -0.18 -3.66 10.91 67.06 0.73 -2.93 16 18 S 0.44 4.73 22.76 -56.49 -1.29 3.44 16 19 C -0.18 -3.51 10.91 67.06 0.73 -2.78 16 20 C -0.21 -6.92 6.97 -19.32 -0.13 -7.05 16 21 C 0.58 26.03 8.00 86.92 0.70 26.72 16 22 O -0.52 -25.81 17.36 -4.05 -0.07 -25.88 16 23 H 0.03 1.43 7.75 -2.39 -0.02 1.41 16 24 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.09 4.99 5.95 -2.39 -0.01 4.97 16 27 H 0.04 2.22 6.58 -2.39 -0.02 2.20 16 28 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 29 H 0.20 2.98 8.06 -2.91 -0.02 2.95 16 30 H 0.21 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -77.33 277.77 4.71 -72.62 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: 1.18 Total: 2.11 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 4.13 Total: 7.08 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -1.20 Total: -81.66 kcal Atomic # 8 Polarization: -51.23 SS G_CDS: -0.13 Total: -51.36 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Atomic # 16 Polarization: 4.73 SS G_CDS: -1.29 Total: 3.44 kcal Total: -77.33 4.71 -72.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381022295.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.691 kcal (2) G-P(sol) polarization free energy of solvation -77.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds