Wall clock time and date at job start Mon Mar 30 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47229 * 270.00614 * 3 2 1 5 5 H 1.48500 * 109.46876 * 30.00454 * 3 2 1 6 6 H 1.48499 * 109.47161 * 150.00179 * 3 2 1 7 7 C 1.37873 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99888 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47041 * 179.97438 * 11 10 9 13 13 C 1.31828 * 124.29780 * 89.99894 * 12 11 10 14 14 C 1.45403 * 114.88773 * 179.97438 * 13 12 11 15 15 C 1.41213 * 129.27542 * 179.97438 * 14 13 12 16 16 C 1.37265 * 120.31956 * 180.02562 * 15 14 13 17 17 F 1.35091 * 119.80325 * 179.97438 * 16 15 14 18 18 C 1.39052 * 120.38910 * 359.95352 * 16 15 14 19 19 C 1.37421 * 120.17399 * 0.04627 * 18 16 15 20 20 C 1.39701 * 111.84445 * 0.02562 * 14 13 12 21 21 S 1.75289 * 124.30491 * 269.70354 * 12 11 10 22 22 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47103 * 60.00168 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00046 * 9 7 2 25 25 H 1.00904 * 110.99860 * 56.04901 * 10 9 7 26 26 H 1.08997 * 109.47334 * 299.99788 * 11 10 9 27 27 H 1.08995 * 109.47296 * 60.00089 * 11 10 9 28 28 H 1.07999 * 122.56333 * 359.97438 * 13 12 11 29 29 H 1.07992 * 119.83777 * 359.97438 * 15 14 13 30 30 H 1.07994 * 119.90985 * 180.02562 * 18 16 15 31 31 H 1.08003 * 119.82023 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 1.5055 -4.9070 0.0001 12 6 2.5151 -6.0259 -0.0006 13 6 3.0135 -6.5773 1.0882 14 6 3.9738 -7.6428 0.8498 15 6 4.6853 -8.4300 1.7816 16 6 5.5575 -9.3974 1.3486 17 9 6.2331 -10.1441 2.2491 18 6 5.7494 -9.6135 -0.0116 19 6 5.0665 -8.8580 -0.9342 20 6 4.1744 -7.8662 -0.5146 21 16 3.1702 -6.7645 -1.4490 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 2.8407 -3.5486 0.7809 26 1 0.8810 -4.9812 0.8903 27 1 0.8804 -4.9817 -0.8896 28 1 2.7302 -6.2619 2.0815 29 1 4.5430 -8.2696 2.8400 30 1 6.4373 -10.3770 -0.3437 31 1 5.2203 -9.0304 -1.9892 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381795933.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:09 Heat of formation + Delta-G solvation = -25.030910 kcal Electronic energy + Delta-G solvation = -16199.654839 eV Core-core repulsion = 13292.636688 eV Total energy + Delta-G solvation = -2907.018151 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.92934 -40.40503 -37.85790 -35.84556 -34.36363 -31.84195 -31.15802 -28.72755 -26.27267 -24.42063 -23.65437 -23.13596 -21.23610 -19.16486 -18.52477 -17.90246 -17.40219 -16.89571 -16.64280 -16.51269 -15.83099 -15.42883 -15.34578 -14.77856 -14.64515 -14.32276 -14.15651 -13.92296 -13.53143 -13.11914 -12.85717 -12.61317 -12.59472 -12.18046 -12.06731 -11.84133 -11.69020 -11.33672 -10.67713 -10.66012 -9.55418 -9.19961 -8.71125 -8.23847 -6.34905 -0.41018 -0.01037 0.47685 0.99378 1.16700 1.41914 1.43294 1.54559 2.39685 2.47959 3.06518 3.09917 3.45144 3.67438 3.76434 3.95318 4.06676 4.18626 4.33538 4.54687 4.60903 4.75349 4.82802 4.93848 5.04235 5.07714 5.11519 5.22913 5.35243 5.58592 5.75766 5.97838 6.35964 6.62557 6.84502 7.35933 8.87586 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.035625 B = 0.003499 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.766467 B = 7999.824886 C = 8237.354012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.208 3.792 10 N -0.683 5.683 11 C 0.123 3.877 12 C -0.144 4.144 13 C -0.126 4.126 14 C -0.060 4.060 15 C -0.122 4.122 16 C 0.089 3.911 17 F -0.141 7.141 18 C -0.132 4.132 19 C -0.052 4.052 20 C -0.169 4.169 21 S 0.114 5.886 22 H 0.266 0.734 23 H 0.004 0.996 24 H -0.032 1.032 25 H 0.338 0.662 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.157 0.843 29 H 0.151 0.849 30 H 0.171 0.829 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.976 -20.122 0.573 22.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.797 3.203 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.081 3.919 10 N -0.314 5.314 11 C -0.007 4.007 12 C -0.260 4.260 13 C -0.157 4.157 14 C -0.068 4.068 15 C -0.143 4.143 16 C 0.067 3.933 17 F -0.120 7.120 18 C -0.153 4.153 19 C -0.074 4.074 20 C -0.285 4.285 21 S 0.380 5.620 22 H 0.075 0.925 23 H 0.022 0.978 24 H -0.014 1.014 25 H 0.155 0.845 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.175 0.825 29 H 0.169 0.831 30 H 0.189 0.811 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 9.618 -19.706 -1.637 21.988 hybrid contribution -0.125 0.699 2.595 2.690 sum 9.493 -19.007 0.958 21.267 Atomic orbital electron populations 1.70078 1.07726 1.28077 1.51399 1.25923 0.95787 1.03299 0.94533 0.85339 0.78529 0.78021 0.78452 1.19905 1.20629 1.18795 1.21512 0.93808 0.91360 1.50788 0.91825 1.19242 0.90541 0.88411 0.93729 1.60600 1.20447 1.00651 1.49707 1.20406 0.92539 0.86240 1.01557 1.23865 1.03616 1.01827 0.96709 1.20993 0.98049 0.96686 0.99935 1.19041 0.98306 0.97291 0.92194 1.20977 0.96924 0.95544 1.00843 1.17456 0.95193 0.93210 0.87395 1.91501 1.78381 1.74894 1.67226 1.21299 1.01913 1.01966 0.90148 1.20639 0.93178 0.92194 1.01420 1.23114 1.04921 1.03570 0.96874 1.84200 1.40139 1.30480 1.07169 0.92543 0.97782 1.01394 0.84503 0.93147 0.90750 0.82538 0.83089 0.81117 0.82008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 2 C 0.00 0.17 5.46 84.65 0.46 0.63 16 3 Si 0.97 44.02 29.54 68.60 2.03 46.04 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 7 C -0.54 -30.40 9.32 25.60 0.24 -30.16 16 8 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 9 C 0.21 10.99 5.44 85.56 0.47 11.45 16 10 N -0.68 -29.07 6.48 -521.97 -3.38 -32.46 16 11 C 0.12 4.28 6.12 85.56 0.52 4.80 16 12 C -0.14 -4.28 5.89 24.90 0.15 -4.13 16 13 C -0.13 -3.33 10.21 23.33 0.24 -3.09 16 14 C -0.06 -1.47 6.04 -20.35 -0.12 -1.59 16 15 C -0.12 -2.59 10.07 22.77 0.23 -2.36 16 16 C 0.09 1.74 7.27 22.24 0.16 1.90 16 17 F -0.14 -2.83 17.26 44.97 0.78 -2.06 16 18 C -0.13 -2.12 10.01 22.27 0.22 -1.89 16 19 C -0.05 -0.93 10.06 22.47 0.23 -0.70 16 20 C -0.17 -4.02 6.48 23.01 0.15 -3.87 16 21 S 0.11 3.05 23.20 -56.49 -1.31 1.74 16 22 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 23 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 24 H -0.03 -1.77 8.14 -2.39 -0.02 -1.78 16 25 H 0.34 13.74 8.71 -89.69 -0.78 12.96 16 26 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 27 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.16 3.64 8.06 -2.91 -0.02 3.61 16 29 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 30 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 31 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -63.57 293.05 1.71 -61.86 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.37 Total: 9.40 kcal Atomic # 6 Polarization: -31.94 SS G_CDS: 2.94 Total: -29.00 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -3.10 Total: -87.98 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.78 Total: -2.06 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -1.31 Total: 1.74 kcal Total: -63.57 1.71 -61.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381795933.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.829 kcal (2) G-P(sol) polarization free energy of solvation -63.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds