Wall clock time and date at job start Mon Mar 30 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47551 * 2 1 4 4 H 1.09003 * 109.46821 * 54.67007 * 3 2 1 5 5 C 1.50695 * 109.47513 * 174.66846 * 3 2 1 6 6 H 1.08006 * 119.99543 * 28.87747 * 5 3 2 7 7 C 1.37872 * 120.00362 * 208.88323 * 5 3 2 8 8 N 1.31523 * 119.99672 * 353.78622 * 7 5 3 9 9 Si 1.86797 * 120.00282 * 173.79413 * 7 5 3 10 10 H 1.48495 * 109.47019 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47659 * 119.99509 * 9 7 5 12 12 H 1.48510 * 109.47009 * 239.99610 * 9 7 5 13 13 N 1.46493 * 109.47049 * 294.67193 * 3 2 1 14 14 C 1.34058 * 123.75646 * 299.69816 * 13 3 2 15 15 O 1.21603 * 125.60817 * 0.03861 * 14 13 3 16 16 C 1.47934 * 108.78554 * 179.90661 * 14 13 3 17 17 C 1.34942 * 143.10549 * 180.02562 * 16 14 13 18 18 S 1.70125 * 111.46467 * 180.34743 * 17 16 14 19 19 C 1.70115 * 93.22121 * 359.97438 * 18 17 16 20 20 C 1.34942 * 111.46866 * 0.02562 * 19 18 17 21 21 C 1.34069 * 123.75210 * 119.99812 * 13 3 2 22 22 O 1.21603 * 125.60938 * 359.97438 * 21 13 3 23 23 H 1.09002 * 109.46878 * 59.99712 * 1 2 3 24 24 H 1.08997 * 109.47435 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47132 * 299.99786 * 1 2 3 26 26 H 1.09002 * 109.47132 * 240.00214 * 2 1 3 27 27 H 1.09002 * 109.46913 * 120.00844 * 2 1 3 28 28 H 0.96996 * 119.99807 * 3.29718 * 8 7 5 29 29 H 1.07992 * 124.26785 * 0.37742 * 17 16 14 30 30 H 1.08002 * 124.26574 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6009 1.9831 0.8384 5 6 3.5412 1.4445 0.1320 6 1 4.1176 0.6125 -0.2451 7 6 4.1789 2.5082 0.7342 8 7 3.4925 3.5744 1.0832 9 14 6.0178 2.4353 1.0544 10 1 6.5530 1.1368 0.5721 11 1 6.6902 3.5463 0.3343 12 1 6.2721 2.5644 2.5118 13 7 1.6594 2.0950 -1.2551 14 6 2.0492 1.6683 -2.4647 15 8 2.7557 0.7025 -2.6809 16 6 1.4759 2.5637 -3.4933 17 6 1.4129 2.7775 -4.8242 18 16 0.4680 4.1437 -5.1912 19 6 0.1284 4.4672 -3.5560 20 6 0.7148 3.5648 -2.7419 21 6 0.8870 3.1889 -1.3215 22 8 0.4072 3.7756 -0.3706 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5140 0.8899 28 1 2.5305 3.5934 0.9607 29 1 1.9005 2.1591 -5.5631 30 1 -0.4799 5.2910 -3.2126 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381022296.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:42 Heat of formation + Delta-G solvation = -46.250119 kcal Electronic energy + Delta-G solvation = -18256.216883 eV Core-core repulsion = 15335.905808 eV Total energy + Delta-G solvation = -2920.311075 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.00542 -39.41491 -38.29294 -37.19880 -35.04615 -33.99776 -30.76830 -29.49373 -26.90906 -25.45903 -24.89396 -22.50454 -21.35775 -20.44583 -19.44472 -18.40443 -17.83151 -17.45063 -17.26949 -16.08956 -15.76791 -15.59073 -15.32516 -14.97559 -14.90346 -14.55027 -14.05583 -13.98405 -13.84780 -13.12530 -12.79087 -12.73549 -12.65565 -12.17407 -12.03687 -11.96051 -11.53092 -11.21401 -11.05658 -10.74119 -10.29805 -10.22347 -9.47795 -8.82213 -6.61701 -0.38388 -0.33883 0.41903 0.54679 1.45474 1.48658 1.73509 1.80231 1.81258 2.22064 2.45020 3.04182 3.09516 3.49125 3.67763 4.04616 4.12201 4.26874 4.28925 4.50401 4.57508 4.63798 4.77349 4.86105 4.90182 4.91706 5.25519 5.31706 5.65361 5.95511 6.22085 6.35885 6.45302 6.92159 7.23422 8.55849 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.020588 B = 0.007795 C = 0.007170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.699578 B = 3591.114525 C = 3904.358315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.118 4.118 3 C 0.230 3.770 4 H 0.041 0.959 5 C -0.606 4.606 6 H 0.052 0.948 7 C -0.020 4.020 8 N -0.917 5.917 9 Si 1.121 2.879 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.269 1.269 13 N -0.552 5.552 14 C 0.588 3.412 15 O -0.506 6.506 16 C -0.216 4.216 17 C -0.183 4.183 18 S 0.434 5.566 19 C -0.186 4.186 20 C -0.218 4.218 21 C 0.574 3.426 22 O -0.523 6.523 23 H 0.032 0.968 24 H 0.080 0.920 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.268 0.732 29 H 0.205 0.795 30 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.543 1.233 -15.090 16.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.156 4.156 3 C 0.133 3.867 4 H 0.059 0.941 5 C -0.644 4.644 6 H 0.071 0.929 7 C -0.223 4.223 8 N -0.553 5.553 9 Si 0.941 3.059 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.194 1.194 13 N -0.291 5.291 14 C 0.377 3.623 15 O -0.381 6.381 16 C -0.232 4.232 17 C -0.321 4.321 18 S 0.703 5.297 19 C -0.324 4.324 20 C -0.234 4.234 21 C 0.363 3.637 22 O -0.400 6.400 23 H 0.052 0.948 24 H 0.099 0.901 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.222 0.778 30 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -6.579 2.537 -15.373 16.913 hybrid contribution -0.784 -1.576 1.506 2.317 sum -7.363 0.960 -13.867 15.730 Atomic orbital electron populations 1.21721 0.95067 1.02309 1.00534 1.21720 0.95852 0.95758 1.02282 1.19329 0.95512 0.91067 0.80764 0.94139 1.22387 0.91921 1.08277 1.41822 0.92918 1.27554 1.11289 0.91198 0.92234 1.70808 1.09960 1.28665 1.45836 0.82907 0.68841 0.76483 0.77643 1.19604 1.20591 1.19373 1.47955 1.44067 1.26736 1.10356 1.18148 0.78172 0.83064 0.82955 1.90666 1.35125 1.27970 1.84384 1.21251 1.06669 1.00674 0.94612 1.25376 1.04361 1.05301 0.97073 1.81324 1.37017 1.14103 0.97298 1.25381 1.03440 1.02663 1.00928 1.21233 1.07061 1.01062 0.94083 1.18529 0.76638 0.79735 0.88786 1.90709 1.49563 1.55532 1.44244 0.94832 0.90099 0.93259 0.92494 0.90619 0.92107 0.77787 0.78197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.32 9.80 71.98 0.71 -4.61 16 2 C -0.12 -5.39 5.34 30.59 0.16 -5.23 16 3 C 0.23 12.44 1.79 44.24 0.08 12.52 16 4 H 0.04 2.42 6.15 -2.39 -0.01 2.41 16 5 C -0.61 -35.59 7.76 25.60 0.20 -35.39 16 6 H 0.05 3.17 7.82 -2.91 -0.02 3.14 16 7 C -0.02 -1.20 5.45 84.65 0.46 -0.74 16 8 N -0.92 -58.12 13.62 21.45 0.29 -57.83 16 9 Si 1.12 52.01 29.91 68.60 2.05 54.06 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 13 N -0.55 -28.00 1.95 -745.08 -1.45 -29.46 16 14 C 0.59 27.85 7.33 86.92 0.64 28.49 16 15 O -0.51 -25.91 15.93 -4.04 -0.06 -25.97 16 16 C -0.22 -7.81 6.97 -19.31 -0.13 -7.95 16 17 C -0.18 -4.22 10.91 67.06 0.73 -3.49 16 18 S 0.43 6.11 22.76 -56.49 -1.29 4.82 16 19 C -0.19 -4.46 10.91 67.06 0.73 -3.73 16 20 C -0.22 -8.05 6.97 -19.31 -0.13 -8.18 16 21 C 0.57 27.90 7.84 86.92 0.68 28.58 16 22 O -0.52 -28.13 16.53 -4.04 -0.07 -28.19 16 23 H 0.03 1.30 7.76 -2.39 -0.02 1.28 16 24 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 25 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.06 2.69 6.61 -2.39 -0.02 2.68 16 27 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 28 H 0.27 17.48 5.70 -92.71 -0.53 16.95 16 29 H 0.21 3.47 8.06 -2.91 -0.02 3.45 16 30 H 0.20 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -80.18 277.67 5.01 -75.17 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 1.42 Total: 7.13 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 4.12 Total: 0.26 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -1.16 Total: -87.28 kcal Atomic # 8 Polarization: -54.04 SS G_CDS: -0.13 Total: -54.17 kcal Atomic # 14 Polarization: 52.01 SS G_CDS: 2.05 Total: 54.06 kcal Atomic # 16 Polarization: 6.11 SS G_CDS: -1.29 Total: 4.82 kcal Total: -80.18 5.01 -75.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381022296.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.921 kcal (2) G-P(sol) polarization free energy of solvation -80.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds