Wall clock time and date at job start Mon Mar 30 2020 06:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 N 1.46507 * 109.47006 * 179.97438 * 9 7 2 11 11 C 1.46502 * 120.00042 * 275.00570 * 10 9 7 12 12 C 1.53003 * 117.49695 * 8.61689 * 11 10 9 13 13 C 1.53004 * 117.49629 * 299.99445 * 11 10 9 14 14 S 1.65599 * 119.99695 * 94.99945 * 10 9 7 15 15 O 1.42103 * 103.00023 * 73.13219 * 14 10 9 16 16 C 1.76205 * 102.99856 * 180.02562 * 14 10 9 17 17 C 1.38237 * 119.99969 * 269.72825 * 16 14 10 18 18 C 1.38229 * 119.99883 * 179.76334 * 17 16 14 19 19 C 1.38235 * 120.00208 * 0.51038 * 18 17 16 20 20 C 1.38236 * 119.99677 * 359.74106 * 19 18 17 21 21 C 1.38232 * 119.99891 * 90.00048 * 16 14 10 22 22 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 24 24 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 25 25 H 1.08997 * 115.55170 * 154.32787 * 11 10 9 26 26 H 1.08997 * 117.49954 * 359.97438 * 12 11 10 27 27 H 1.09001 * 117.49185 * 145.02492 * 12 11 10 28 28 H 1.08995 * 117.49972 * 214.98322 * 13 11 10 29 29 H 1.09004 * 117.49702 * 0.02562 * 13 11 10 30 30 H 1.08001 * 119.99606 * 359.97438 * 17 16 14 31 31 H 1.08003 * 119.99686 * 180.22972 * 18 17 16 32 32 H 1.08000 * 120.00109 * 179.72534 * 19 18 17 33 33 H 1.08004 * 120.00038 * 179.97438 * 20 19 18 34 34 H 1.07999 * 120.00065 * 0.02562 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 7 2.2030 -3.6128 0.0028 11 6 2.7573 -4.0999 -1.2628 12 6 2.4649 -3.2829 -2.5230 13 6 1.7732 -4.6305 -2.3073 14 16 2.6525 -4.3208 1.4307 15 8 1.4970 -5.0619 1.7978 16 6 3.7798 -5.5729 0.9146 17 6 3.3161 -6.8410 0.6186 18 6 4.1998 -7.8219 0.2090 19 6 5.5486 -7.5376 0.1056 20 6 6.0130 -6.2709 0.4067 21 6 5.1286 -5.2885 0.8113 22 1 -0.4850 0.8401 0.0004 23 1 0.6281 -2.5552 0.8979 24 1 0.6206 -2.5586 -0.8820 25 1 3.7293 -4.5881 -1.1934 26 1 1.8599 -2.3833 -2.4105 27 1 3.2449 -3.2335 -3.2828 28 1 2.0979 -5.4676 -2.9252 29 1 0.7133 -4.6168 -2.0529 30 1 2.2629 -7.0644 0.7040 31 1 3.8369 -8.8116 -0.0259 32 1 6.2396 -8.3052 -0.2101 33 1 7.0669 -6.0489 0.3264 34 1 5.4916 -4.2991 1.0472 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385402808.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:03 Heat of formation + Delta-G solvation = 21.380316 kcal Electronic energy + Delta-G solvation = -17948.816691 eV Core-core repulsion = 15167.271386 eV Total energy + Delta-G solvation = -2781.545305 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.85243 -37.18634 -34.94897 -33.22273 -31.35331 -30.94068 -30.78217 -26.82094 -23.23141 -22.46787 -22.27309 -21.64019 -20.10230 -17.84465 -17.10438 -16.34728 -16.02197 -15.13753 -14.93184 -14.72673 -14.14573 -13.89577 -13.58219 -13.32874 -12.71689 -12.66061 -12.14720 -11.75179 -11.53461 -11.36535 -11.04832 -10.98537 -10.79809 -10.54575 -10.47112 -10.18848 -9.97237 -9.57303 -9.36465 -8.97324 -8.83934 -8.47969 -8.11849 -7.03998 -6.03506 -4.11599 1.12276 1.48738 2.73072 3.21597 3.28314 3.36995 3.40131 3.89842 4.40787 4.51244 4.74104 4.99347 5.01980 5.14005 5.27060 5.51799 5.55674 5.65529 5.66349 5.71256 5.88405 5.93217 6.10886 6.25294 6.41325 6.51553 6.52488 6.59127 6.86729 7.04065 7.04846 7.43451 7.61754 7.85967 8.00693 8.26688 8.96975 9.54823 11.02250 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.026171 B = 0.006107 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.643625 B = 4583.994139 C = 4615.869288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.067 0.933 9 C 0.264 3.736 10 N -0.860 5.860 11 C 0.105 3.895 12 C -0.175 4.175 13 C -0.217 4.217 14 S 1.569 4.431 15 O -0.912 6.912 16 C -0.477 4.477 17 C -0.042 4.042 18 C -0.143 4.143 19 C -0.094 4.094 20 C -0.144 4.144 21 C -0.044 4.044 22 H 0.262 0.738 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.110 0.890 26 H 0.117 0.883 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.125 0.875 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.306 -9.482 0.342 15.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.086 0.914 9 C 0.141 3.859 10 N -0.693 5.693 11 C -0.005 4.005 12 C -0.214 4.214 13 C -0.257 4.257 14 S 1.673 4.327 15 O -0.896 6.896 16 C -0.570 4.570 17 C -0.061 4.061 18 C -0.162 4.162 19 C -0.112 4.112 20 C -0.163 4.163 21 C -0.063 4.063 22 H 0.072 0.928 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.127 0.873 26 H 0.135 0.865 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.143 0.857 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 11.741 -9.162 1.282 14.948 hybrid contribution -0.405 -0.688 -1.672 1.853 sum 11.336 -9.850 -0.390 15.023 Atomic orbital electron populations 1.69970 1.06129 1.26896 1.50409 1.25022 0.94785 0.99265 0.95256 0.86503 0.80159 0.83570 0.77554 1.19490 1.21197 1.21016 1.21695 0.93878 0.90361 1.50755 0.91450 1.18890 0.87173 0.82177 0.97619 1.54582 1.57664 1.43180 1.13843 1.21296 0.95567 1.01000 0.82652 1.23235 1.03259 0.96088 0.98783 1.23329 0.99677 0.97389 1.05300 1.69536 0.88514 0.89276 0.85389 1.92881 1.49629 1.70384 1.76714 1.28747 1.07809 1.10502 1.09957 1.21129 0.99988 0.92308 0.92700 1.21229 0.93801 0.99415 1.01762 1.21239 0.95493 0.96767 0.97733 1.21234 0.99726 0.93762 1.01528 1.20931 0.91583 0.99140 0.94690 0.92795 0.95621 0.95579 0.87288 0.86491 0.89900 0.90216 0.89370 0.85676 0.86434 0.86375 0.85923 0.84773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.55 13.29 55.43 0.74 -24.81 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -13.46 8.74 -34.44 -0.30 -13.76 16 8 H 0.07 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.26 6.63 4.78 -5.19 -0.02 6.60 16 10 N -0.86 -17.86 3.06 -108.57 -0.33 -18.19 16 11 C 0.10 1.96 5.93 -67.93 -0.40 1.56 16 12 C -0.17 -3.26 9.63 -26.73 -0.26 -3.52 16 13 C -0.22 -4.01 10.12 -26.73 -0.27 -4.28 16 14 S 1.57 28.12 14.20 -107.50 -1.53 26.59 16 15 O -0.91 -21.31 16.64 -35.23 -0.59 -21.89 16 16 C -0.48 -7.33 3.67 -39.58 -0.15 -7.48 16 17 C -0.04 -0.67 9.45 -39.59 -0.37 -1.04 16 18 C -0.14 -1.88 10.05 -39.59 -0.40 -2.28 16 19 C -0.09 -1.07 10.05 -39.58 -0.40 -1.46 16 20 C -0.14 -1.60 10.05 -39.58 -0.40 -1.99 16 21 C -0.04 -0.54 9.00 -39.58 -0.36 -0.90 16 22 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 23 H 0.03 0.71 7.99 -51.93 -0.41 0.30 16 24 H 0.03 0.71 6.56 -51.93 -0.34 0.37 16 25 H 0.11 1.83 5.94 -51.93 -0.31 1.52 16 26 H 0.12 2.55 6.15 -51.93 -0.32 2.24 16 27 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.09 1.81 8.06 -51.93 -0.42 1.39 16 30 H 0.13 2.27 7.30 -52.49 -0.38 1.89 16 31 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 32 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 34 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 301.60 15.07 4.55 4.55 Total: -1.00 -32.94 301.60 -9.87 -42.81 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -4.27 Total: 2.79 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: -3.42 Total: -27.08 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.40 Total: -43.00 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.59 Total: -21.89 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 28.12 SS G_CDS: -1.53 Total: 26.59 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.94 -9.87 -42.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385402808.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.192 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds