Wall clock time and date at job start Mon Mar 30 2020 06:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47272 * 2 1 4 4 N 1.46499 * 109.47091 * 120.00236 * 2 1 3 5 5 C 1.36928 * 120.00267 * 275.00309 * 4 2 1 6 6 H 1.08004 * 120.00130 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00303 * 180.02562 * 5 4 2 8 8 N 1.31622 * 119.99744 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00255 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47163 * 89.99725 * 9 7 5 11 11 H 1.48500 * 109.47004 * 209.99668 * 9 7 5 12 12 H 1.48501 * 109.47019 * 329.99406 * 9 7 5 13 13 C 1.50700 * 109.47022 * 240.00203 * 2 1 3 14 14 C 1.33998 * 124.92200 * 100.00380 * 13 2 1 15 15 C 1.46790 * 106.18519 * 179.97438 * 14 13 2 16 16 C 1.39424 * 134.32840 * 179.97438 * 15 14 13 17 17 C 1.37826 * 119.59220 * 179.65702 * 16 15 14 18 18 Cl 1.73591 * 119.87835 * 180.30463 * 17 16 15 19 19 C 1.38865 * 120.24313 * 0.62275 * 17 16 15 20 20 C 1.37809 * 120.67863 * 359.40548 * 19 17 16 21 21 C 1.38926 * 119.97622 * 0.27584 * 20 19 17 22 22 O 1.34439 * 124.92550 * 279.97763 * 13 2 1 23 23 H 1.09009 * 109.46894 * 59.99560 * 1 2 3 24 24 H 1.08998 * 109.47657 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47064 * 300.00133 * 1 2 3 26 26 H 0.97004 * 119.99367 * 94.99494 * 4 2 1 27 27 H 0.97005 * 119.99702 * 180.02562 * 8 7 5 28 28 H 1.08000 * 126.90576 * 0.02562 * 14 13 2 29 29 H 1.07999 * 120.20492 * 0.02562 * 16 15 14 30 30 H 1.08002 * 119.66259 * 179.68822 * 19 17 16 31 31 H 1.08003 * 120.01163 * 180.30141 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1490 -0.0077 2.3757 6 1 1.8925 1.0403 2.4242 7 6 2.6122 -0.6620 3.5089 8 7 2.9253 -1.9390 3.4497 9 14 2.7913 0.2699 5.1180 10 1 1.5239 0.1788 5.8864 11 1 3.8962 -0.3233 5.9132 12 1 3.0961 1.6952 4.8332 13 6 2.0323 -0.7104 -1.2305 14 6 2.4679 -0.1031 -2.3427 15 6 2.8546 -1.1742 -3.2690 16 6 3.3722 -1.2032 -4.5633 17 6 3.6383 -2.4153 -5.1629 18 17 4.2903 -2.4599 -6.7711 19 6 3.3806 -3.6011 -4.4878 20 6 2.8684 -3.5849 -3.2085 21 6 2.5994 -2.3735 -2.5838 22 8 2.1088 -2.0452 -1.3713 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.2489 -1.6319 1.1524 27 1 3.2487 -2.3963 4.2418 28 1 2.5241 0.9605 -2.5213 29 1 3.5691 -0.2814 -5.0905 30 1 3.5880 -4.5458 -4.9685 31 1 2.6766 -4.5136 -2.6916 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381317547.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:03 Heat of formation + Delta-G solvation = 11.563031 kcal Electronic energy + Delta-G solvation = -16942.155687 eV Core-core repulsion = 14022.307872 eV Total energy + Delta-G solvation = -2919.847815 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.51237 -39.22645 -37.48373 -37.07182 -34.43854 -33.44300 -31.24656 -30.83808 -29.38546 -26.21484 -24.48443 -23.76558 -22.53644 -21.66987 -19.40404 -18.43727 -18.07718 -17.26613 -16.95738 -16.44011 -15.60761 -15.45568 -15.19073 -14.57350 -14.43895 -14.14713 -14.08140 -13.77088 -13.51149 -13.24225 -12.79917 -12.60828 -12.38722 -12.36720 -12.20991 -12.04237 -11.84854 -11.71559 -11.21195 -11.00413 -9.50661 -9.22898 -9.10077 -7.96173 -5.28392 -0.18852 0.10056 1.05445 1.32480 1.49190 1.51105 1.59284 1.72781 2.50885 2.55085 3.28707 3.39540 3.61806 3.86549 3.94235 4.07991 4.17003 4.24694 4.40057 4.53775 4.57200 4.79652 4.88759 4.99524 5.01907 5.09220 5.14814 5.36748 5.40979 5.46919 5.52072 6.13185 6.25174 7.29632 7.97653 8.23454 9.27256 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.039200 B = 0.003938 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.105978 B = 7108.133362 C = 7342.131974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.237 3.763 3 H 0.094 0.906 4 N -0.737 5.737 5 C -0.246 4.246 6 H 0.088 0.912 7 C -0.075 4.075 8 N -0.971 5.971 9 Si 0.978 3.022 10 H -0.286 1.286 11 H -0.299 1.299 12 H -0.264 1.264 13 C 0.043 3.957 14 C -0.210 4.210 15 C -0.129 4.129 16 C -0.065 4.065 17 C -0.056 4.056 18 Cl -0.055 7.055 19 C -0.082 4.082 20 C -0.099 4.099 21 C 0.023 3.977 22 O -0.207 6.207 23 H 0.078 0.922 24 H 0.037 0.963 25 H 0.060 0.940 26 H 0.374 0.626 27 H 0.251 0.749 28 H 0.187 0.813 29 H 0.157 0.843 30 H 0.173 0.827 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.353 0.817 -19.316 19.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.129 3.871 3 H 0.112 0.888 4 N -0.377 5.377 5 C -0.377 4.377 6 H 0.106 0.894 7 C -0.267 4.267 8 N -0.621 5.621 9 Si 0.806 3.194 10 H -0.213 1.213 11 H -0.226 1.226 12 H -0.188 1.188 13 C -0.005 4.005 14 C -0.229 4.229 15 C -0.130 4.130 16 C -0.084 4.084 17 C -0.083 4.083 18 Cl -0.026 7.026 19 C -0.101 4.101 20 C -0.118 4.118 21 C -0.024 4.024 22 O -0.109 6.109 23 H 0.097 0.903 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.206 0.794 27 H 0.060 0.940 28 H 0.204 0.796 29 H 0.174 0.826 30 H 0.190 0.810 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.365 0.776 -19.138 19.157 hybrid contribution 0.276 -0.163 1.021 1.070 sum -0.088 0.614 -18.117 18.128 Atomic orbital electron populations 1.22329 0.95539 1.01284 1.02235 1.19341 0.93828 0.94290 0.79660 0.88811 1.42626 1.78528 1.10550 1.06024 1.19697 1.35652 0.94684 0.87647 0.89376 1.25652 1.02391 0.96857 1.01782 1.69862 1.52143 1.10527 1.29551 0.85084 0.76820 0.78189 0.79303 1.21314 1.22561 1.18845 1.23237 0.99459 0.79654 0.98199 1.22461 1.07694 1.00549 0.92229 1.19989 1.04234 0.92842 0.95931 1.20508 0.97454 0.98295 0.92094 1.20718 1.04335 0.94658 0.88548 1.98364 1.84550 1.98852 1.20871 1.21044 0.97884 0.98588 0.92556 1.20183 1.01944 0.94821 0.94836 1.20302 1.00627 0.97081 0.84415 1.84019 1.68913 1.25136 1.32796 0.90325 0.94421 0.92066 0.79417 0.94007 0.79609 0.82556 0.80963 0.82787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.30 9.47 71.98 0.68 -4.61 16 2 C 0.24 9.27 3.33 44.25 0.15 9.42 16 3 H 0.09 3.38 8.06 -2.39 -0.02 3.36 16 4 N -0.74 -37.55 5.11 -326.51 -1.67 -39.22 16 5 C -0.25 -13.35 9.93 84.03 0.83 -12.51 16 6 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 7 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 8 N -0.97 -60.02 13.06 21.65 0.28 -59.73 16 9 Si 0.98 45.44 29.55 68.60 2.03 47.47 16 10 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 12 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 13 C 0.04 1.58 6.05 24.72 0.15 1.73 16 14 C -0.21 -6.40 10.99 23.54 0.26 -6.14 16 15 C -0.13 -3.85 6.40 -20.21 -0.13 -3.98 16 16 C -0.06 -1.55 9.87 22.46 0.22 -1.33 16 17 C -0.06 -1.21 6.32 22.32 0.14 -1.07 16 18 Cl -0.06 -1.01 28.95 -2.72 -0.08 -1.08 16 19 C -0.08 -1.72 9.79 22.32 0.22 -1.50 16 20 C -0.10 -2.58 10.06 22.33 0.22 -2.35 16 21 C 0.02 0.77 7.41 22.98 0.17 0.94 16 22 O -0.21 -8.24 10.19 -9.34 -0.10 -8.33 16 23 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 24 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.37 21.22 7.47 -92.70 -0.69 20.53 16 27 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 28 H 0.19 4.35 8.06 -2.91 -0.02 4.33 16 29 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 30 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 31 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -65.60 291.62 4.32 -61.28 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.46 Total: 24.80 kcal Atomic # 6 Polarization: -28.57 SS G_CDS: 3.39 Total: -25.19 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -1.39 Total: -98.95 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -0.10 Total: -8.33 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.08 Total: -1.08 kcal Total: -65.60 4.32 -61.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381317547.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.846 kcal (2) G-P(sol) polarization free energy of solvation -65.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds