Wall clock time and date at job start Mon Mar 30 2020 06:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32771 * 124.71328 * 2 1 4 4 C 1.44421 * 113.08816 * 179.87627 * 3 2 1 5 5 C 1.47185 * 123.46589 * 180.20314 * 4 3 2 6 6 O 1.21640 * 119.99809 * 330.57315 * 5 4 3 7 7 N 1.34778 * 120.00115 * 150.57097 * 5 4 3 8 8 C 1.46494 * 119.99993 * 7.51766 * 7 5 4 9 9 C 1.50701 * 109.47206 * 96.08358 * 8 7 5 10 10 H 1.07997 * 120.00283 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99921 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00200 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00064 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47468 * 89.99895 * 13 11 9 15 15 H 1.48498 * 109.47290 * 210.00333 * 13 11 9 16 16 H 1.48508 * 109.47285 * 330.00127 * 13 11 9 17 17 C 1.46504 * 120.00018 * 187.51214 * 7 5 4 18 18 C 1.52997 * 117.49713 * 17.62096 * 17 7 5 19 19 C 1.52993 * 117.49729 * 308.96288 * 17 7 5 20 20 C 1.36019 * 113.07444 * 0.40068 * 4 3 2 21 21 S 1.70444 * 110.81457 * 359.78503 * 20 4 3 22 22 H 1.08994 * 109.46897 * 179.72649 * 1 2 3 23 23 H 1.09003 * 109.46738 * 59.72922 * 1 2 3 24 24 H 1.08995 * 109.46875 * 299.72686 * 1 2 3 25 25 H 1.08006 * 123.45611 * 0.03106 * 3 2 1 26 26 H 1.08997 * 109.47188 * 216.08517 * 8 7 5 27 27 H 1.09000 * 109.47031 * 336.08298 * 8 7 5 28 28 H 0.96993 * 120.00181 * 180.02562 * 12 11 9 29 29 H 1.08999 * 115.54573 * 163.28746 * 17 7 5 30 30 H 1.09002 * 117.50065 * 359.97438 * 18 17 7 31 31 H 1.09000 * 117.50136 * 145.01660 * 18 17 7 32 32 H 1.09005 * 117.49722 * 214.97612 * 19 17 7 33 33 H 1.08998 * 117.50725 * 359.97187 * 19 17 7 34 34 H 1.07995 * 124.59088 * 179.78377 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8004 0.0029 5 6 4.7201 1.8395 0.0078 6 8 4.5044 2.9198 -0.5079 7 7 5.9137 1.5940 0.5837 8 6 6.2348 0.2455 1.0576 9 6 7.0254 -0.4831 0.0016 10 1 7.2651 0.0092 -0.9293 11 6 7.4427 -1.7783 0.2239 12 7 8.1330 -2.4140 -0.6974 13 14 7.0275 -2.6302 1.8337 14 1 5.7276 -3.3355 1.6997 15 1 8.0918 -3.6120 2.1631 16 1 6.9330 -1.6201 2.9183 17 6 6.8900 2.6757 0.7357 18 6 6.3771 4.1121 0.6160 19 6 7.2239 3.5054 -0.5055 20 6 3.9477 -0.5327 -0.0038 21 16 2.5065 -1.4426 -0.0075 22 1 -0.3633 -1.0276 -0.0049 23 1 -0.3633 0.5181 -0.8876 24 1 -0.3633 0.5096 0.8924 25 1 1.8615 2.0940 0.0005 26 1 6.8248 0.3125 1.9716 27 1 5.3118 -0.2978 1.2600 28 1 8.4263 -3.3253 -0.5412 29 1 7.6948 2.4861 1.4460 30 1 5.3134 4.2524 0.4237 31 1 6.8448 4.8678 1.2472 32 1 8.2484 3.8622 -0.6118 33 1 6.7176 3.2464 -1.4354 34 1 4.9408 -0.9571 -0.0063 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381141534.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:49 Heat of formation + Delta-G solvation = 31.668662 kcal Electronic energy + Delta-G solvation = -18116.434315 eV Core-core repulsion = 15335.335147 eV Total energy + Delta-G solvation = -2781.099168 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.50182 -38.49470 -37.27709 -36.08466 -34.33368 -32.64018 -29.97762 -27.61732 -25.99616 -24.30404 -23.36611 -23.23963 -20.92429 -19.84866 -19.13897 -18.21009 -17.76062 -16.72732 -16.38821 -16.25755 -15.79758 -14.98374 -14.91844 -14.65565 -14.55959 -14.23874 -13.99043 -13.32374 -13.26327 -13.18105 -12.97041 -12.69261 -12.52559 -12.27343 -12.07167 -11.81581 -11.81244 -11.63351 -11.24442 -10.88935 -10.50994 -9.63925 -9.41470 -9.17688 -8.38775 -6.47551 -0.12719 0.63169 0.96963 1.05709 1.32835 1.35858 1.45320 2.08803 2.21755 2.25688 2.92702 3.05063 3.63996 3.94652 3.99989 4.15271 4.17829 4.32060 4.51746 4.56253 4.62253 4.72930 4.78754 4.81894 4.82045 4.99966 5.06192 5.10430 5.23371 5.31048 5.38218 5.45155 5.80737 6.08877 6.51426 6.61013 7.12223 7.23911 8.77051 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.013071 B = 0.010557 C = 0.006366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.562363 B = 2651.606573 C = 4397.000866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.194 4.194 3 C -0.112 4.112 4 C -0.177 4.177 5 C 0.569 3.431 6 O -0.574 6.574 7 N -0.564 5.564 8 C 0.196 3.804 9 C -0.541 4.541 10 H 0.029 0.971 11 C 0.029 3.971 12 N -0.931 5.931 13 Si 0.920 3.080 14 H -0.250 1.250 15 H -0.278 1.278 16 H -0.239 1.239 17 C 0.063 3.937 18 C -0.174 4.174 19 C -0.190 4.190 20 C -0.235 4.235 21 S 0.192 5.808 22 H 0.082 0.918 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.154 0.846 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.272 0.728 29 H 0.142 0.858 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.062 0.938 34 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.435 3.193 6.535 14.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.311 4.311 3 C -0.140 4.140 4 C -0.194 4.194 5 C 0.358 3.642 6 O -0.458 6.458 7 N -0.290 5.290 8 C 0.074 3.926 9 C -0.579 4.579 10 H 0.047 0.953 11 C -0.172 4.172 12 N -0.570 5.570 13 Si 0.741 3.259 14 H -0.174 1.174 15 H -0.203 1.203 16 H -0.162 1.162 17 C -0.041 4.041 18 C -0.212 4.212 19 C -0.229 4.229 20 C -0.372 4.372 21 S 0.458 5.542 22 H 0.101 0.899 23 H 0.106 0.894 24 H 0.110 0.890 25 H 0.172 0.828 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.160 0.840 30 H 0.127 0.873 31 H 0.139 0.861 32 H 0.132 0.868 33 H 0.081 0.919 34 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -12.748 2.009 6.242 14.335 hybrid contribution 1.246 0.870 -0.071 1.521 sum -11.502 2.879 6.171 13.366 Atomic orbital electron populations 1.20455 0.84524 1.04216 1.04271 1.24798 1.01968 0.95023 1.09329 1.20953 0.89283 1.00407 1.03405 1.20330 0.94827 0.92538 1.11682 1.18041 0.81972 0.86581 0.77560 1.90554 1.82066 1.26139 1.47038 1.47233 1.13744 1.10543 1.57525 1.20355 0.97639 0.79599 0.95015 1.21365 1.35230 0.98851 1.02465 0.95276 1.25736 0.93816 0.97506 1.00149 1.70027 1.37634 1.13059 1.36241 0.86113 0.79701 0.79769 0.80295 1.17394 1.20291 1.16162 1.21883 0.95268 0.85093 1.01842 1.23674 1.02414 0.94015 1.01068 1.23122 1.01105 1.05141 0.93514 1.27088 1.07103 0.98465 1.04517 1.82701 0.92829 1.08833 1.69868 0.89900 0.89427 0.89005 0.82838 0.93841 0.91612 0.91838 0.84020 0.87285 0.86127 0.86764 0.91945 0.79164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.29 10.35 71.24 0.74 -0.55 16 2 C -0.19 -5.19 6.44 24.51 0.16 -5.04 16 3 C -0.11 -3.64 10.08 22.67 0.23 -3.41 16 4 C -0.18 -7.09 5.65 -19.87 -0.11 -7.20 16 5 C 0.57 25.39 7.33 86.59 0.63 26.02 16 6 O -0.57 -26.68 12.65 -4.16 -0.05 -26.73 16 7 N -0.56 -24.78 2.83 -806.28 -2.28 -27.06 16 8 C 0.20 8.83 3.78 85.63 0.32 9.16 16 9 C -0.54 -29.19 8.23 25.60 0.21 -28.98 16 10 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 11 C 0.03 1.53 5.32 84.66 0.45 1.98 16 12 N -0.93 -54.48 13.96 21.45 0.30 -54.18 16 13 Si 0.92 38.68 27.28 68.60 1.87 40.55 16 14 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 15 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 16 H -0.24 -9.16 6.54 99.48 0.65 -8.51 16 17 C 0.06 2.45 6.62 44.99 0.30 2.74 16 18 C -0.17 -5.91 9.63 30.62 0.29 -5.61 16 19 C -0.19 -7.14 9.86 30.61 0.30 -6.84 16 20 C -0.23 -9.31 8.45 67.30 0.57 -8.74 16 21 S 0.19 5.73 22.99 -56.49 -1.30 4.43 16 22 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.15 4.60 8.06 -2.91 -0.02 4.58 16 26 H 0.04 1.87 7.18 -2.39 -0.02 1.85 16 27 H 0.07 2.86 3.58 -2.39 -0.01 2.85 16 28 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 29 H 0.14 4.87 8.14 -2.39 -0.02 4.85 16 30 H 0.11 4.22 5.36 -2.42 -0.01 4.21 16 31 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 32 H 0.11 3.62 8.14 -2.38 -0.02 3.60 16 33 H 0.06 2.75 7.46 -2.39 -0.02 2.74 16 34 H 0.19 8.71 3.55 -2.91 -0.01 8.70 16 Total: -1.00 -65.64 292.59 3.70 -61.95 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 1.06 Total: 27.50 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 4.09 Total: -26.46 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -1.98 Total: -81.24 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.05 Total: -26.73 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 1.87 Total: 40.55 kcal Atomic # 16 Polarization: 5.73 SS G_CDS: -1.30 Total: 4.43 kcal Total: -65.64 3.70 -61.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381141534.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.615 kcal (2) G-P(sol) polarization free energy of solvation -65.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds