Wall clock time and date at job start Mon Mar 30 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42904 * 109.46919 * 2 1 4 4 C 1.35940 * 117.00362 * 179.97438 * 3 2 1 5 5 C 1.39156 * 119.81495 * 359.97438 * 4 3 2 6 6 C 1.37661 * 120.35651 * 179.97438 * 5 4 3 7 7 C 1.39691 * 119.79219 * 0.02562 * 6 5 4 8 8 N 1.35989 * 133.59076 * 179.97438 * 7 6 5 9 9 C 1.30913 * 108.73069 * 180.02562 * 8 7 6 10 10 S 1.76201 * 124.96908 * 179.97438 * 9 8 7 11 11 C 1.76199 * 99.99986 * 0.02562 * 10 9 8 12 12 H 1.08002 * 120.00405 * 0.02562 * 11 10 9 13 13 C 1.38723 * 119.99795 * 179.72337 * 11 10 9 14 14 N 1.31584 * 120.00222 * 0.27767 * 13 11 10 15 15 Si 1.86803 * 119.99945 * 180.27922 * 13 11 10 16 16 H 1.48496 * 109.47141 * 59.99775 * 15 13 11 17 17 H 1.48504 * 109.47036 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46993 * 300.00052 * 15 13 11 19 19 O 1.34595 * 110.05747 * 0.25875 * 9 8 7 20 20 C 1.35257 * 108.15519 * 359.57165 * 19 9 8 21 21 C 1.38466 * 119.81981 * 180.02562 * 4 3 2 22 22 H 1.09004 * 109.46415 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47335 * 299.99648 * 1 2 3 24 24 H 1.09001 * 109.46858 * 60.00488 * 1 2 3 25 25 H 1.08999 * 109.47335 * 240.00352 * 2 1 3 26 26 H 1.09001 * 109.46858 * 119.99512 * 2 1 3 27 27 H 1.07995 * 119.82061 * 0.02562 * 5 4 3 28 28 H 1.07995 * 120.10385 * 180.02562 * 6 5 4 29 29 H 0.96996 * 120.00435 * 179.97438 * 14 13 11 30 30 H 1.07998 * 120.07104 * 0.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3540 1.5256 0.0005 5 6 4.1982 0.4193 0.0016 6 6 5.5646 0.5869 0.0016 7 6 6.1059 1.8747 0.0011 8 7 7.3772 2.3574 0.0015 9 6 7.3302 3.6657 0.0012 10 16 8.7368 4.7268 0.0021 11 6 10.0261 3.5258 0.0025 12 1 9.7837 2.4734 0.0018 13 6 11.3525 3.9322 -0.0025 14 7 11.6478 5.2144 -0.0021 15 14 12.7193 2.6589 -0.0100 16 1 12.5992 1.8109 -1.2230 17 1 14.0358 3.3460 -0.0140 18 1 12.6094 1.8077 1.2019 19 8 6.0501 4.0816 0.0064 20 6 5.2521 2.9895 0.0005 21 6 3.8791 2.8068 0.0011 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7792 -0.5760 0.0016 28 1 6.2160 -0.2744 0.0020 29 1 12.5752 5.4986 -0.0053 30 1 3.2195 3.6620 0.0015 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383440826.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:49 Heat of formation + Delta-G solvation = -29.120034 kcal Electronic energy + Delta-G solvation = -16614.788265 eV Core-core repulsion = 13695.220007 eV Total energy + Delta-G solvation = -2919.568259 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.98021 -40.79690 -37.72757 -35.46164 -34.81489 -32.71011 -31.60794 -29.76197 -27.84975 -25.34246 -24.66552 -23.14424 -22.75236 -20.45206 -19.41013 -18.52625 -18.08958 -17.78438 -17.03405 -16.96897 -16.55327 -16.32408 -15.15775 -14.98587 -14.35902 -14.20040 -14.04726 -13.39127 -13.33200 -13.11665 -13.09432 -13.01666 -12.86083 -12.47760 -12.08791 -11.99965 -11.61082 -11.37130 -11.22470 -11.03698 -10.01130 -9.65786 -8.58685 -8.56477 -6.41046 -0.32397 0.14287 0.28219 1.31843 1.36633 1.45467 1.51387 1.68496 2.08290 2.49584 2.58331 2.83781 3.03113 3.45349 3.70369 3.79584 3.99798 4.13154 4.23053 4.31577 4.43653 4.64034 4.73762 4.91877 5.00557 5.04104 5.13943 5.19076 5.30557 5.41174 5.44986 6.15724 6.31782 6.62226 6.87705 8.50594 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.048045 B = 0.004001 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.646116 B = 6997.148949 C = 7559.343084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.039 3.961 3 O -0.320 6.320 4 C 0.150 3.850 5 C -0.177 4.177 6 C -0.039 4.039 7 C -0.023 4.023 8 N -0.520 5.520 9 C 0.194 3.806 10 S 0.173 5.827 11 C -0.570 4.570 12 H 0.096 0.904 13 C 0.035 3.965 14 N -0.902 5.902 15 Si 1.004 2.996 16 H -0.265 1.265 17 H -0.265 1.265 18 H -0.265 1.265 19 O -0.217 6.217 20 C 0.008 3.992 21 C -0.140 4.140 22 H 0.103 0.897 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.181 0.819 28 H 0.153 0.847 29 H 0.285 0.715 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.570 -11.303 -0.015 20.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.035 4.035 3 O -0.234 6.234 4 C 0.103 3.897 5 C -0.197 4.197 6 C -0.060 4.060 7 C -0.137 4.137 8 N -0.256 5.256 9 C -0.121 4.121 10 S 0.409 5.591 11 C -0.718 4.718 12 H 0.114 0.886 13 C -0.172 4.172 14 N -0.537 5.537 15 Si 0.824 3.176 16 H -0.189 1.189 17 H -0.190 1.190 18 H -0.189 1.189 19 O -0.112 6.112 20 C -0.045 4.045 21 C -0.160 4.160 22 H 0.121 0.879 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.199 0.801 28 H 0.171 0.829 29 H 0.094 0.906 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -16.885 -10.102 -0.012 19.676 hybrid contribution 0.373 -1.100 -0.005 1.162 sum -16.512 -11.202 -0.017 19.953 Atomic orbital electron populations 1.21820 0.91353 1.04315 1.03189 1.23243 0.96980 0.80151 1.03103 1.86065 1.16951 1.32129 1.88290 1.18259 0.83509 0.92024 0.95913 1.21426 0.91823 0.99860 1.06550 1.20373 0.95295 0.93204 0.97107 1.20553 0.88423 0.96671 1.08082 1.71147 1.22218 1.07055 1.25139 1.29658 0.88351 0.94692 0.99386 1.83682 0.85990 1.04318 1.85116 1.23463 0.91620 0.96032 1.60694 0.88614 1.26050 1.00207 0.98757 0.92202 1.69975 1.21741 1.15928 1.46043 0.84924 0.75692 0.77370 0.79573 1.18947 1.18959 1.18947 1.84597 1.16236 1.33985 1.76373 1.20287 0.93819 0.85004 1.05419 1.18749 0.88426 0.97700 1.11082 0.87886 0.91910 0.91903 0.90293 0.90294 0.80142 0.82938 0.90571 0.83236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.28 71.98 0.74 -0.65 16 2 C 0.04 0.50 5.45 71.98 0.39 0.89 16 3 O -0.32 -6.95 10.13 -92.88 -0.94 -7.89 16 4 C 0.15 3.96 6.69 22.54 0.15 4.11 16 5 C -0.18 -4.18 9.01 22.35 0.20 -3.98 16 6 C -0.04 -1.22 10.10 22.48 0.23 -0.99 16 7 C -0.02 -0.98 7.23 39.38 0.28 -0.70 16 8 N -0.52 -26.24 10.02 -304.12 -3.05 -29.29 16 9 C 0.19 9.88 8.34 130.38 1.09 10.97 16 10 S 0.17 9.24 21.89 -56.49 -1.24 8.00 16 11 C -0.57 -32.43 9.35 67.94 0.64 -31.79 16 12 H 0.10 5.56 6.84 -2.91 -0.02 5.54 16 13 C 0.04 1.89 5.49 84.85 0.47 2.36 16 14 N -0.90 -50.23 13.22 21.63 0.29 -49.95 16 15 Si 1.00 42.52 29.55 68.60 2.03 44.55 16 16 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 17 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 18 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 19 O -0.22 -10.14 10.79 -15.03 -0.16 -10.30 16 20 C 0.01 0.34 7.41 22.87 0.17 0.51 16 21 C -0.14 -4.51 9.99 22.39 0.22 -4.29 16 22 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 23 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 25 H 0.08 0.79 7.65 -2.39 -0.02 0.77 16 26 H 0.08 0.79 7.65 -2.39 -0.02 0.77 16 27 H 0.18 2.56 6.26 -2.91 -0.02 2.54 16 28 H 0.15 4.10 8.06 -2.91 -0.02 4.07 16 29 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 30 H 0.15 4.28 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -67.95 283.52 2.68 -65.27 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: 1.17 Total: 3.17 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 4.58 Total: -23.56 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -2.76 Total: -79.24 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -1.10 Total: -18.19 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: 9.24 SS G_CDS: -1.24 Total: 8.00 kcal Total: -67.95 2.68 -65.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383440826.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.151 kcal (2) G-P(sol) polarization free energy of solvation -67.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds