Wall clock time and date at job start Mon Mar 30 2020 06:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.46892 * 2 1 4 4 N 1.46504 * 109.46949 * 239.99720 * 2 1 3 5 5 C 1.36940 * 119.99522 * 85.00417 * 4 2 1 6 6 H 1.07995 * 120.00031 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99332 * 179.97438 * 5 4 2 8 8 N 1.31623 * 119.99441 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00510 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47286 * 90.00029 * 9 7 5 11 11 H 1.48504 * 109.47338 * 210.00236 * 9 7 5 12 12 H 1.48506 * 109.47086 * 330.00288 * 9 7 5 13 13 C 1.50709 * 109.47002 * 120.00225 * 2 1 3 14 14 C 1.33990 * 124.91689 * 259.97640 * 13 2 1 15 15 C 1.46792 * 106.17970 * 179.97438 * 14 13 2 16 16 C 1.39426 * 134.32232 * 179.97438 * 15 14 13 17 17 C 1.37827 * 119.59117 * 180.02562 * 16 15 14 18 18 Cl 1.73599 * 119.87665 * 180.02562 * 17 16 15 19 19 C 1.38860 * 120.24310 * 0.28327 * 17 16 15 20 20 C 1.37819 * 120.68152 * 359.45727 * 19 17 16 21 21 C 1.38928 * 119.97346 * 0.51953 * 20 19 17 22 22 O 1.34439 * 124.92458 * 79.97221 * 13 2 1 23 23 H 1.09003 * 109.46972 * 60.00375 * 1 2 3 24 24 H 1.09003 * 109.47171 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47252 * 300.00157 * 1 2 3 26 26 H 0.96994 * 120.00058 * 264.99972 * 4 2 1 27 27 H 0.97005 * 119.99529 * 180.02562 * 8 7 5 28 28 H 1.08001 * 126.91517 * 359.97438 * 14 13 2 29 29 H 1.08006 * 120.20609 * 359.97438 * 16 15 14 30 30 H 1.07999 * 119.66072 * 179.70058 * 19 17 16 31 31 H 1.07999 * 120.01144 * 180.28665 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8920 1.0403 -2.4243 7 6 2.6123 -0.6618 -3.5090 8 7 2.7385 -0.0051 -4.6426 9 14 3.0578 -2.4739 -3.4248 10 1 1.8611 -3.2932 -3.7440 11 1 4.1335 -2.7654 -4.4062 12 1 3.5330 -2.8038 -2.0570 13 6 2.0323 -0.7105 1.2305 14 6 2.4683 -0.1032 2.3425 15 6 2.8537 -1.1744 3.2693 16 6 3.3718 -1.2034 4.5634 17 6 3.6300 -2.4156 5.1661 18 17 4.2745 -2.4603 6.7774 19 6 3.3816 -3.6013 4.4873 20 6 2.8647 -3.5852 3.2098 21 6 2.5970 -2.3737 2.5846 22 8 2.1079 -2.0453 1.3716 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 2.2490 -1.6318 -1.1526 27 1 3.0618 -0.4624 -5.4346 28 1 2.5248 0.9604 2.5211 29 1 3.5703 -0.2815 5.0900 30 1 3.5920 -4.5458 4.9668 31 1 2.6713 -4.5139 2.6936 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381317548.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:04 Heat of formation + Delta-G solvation = 14.785729 kcal Electronic energy + Delta-G solvation = -17028.793871 eV Core-core repulsion = 14109.085803 eV Total energy + Delta-G solvation = -2919.708068 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.56176 -39.26211 -37.61177 -37.13988 -34.47960 -33.56796 -31.45466 -31.19389 -29.49670 -26.08222 -24.35533 -23.77801 -22.52714 -21.76717 -19.99373 -18.48568 -18.06597 -17.30288 -16.94321 -16.62528 -15.80193 -15.23159 -15.14710 -14.73469 -14.56151 -14.25237 -14.13345 -13.86233 -13.66223 -13.53671 -12.92591 -12.65702 -12.43818 -12.34673 -12.23324 -12.03519 -11.86511 -11.80166 -11.25845 -11.06193 -9.54404 -9.46013 -9.21770 -8.06599 -5.41731 -0.21905 0.07163 1.04297 1.28279 1.35780 1.36167 1.43779 1.65537 2.44143 2.48574 3.19888 3.27257 3.54142 3.59940 3.91456 4.03451 4.14103 4.19958 4.37753 4.48223 4.53550 4.77567 4.85493 4.96206 4.99853 5.06871 5.11466 5.33830 5.38213 5.45528 5.70819 6.08510 6.17861 6.99795 7.73173 7.91759 9.13906 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.032835 B = 0.004494 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.553051 B = 6228.633028 C = 6672.731342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.243 3.757 3 H 0.095 0.905 4 N -0.752 5.752 5 C -0.233 4.233 6 H 0.073 0.927 7 C -0.053 4.053 8 N -0.976 5.976 9 Si 0.944 3.056 10 H -0.277 1.277 11 H -0.292 1.292 12 H -0.264 1.264 13 C 0.039 3.961 14 C -0.203 4.203 15 C -0.130 4.130 16 C -0.065 4.065 17 C -0.056 4.056 18 Cl -0.056 7.056 19 C -0.082 4.082 20 C -0.098 4.098 21 C 0.025 3.975 22 O -0.207 6.207 23 H 0.057 0.943 24 H 0.046 0.954 25 H 0.080 0.920 26 H 0.366 0.634 27 H 0.259 0.741 28 H 0.186 0.814 29 H 0.156 0.844 30 H 0.173 0.827 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.188 -5.866 23.468 24.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.136 3.864 3 H 0.113 0.887 4 N -0.396 5.396 5 C -0.363 4.363 6 H 0.090 0.910 7 C -0.245 4.245 8 N -0.626 5.626 9 Si 0.772 3.228 10 H -0.203 1.203 11 H -0.219 1.219 12 H -0.189 1.189 13 C -0.010 4.010 14 C -0.223 4.223 15 C -0.131 4.131 16 C -0.083 4.083 17 C -0.083 4.083 18 Cl -0.027 7.027 19 C -0.100 4.100 20 C -0.116 4.116 21 C -0.022 4.022 22 O -0.109 6.109 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.099 0.901 26 H 0.199 0.801 27 H 0.068 0.932 28 H 0.203 0.797 29 H 0.173 0.827 30 H 0.190 0.810 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.168 -5.879 23.259 23.991 hybrid contribution 0.383 -0.817 -0.516 1.039 sum 0.551 -6.696 22.743 23.715 Atomic orbital electron populations 1.22313 0.95001 1.01844 1.02368 1.19271 0.94017 0.94335 0.78820 0.88713 1.42814 1.80008 1.09826 1.06902 1.19045 1.35689 0.95016 0.86570 0.90957 1.25352 1.02031 1.01834 0.95319 1.69848 1.54219 1.37460 1.01070 0.85579 0.77975 0.81754 0.77537 1.20267 1.21868 1.18901 1.23097 0.99989 0.79701 0.98179 1.22474 1.07001 1.00610 0.92186 1.19984 1.04266 0.92911 0.95943 1.20517 0.97388 0.98295 0.92122 1.20737 1.04381 0.94708 0.88447 1.98370 1.84849 1.98851 1.20655 1.21065 0.97775 0.98539 0.92637 1.20188 1.01820 0.94823 0.94816 1.20262 1.00606 0.96984 0.84359 1.83968 1.69209 1.24899 1.32797 0.92365 0.93495 0.90107 0.80126 0.93178 0.79712 0.82678 0.80951 0.82457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.06 9.47 71.98 0.68 -4.37 16 2 C 0.24 8.98 3.33 44.25 0.15 9.13 16 3 H 0.10 3.36 8.06 -2.39 -0.02 3.34 16 4 N -0.75 -35.25 4.92 -326.49 -1.61 -36.86 16 5 C -0.23 -12.94 10.41 84.03 0.87 -12.07 16 6 H 0.07 4.27 8.06 -2.91 -0.02 4.24 16 7 C -0.05 -3.10 5.50 84.86 0.47 -2.63 16 8 N -0.98 -61.61 13.97 21.65 0.30 -61.31 16 9 Si 0.94 46.12 27.73 68.60 1.90 48.03 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 11 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 12 H -0.26 -12.21 6.52 99.48 0.65 -11.56 16 13 C 0.04 1.30 6.05 24.72 0.15 1.45 16 14 C -0.20 -5.72 10.99 23.54 0.26 -5.46 16 15 C -0.13 -3.55 6.40 -20.21 -0.13 -3.68 16 16 C -0.06 -1.42 9.87 22.46 0.22 -1.20 16 17 C -0.06 -1.11 6.32 22.32 0.14 -0.97 16 18 Cl -0.06 -0.95 28.95 -2.72 -0.08 -1.02 16 19 C -0.08 -1.51 9.79 22.32 0.22 -1.29 16 20 C -0.10 -2.22 10.06 22.34 0.22 -1.99 16 21 C 0.03 0.75 7.41 22.98 0.17 0.92 16 22 O -0.21 -7.31 10.19 -9.25 -0.09 -7.41 16 23 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.37 17.31 5.33 -92.71 -0.49 16.82 16 27 H 0.26 15.63 8.31 -92.70 -0.77 14.86 16 28 H 0.19 4.04 8.06 -2.91 -0.02 4.02 16 29 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 30 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 31 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -66.37 288.50 4.46 -61.92 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.60 Total: 18.83 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 3.43 Total: -22.17 kcal Atomic # 7 Polarization: -96.86 SS G_CDS: -1.30 Total: -98.17 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.09 Total: -7.41 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.90 Total: 48.03 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.08 Total: -1.02 kcal Total: -66.37 4.46 -61.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381317548.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.703 kcal (2) G-P(sol) polarization free energy of solvation -66.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds