Wall clock time and date at job start Mon Mar 30 2020 06:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 N 1.46507 * 109.47006 * 179.97438 * 9 7 2 11 11 C 1.46502 * 120.00042 * 275.00570 * 10 9 7 12 12 C 1.53003 * 117.49695 * 8.61689 * 11 10 9 13 13 C 1.53004 * 117.49629 * 299.99445 * 11 10 9 14 14 S 1.65599 * 119.99695 * 94.99945 * 10 9 7 15 15 O 1.42103 * 103.00023 * 73.13219 * 14 10 9 16 16 C 1.76205 * 102.99856 * 180.02562 * 14 10 9 17 17 C 1.38237 * 119.99969 * 269.72825 * 16 14 10 18 18 C 1.38229 * 119.99883 * 179.76334 * 17 16 14 19 19 C 1.38235 * 120.00208 * 0.51038 * 18 17 16 20 20 C 1.38236 * 119.99677 * 359.74106 * 19 18 17 21 21 C 1.38232 * 119.99891 * 90.00048 * 16 14 10 22 22 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 24 24 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 25 25 H 1.08997 * 115.55170 * 154.32787 * 11 10 9 26 26 H 1.08997 * 117.49954 * 359.97438 * 12 11 10 27 27 H 1.09001 * 117.49185 * 145.02492 * 12 11 10 28 28 H 1.08995 * 117.49972 * 214.98322 * 13 11 10 29 29 H 1.09004 * 117.49702 * 0.02562 * 13 11 10 30 30 H 1.08001 * 119.99606 * 359.97438 * 17 16 14 31 31 H 1.08003 * 119.99686 * 180.22972 * 18 17 16 32 32 H 1.08000 * 120.00109 * 179.72534 * 19 18 17 33 33 H 1.08004 * 120.00038 * 179.97438 * 20 19 18 34 34 H 1.07999 * 120.00065 * 0.02562 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 7 2.2030 -3.6128 0.0028 11 6 2.7573 -4.0999 -1.2628 12 6 2.4649 -3.2829 -2.5230 13 6 1.7732 -4.6305 -2.3073 14 16 2.6525 -4.3208 1.4307 15 8 1.4970 -5.0619 1.7978 16 6 3.7798 -5.5729 0.9146 17 6 3.3161 -6.8410 0.6186 18 6 4.1998 -7.8219 0.2090 19 6 5.5486 -7.5376 0.1056 20 6 6.0130 -6.2709 0.4067 21 6 5.1286 -5.2885 0.8113 22 1 -0.4850 0.8401 0.0004 23 1 0.6281 -2.5552 0.8979 24 1 0.6206 -2.5586 -0.8820 25 1 3.7293 -4.5881 -1.1934 26 1 1.8599 -2.3833 -2.4105 27 1 3.2449 -3.2335 -3.2828 28 1 2.0979 -5.4676 -2.9252 29 1 0.7133 -4.6168 -2.0529 30 1 2.2629 -7.0644 0.7040 31 1 3.8369 -8.8116 -0.0259 32 1 6.2396 -8.3052 -0.2101 33 1 7.0669 -6.0489 0.3264 34 1 5.4916 -4.2991 1.0472 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385402808.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:02 Heat of formation + Delta-G solvation = 0.051827 kcal Electronic energy + Delta-G solvation = -17949.741564 eV Core-core repulsion = 15167.271386 eV Total energy + Delta-G solvation = -2782.470177 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.88038 -38.77790 -36.63441 -35.16869 -33.17420 -31.98414 -31.78588 -28.76026 -25.01611 -23.48792 -23.47210 -23.16105 -21.71886 -19.17616 -18.57020 -18.37733 -17.29279 -16.79698 -16.19310 -15.99412 -15.73182 -15.33410 -14.88305 -14.54271 -14.28216 -13.92380 -13.81036 -13.37260 -13.24282 -12.80920 -12.66530 -12.54107 -12.22988 -12.15849 -12.02848 -11.99247 -11.53169 -11.30149 -11.03759 -10.54863 -10.07568 -9.83664 -9.68129 -8.72899 -8.05740 -6.24125 0.02921 0.49094 1.33133 1.51135 1.52634 1.65596 1.81987 2.50405 2.84744 3.01207 3.20928 3.27555 4.00598 4.07161 4.10806 4.15066 4.16864 4.25220 4.34107 4.59134 4.66959 4.75883 4.91008 5.01762 5.13978 5.16015 5.30472 5.41718 5.45684 5.47723 5.55784 5.68684 5.86645 6.08382 6.20417 6.21576 6.92590 7.47590 8.98997 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.026171 B = 0.006107 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.643625 B = 4583.994139 C = 4615.869288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.247 1.247 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.085 0.915 9 C 0.283 3.717 10 N -0.868 5.868 11 C 0.101 3.899 12 C -0.169 4.169 13 C -0.220 4.220 14 S 1.597 4.403 15 O -0.975 6.975 16 C -0.489 4.489 17 C -0.070 4.070 18 C -0.148 4.148 19 C -0.082 4.082 20 C -0.134 4.134 21 C -0.041 4.041 22 H 0.262 0.738 23 H -0.013 1.013 24 H -0.009 1.009 25 H 0.141 0.859 26 H 0.079 0.921 27 H 0.119 0.881 28 H 0.110 0.890 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.132 0.868 32 H 0.155 0.845 33 H 0.164 0.836 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.154 -9.852 -0.475 19.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.170 1.170 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.103 0.897 9 C 0.158 3.842 10 N -0.699 5.699 11 C -0.008 4.008 12 C -0.208 4.208 13 C -0.260 4.260 14 S 1.705 4.295 15 O -0.960 6.960 16 C -0.586 4.586 17 C -0.090 4.090 18 C -0.167 4.167 19 C -0.100 4.100 20 C -0.152 4.152 21 C -0.061 4.061 22 H 0.071 0.929 23 H 0.005 0.995 24 H 0.009 0.991 25 H 0.158 0.842 26 H 0.097 0.903 27 H 0.138 0.862 28 H 0.128 0.872 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.150 0.850 32 H 0.173 0.827 33 H 0.181 0.819 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 16.578 -9.521 0.468 19.123 hybrid contribution -1.816 -0.765 -1.444 2.443 sum 14.762 -10.286 -0.977 18.019 Atomic orbital electron populations 1.70138 1.08251 1.27824 1.52045 1.25987 0.95485 1.03378 0.94833 0.85345 0.79845 0.78419 0.77095 1.17019 1.21556 1.20919 1.21954 0.94551 0.90205 1.49457 0.89672 1.18375 0.87379 0.84251 0.94168 1.54553 1.56925 1.42512 1.15887 1.21628 0.96526 1.01016 0.81661 1.23165 1.03536 0.94339 0.99808 1.23312 0.97900 0.98655 1.06115 1.68707 0.87310 0.89552 0.83933 1.92794 1.52435 1.72775 1.78017 1.28097 1.08479 1.09068 1.12981 1.20974 0.98843 0.93858 0.95322 1.21425 0.94578 0.99364 1.01376 1.21713 0.94824 0.97932 0.95538 1.21719 1.01387 0.92883 0.99258 1.21335 0.89991 1.01214 0.93516 0.92893 0.99484 0.99133 0.84180 0.90294 0.86238 0.87166 0.92849 0.89568 0.84969 0.82694 0.81892 0.81750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.97 13.29 21.45 0.28 -55.69 16 2 C 0.00 0.05 5.46 84.66 0.46 0.52 16 3 Si 0.97 41.39 29.54 68.60 2.03 43.42 16 4 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 5 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.52 -27.09 8.74 25.60 0.22 -26.86 16 8 H 0.09 4.03 7.81 -2.92 -0.02 4.01 16 9 C 0.28 15.04 4.78 85.63 0.41 15.45 16 10 N -0.87 -37.21 3.06 -497.39 -1.52 -38.73 16 11 C 0.10 3.71 5.93 44.99 0.27 3.98 16 12 C -0.17 -6.23 9.63 30.60 0.29 -5.93 16 13 C -0.22 -8.21 10.12 30.60 0.31 -7.90 16 14 S 1.60 59.12 14.20 -56.49 -0.80 58.32 16 15 O -0.98 -48.86 16.64 -148.98 -2.48 -51.34 16 16 C -0.49 -14.47 3.67 22.27 0.08 -14.39 16 17 C -0.07 -2.23 9.45 22.27 0.21 -2.02 16 18 C -0.15 -3.53 10.05 22.27 0.22 -3.30 16 19 C -0.08 -1.43 10.05 22.27 0.22 -1.21 16 20 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 21 C -0.04 -0.85 9.00 22.27 0.20 -0.65 16 22 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 23 H -0.01 -0.77 7.99 -2.39 -0.02 -0.78 16 24 H -0.01 -0.55 6.56 -2.39 -0.02 -0.57 16 25 H 0.14 4.29 5.94 -2.39 -0.01 4.28 16 26 H 0.08 3.56 6.15 -2.39 -0.01 3.54 16 27 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16 28 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 29 H 0.05 2.35 8.06 -2.38 -0.02 2.33 16 30 H 0.09 3.37 7.30 -2.91 -0.02 3.35 16 31 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 33 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 34 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -76.94 301.60 1.73 -75.22 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 1.09 Total: 13.08 kcal Atomic # 6 Polarization: -47.40 SS G_CDS: 3.13 Total: -44.27 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -1.24 Total: -94.42 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -2.48 Total: -51.34 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: 59.12 SS G_CDS: -0.80 Total: 58.32 kcal Total: -76.94 1.73 -75.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385402808.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.268 kcal (2) G-P(sol) polarization free energy of solvation -76.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds