Wall clock time and date at job start Mon Mar 30 2020 06:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47551 * 2 1 4 4 H 1.09003 * 109.46821 * 54.67007 * 3 2 1 5 5 C 1.50695 * 109.47513 * 174.66846 * 3 2 1 6 6 H 1.08006 * 119.99543 * 28.87747 * 5 3 2 7 7 C 1.37872 * 120.00362 * 208.88323 * 5 3 2 8 8 N 1.31523 * 119.99672 * 353.78622 * 7 5 3 9 9 Si 1.86797 * 120.00282 * 173.79413 * 7 5 3 10 10 H 1.48495 * 109.47019 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47659 * 119.99509 * 9 7 5 12 12 H 1.48510 * 109.47009 * 239.99610 * 9 7 5 13 13 N 1.46493 * 109.47049 * 294.67193 * 3 2 1 14 14 C 1.34058 * 123.75646 * 299.69816 * 13 3 2 15 15 O 1.21603 * 125.60817 * 0.03861 * 14 13 3 16 16 C 1.47934 * 108.78554 * 179.90661 * 14 13 3 17 17 C 1.34942 * 143.10549 * 180.02562 * 16 14 13 18 18 S 1.70125 * 111.46467 * 180.34743 * 17 16 14 19 19 C 1.70115 * 93.22121 * 359.97438 * 18 17 16 20 20 C 1.34942 * 111.46866 * 0.02562 * 19 18 17 21 21 C 1.34069 * 123.75210 * 119.99812 * 13 3 2 22 22 O 1.21603 * 125.60938 * 359.97438 * 21 13 3 23 23 H 1.09002 * 109.46878 * 59.99712 * 1 2 3 24 24 H 1.08997 * 109.47435 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47132 * 299.99786 * 1 2 3 26 26 H 1.09002 * 109.47132 * 240.00214 * 2 1 3 27 27 H 1.09002 * 109.46913 * 120.00844 * 2 1 3 28 28 H 0.96996 * 119.99807 * 3.29718 * 8 7 5 29 29 H 1.07992 * 124.26785 * 0.37742 * 17 16 14 30 30 H 1.08002 * 124.26574 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6009 1.9831 0.8384 5 6 3.5412 1.4445 0.1320 6 1 4.1176 0.6125 -0.2451 7 6 4.1789 2.5082 0.7342 8 7 3.4925 3.5744 1.0832 9 14 6.0178 2.4353 1.0544 10 1 6.5530 1.1368 0.5721 11 1 6.6902 3.5463 0.3343 12 1 6.2721 2.5644 2.5118 13 7 1.6594 2.0950 -1.2551 14 6 2.0492 1.6683 -2.4647 15 8 2.7557 0.7025 -2.6809 16 6 1.4759 2.5637 -3.4933 17 6 1.4129 2.7775 -4.8242 18 16 0.4680 4.1437 -5.1912 19 6 0.1284 4.4672 -3.5560 20 6 0.7148 3.5648 -2.7419 21 6 0.8870 3.1889 -1.3215 22 8 0.4072 3.7756 -0.3706 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5140 0.8899 28 1 2.5305 3.5934 0.9607 29 1 1.9005 2.1591 -5.5631 30 1 -0.4799 5.2910 -3.2126 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381022296.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:43 Heat of formation + Delta-G solvation = -24.126462 kcal Electronic energy + Delta-G solvation = -18255.257529 eV Core-core repulsion = 15335.905808 eV Total energy + Delta-G solvation = -2919.351721 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.36339 -37.63078 -36.83077 -35.33817 -33.18854 -32.12790 -29.57274 -27.71426 -25.17176 -23.79889 -23.02708 -20.80599 -19.82909 -18.86002 -17.76083 -16.99835 -16.17012 -15.81700 -15.54490 -14.38191 -13.97209 -13.85263 -13.35171 -13.28573 -13.12194 -13.03238 -12.75417 -12.63698 -12.43567 -11.60402 -11.29649 -10.98486 -10.83026 -10.48453 -10.20946 -10.11989 -9.71821 -9.46502 -9.13645 -9.11399 -8.65969 -8.56676 -8.13125 -6.59018 -4.37911 0.80018 1.17331 1.43703 1.67260 3.30123 3.32033 3.37896 3.53157 3.56863 3.93610 4.37299 4.44187 4.67329 5.09771 5.27109 5.42598 5.69414 5.73914 5.77434 5.79833 5.97066 6.12153 6.48103 6.50240 6.56131 6.63429 7.02706 7.17277 7.64812 7.98970 8.10104 8.34942 8.64540 8.68859 9.38792 10.79709 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.020588 B = 0.007795 C = 0.007170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.699578 B = 3591.114525 C = 3904.358315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.228 3.772 4 H 0.073 0.927 5 C -0.593 4.593 6 H 0.067 0.933 7 C 0.027 3.973 8 N -0.886 5.886 9 Si 1.076 2.924 10 H -0.284 1.284 11 H -0.286 1.286 12 H -0.283 1.283 13 N -0.538 5.538 14 C 0.597 3.403 15 O -0.470 6.470 16 C -0.174 4.174 17 C -0.192 4.192 18 S 0.262 5.738 19 C -0.191 4.191 20 C -0.174 4.174 21 C 0.584 3.416 22 O -0.482 6.482 23 H 0.040 0.960 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.283 0.717 29 H 0.177 0.823 30 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.770 0.342 -11.479 13.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C 0.134 3.866 4 H 0.091 0.909 5 C -0.631 4.631 6 H 0.085 0.915 7 C -0.182 4.182 8 N -0.520 5.520 9 Si 0.903 3.097 10 H -0.210 1.210 11 H -0.212 1.212 12 H -0.209 1.209 13 N -0.278 5.278 14 C 0.383 3.617 15 O -0.343 6.343 16 C -0.191 4.191 17 C -0.329 4.329 18 S 0.530 5.470 19 C -0.328 4.328 20 C -0.190 4.190 21 C 0.371 3.629 22 O -0.356 6.356 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.194 0.806 30 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -5.783 1.651 -11.728 13.180 hybrid contribution -0.863 -1.375 0.672 1.757 sum -6.646 0.276 -11.055 12.902 Atomic orbital electron populations 1.21829 0.97647 1.00290 1.01005 1.21804 0.93556 0.98131 1.02693 1.19571 0.96694 0.89565 0.80734 0.90909 1.22244 0.90542 1.08741 1.41619 0.91508 1.26158 1.07473 0.91751 0.92866 1.70695 1.10693 1.27441 1.43121 0.83447 0.73499 0.75837 0.76886 1.20987 1.21186 1.20871 1.48533 1.43184 1.25922 1.10198 1.17561 0.78915 0.82997 0.82231 1.90717 1.33399 1.26323 1.83816 1.21743 1.03533 1.00404 0.93379 1.24684 1.05706 1.03953 0.98568 1.81720 1.42721 1.19597 1.02985 1.24702 1.05772 1.03930 0.98418 1.21697 1.02551 0.97769 0.97018 1.17918 0.77695 0.80662 0.86668 1.90763 1.47902 1.54593 1.42308 0.94119 0.93508 0.93049 0.91534 0.90956 0.90479 0.80597 0.80611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.80 37.16 0.36 -2.44 16 2 C -0.12 -2.69 5.34 -26.73 -0.14 -2.83 16 3 C 0.23 5.79 1.79 -69.09 -0.12 5.66 16 4 H 0.07 2.00 6.15 -51.93 -0.32 1.68 16 5 C -0.59 -16.47 7.76 -34.44 -0.27 -16.74 16 6 H 0.07 1.90 7.82 -52.48 -0.41 1.49 16 7 C 0.03 0.77 5.45 -17.82 -0.10 0.67 16 8 N -0.89 -26.64 13.62 55.43 0.76 -25.89 16 9 Si 1.08 25.13 29.91 -169.99 -5.08 20.05 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.54 -12.89 1.95 -111.85 -0.22 -13.11 16 14 C 0.60 13.63 7.33 -12.61 -0.09 13.54 16 15 O -0.47 -11.53 15.93 5.27 0.08 -11.45 16 16 C -0.17 -3.23 6.97 -103.77 -0.72 -3.95 16 17 C -0.19 -2.62 10.91 29.56 0.32 -2.30 16 18 S 0.26 2.70 22.76 -107.50 -2.45 0.26 16 19 C -0.19 -2.66 10.91 29.56 0.32 -2.33 16 20 C -0.17 -3.25 6.97 -103.77 -0.72 -3.98 16 21 C 0.58 13.50 7.84 -12.60 -0.10 13.40 16 22 O -0.48 -12.12 16.53 5.28 0.09 -12.03 16 23 H 0.04 0.77 7.76 -51.93 -0.40 0.36 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.07 1.50 6.61 -51.93 -0.34 1.15 16 27 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.28 8.61 5.70 -40.82 -0.23 8.38 16 29 H 0.18 1.96 8.06 -52.49 -0.42 1.53 16 30 H 0.18 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 277.67 15.07 4.18 4.18 Total: -1.00 -32.79 277.67 -6.51 -39.30 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -2.62 Total: -0.01 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -1.26 Total: -1.30 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.54 Total: -39.00 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: 0.17 Total: -23.48 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.08 Total: 20.05 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -2.45 Total: 0.26 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.79 -6.51 -39.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381022296.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.176 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds