Wall clock time and date at job start Mon Mar 30 2020 06:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32771 * 124.71328 * 2 1 4 4 C 1.44421 * 113.08816 * 179.87627 * 3 2 1 5 5 C 1.47185 * 123.46589 * 180.20314 * 4 3 2 6 6 O 1.21640 * 119.99809 * 330.57315 * 5 4 3 7 7 N 1.34778 * 120.00115 * 150.57097 * 5 4 3 8 8 C 1.46494 * 119.99993 * 7.51766 * 7 5 4 9 9 C 1.50701 * 109.47206 * 96.08358 * 8 7 5 10 10 H 1.07997 * 120.00283 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99921 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00200 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00064 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47468 * 89.99895 * 13 11 9 15 15 H 1.48498 * 109.47290 * 210.00333 * 13 11 9 16 16 H 1.48508 * 109.47285 * 330.00127 * 13 11 9 17 17 C 1.46504 * 120.00018 * 187.51214 * 7 5 4 18 18 C 1.52997 * 117.49713 * 17.62096 * 17 7 5 19 19 C 1.52993 * 117.49729 * 308.96288 * 17 7 5 20 20 C 1.36019 * 113.07444 * 0.40068 * 4 3 2 21 21 S 1.70444 * 110.81457 * 359.78503 * 20 4 3 22 22 H 1.08994 * 109.46897 * 179.72649 * 1 2 3 23 23 H 1.09003 * 109.46738 * 59.72922 * 1 2 3 24 24 H 1.08995 * 109.46875 * 299.72686 * 1 2 3 25 25 H 1.08006 * 123.45611 * 0.03106 * 3 2 1 26 26 H 1.08997 * 109.47188 * 216.08517 * 8 7 5 27 27 H 1.09000 * 109.47031 * 336.08298 * 8 7 5 28 28 H 0.96993 * 120.00181 * 180.02562 * 12 11 9 29 29 H 1.08999 * 115.54573 * 163.28746 * 17 7 5 30 30 H 1.09002 * 117.50065 * 359.97438 * 18 17 7 31 31 H 1.09000 * 117.50136 * 145.01660 * 18 17 7 32 32 H 1.09005 * 117.49722 * 214.97612 * 19 17 7 33 33 H 1.08998 * 117.50725 * 359.97187 * 19 17 7 34 34 H 1.07995 * 124.59088 * 179.78377 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8004 0.0029 5 6 4.7201 1.8395 0.0078 6 8 4.5044 2.9198 -0.5079 7 7 5.9137 1.5940 0.5837 8 6 6.2348 0.2455 1.0576 9 6 7.0254 -0.4831 0.0016 10 1 7.2651 0.0092 -0.9293 11 6 7.4427 -1.7783 0.2239 12 7 8.1330 -2.4140 -0.6974 13 14 7.0275 -2.6302 1.8337 14 1 5.7276 -3.3355 1.6997 15 1 8.0918 -3.6120 2.1631 16 1 6.9330 -1.6201 2.9183 17 6 6.8900 2.6757 0.7357 18 6 6.3771 4.1121 0.6160 19 6 7.2239 3.5054 -0.5055 20 6 3.9477 -0.5327 -0.0038 21 16 2.5065 -1.4426 -0.0075 22 1 -0.3633 -1.0276 -0.0049 23 1 -0.3633 0.5181 -0.8876 24 1 -0.3633 0.5096 0.8924 25 1 1.8615 2.0940 0.0005 26 1 6.8248 0.3125 1.9716 27 1 5.3118 -0.2978 1.2600 28 1 8.4263 -3.3253 -0.5412 29 1 7.6948 2.4861 1.4460 30 1 5.3134 4.2524 0.4237 31 1 6.8448 4.8678 1.2472 32 1 8.2484 3.8622 -0.6118 33 1 6.7176 3.2464 -1.4354 34 1 4.9408 -0.9571 -0.0063 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381141534.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:49 Heat of formation + Delta-G solvation = 48.106795 kcal Electronic energy + Delta-G solvation = -18115.721504 eV Core-core repulsion = 15335.335147 eV Total energy + Delta-G solvation = -2780.386358 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.89218 -37.11695 -35.61179 -34.47374 -32.42629 -31.39549 -28.10671 -26.42404 -24.43103 -22.43559 -21.92913 -21.77752 -19.57938 -18.29300 -17.12650 -16.76188 -16.16429 -15.18335 -14.84624 -14.53813 -14.16513 -13.70085 -13.61965 -13.20982 -12.91858 -12.75464 -12.30400 -12.15873 -11.93242 -11.78124 -11.43851 -11.06301 -10.87893 -10.70807 -10.55453 -10.48621 -10.11167 -9.80363 -9.64604 -8.93272 -8.86964 -8.32558 -8.00126 -7.55917 -6.35928 -4.38826 1.30297 1.92565 2.34221 2.45349 3.06119 3.16334 3.18070 3.65167 3.81757 4.12481 4.53818 4.91380 4.99749 5.25925 5.37357 5.48349 5.57258 5.62531 5.63685 5.73310 5.84499 6.09158 6.16679 6.20681 6.28054 6.37450 6.51766 6.62195 6.66947 6.71814 6.86748 7.25748 7.43395 8.02176 8.31795 8.73758 8.87288 9.20665 10.75706 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.013071 B = 0.010557 C = 0.006366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.562363 B = 2651.606573 C = 4397.000866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.220 4.220 3 C -0.088 4.088 4 C -0.163 4.163 5 C 0.581 3.419 6 O -0.557 6.557 7 N -0.556 5.556 8 C 0.187 3.813 9 C -0.544 4.544 10 H 0.084 0.916 11 C 0.079 3.921 12 N -0.880 5.880 13 Si 0.856 3.144 14 H -0.267 1.267 15 H -0.278 1.278 16 H -0.260 1.260 17 C 0.090 3.910 18 C -0.200 4.200 19 C -0.183 4.183 20 C -0.197 4.197 21 S 0.145 5.855 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.144 0.856 26 H 0.033 0.967 27 H 0.053 0.947 28 H 0.270 0.730 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.218 3.336 4.447 11.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.337 4.337 3 C -0.118 4.118 4 C -0.180 4.180 5 C 0.370 3.630 6 O -0.439 6.439 7 N -0.283 5.283 8 C 0.065 3.935 9 C -0.582 4.582 10 H 0.102 0.898 11 C -0.127 4.127 12 N -0.516 5.516 13 Si 0.682 3.318 14 H -0.192 1.192 15 H -0.203 1.203 16 H -0.184 1.184 17 C -0.015 4.015 18 C -0.238 4.238 19 C -0.222 4.222 20 C -0.333 4.333 21 S 0.410 5.590 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.162 0.838 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -10.521 2.134 4.150 11.510 hybrid contribution 0.616 0.791 0.706 1.226 sum -9.905 2.925 4.856 11.413 Atomic orbital electron populations 1.20234 0.88048 1.02422 1.02555 1.24234 0.99939 0.96379 1.13111 1.20897 0.90628 0.99096 1.01160 1.20163 0.93729 0.92917 1.11142 1.17594 0.81445 0.86169 0.77839 1.90572 1.81605 1.25362 1.46409 1.47144 1.13225 1.10381 1.57566 1.20513 0.97571 0.79216 0.96150 1.21403 1.34790 0.98486 1.03523 0.89839 1.24917 0.94330 0.97049 0.96368 1.69875 1.35690 1.12423 1.33580 0.87134 0.79368 0.80597 0.84744 1.19189 1.20299 1.18381 1.21482 0.94568 0.84520 1.00961 1.23727 1.03520 0.94604 1.01945 1.23137 0.99736 1.04465 0.94838 1.27381 1.06151 0.97706 1.02099 1.82966 0.95230 1.09474 1.71328 0.91723 0.90978 0.91055 0.83807 0.94883 0.92979 0.92020 0.85721 0.85312 0.89937 0.89306 0.88571 0.76470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.35 36.01 0.37 -0.41 16 2 C -0.22 -3.26 6.44 -36.18 -0.23 -3.49 16 3 C -0.09 -1.49 10.08 -39.02 -0.39 -1.89 16 4 C -0.16 -3.27 5.65 -104.63 -0.59 -3.86 16 5 C 0.58 12.64 7.33 -12.63 -0.09 12.55 16 6 O -0.56 -12.59 12.65 5.24 0.07 -12.52 16 7 N -0.56 -11.97 2.83 -168.83 -0.48 -12.45 16 8 C 0.19 4.18 3.78 -5.20 -0.02 4.16 16 9 C -0.54 -14.09 8.23 -34.44 -0.28 -14.37 16 10 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 11 C 0.08 2.06 5.32 -17.82 -0.09 1.96 16 12 N -0.88 -24.80 13.96 55.43 0.77 -24.02 16 13 Si 0.86 18.96 27.28 -169.99 -4.64 14.33 16 14 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 16 H -0.26 -5.49 6.54 56.52 0.37 -5.12 16 17 C 0.09 1.73 6.62 -67.93 -0.45 1.28 16 18 C -0.20 -3.49 9.63 -26.70 -0.26 -3.74 16 19 C -0.18 -3.39 9.86 -26.70 -0.26 -3.65 16 20 C -0.20 -3.90 8.45 29.94 0.25 -3.65 16 21 S 0.14 2.32 22.99 -107.50 -2.47 -0.15 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.14 2.25 8.06 -52.48 -0.42 1.83 16 26 H 0.03 0.73 7.18 -51.93 -0.37 0.35 16 27 H 0.05 1.14 3.58 -51.93 -0.19 0.96 16 28 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.13 2.19 8.14 -51.93 -0.42 1.77 16 30 H 0.13 2.50 5.36 -51.93 -0.28 2.22 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.10 2.01 7.46 -51.93 -0.39 1.62 16 34 H 0.22 4.86 3.55 -52.49 -0.19 4.68 16 LS Contribution 292.59 15.07 4.41 4.41 Total: -1.00 -28.65 292.59 -8.35 -37.00 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -3.96 Total: 8.54 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -2.05 Total: -15.12 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.30 Total: -36.47 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.07 Total: -12.52 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.64 Total: 14.33 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.47 Total: -0.15 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.65 -8.35 -37.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381141534.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.104 kcal (2) G-P(sol) polarization free energy of solvation -28.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds