Wall clock time and date at job start Mon Mar 30 2020 06:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.46502 * 119.99999 * 85.00120 * 10 9 7 12 12 C 1.53006 * 117.49814 * 8.62141 * 11 10 9 13 13 C 1.53004 * 117.49793 * 299.99908 * 11 10 9 14 14 S 1.65593 * 120.00395 * 264.99836 * 10 9 7 15 15 O 1.42103 * 103.00145 * 286.87292 * 14 10 9 16 16 C 1.76197 * 103.00285 * 180.02562 * 14 10 9 17 17 C 1.38234 * 120.00018 * 269.72275 * 16 14 10 18 18 C 1.38238 * 119.99910 * 179.76320 * 17 16 14 19 19 C 1.38238 * 119.99863 * 0.51458 * 18 17 16 20 20 C 1.38236 * 119.99872 * 359.74203 * 19 18 17 21 21 C 1.38232 * 120.00217 * 0.02562 * 20 19 18 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.08997 * 115.55418 * 154.33152 * 11 10 9 26 26 H 1.09006 * 117.49787 * 359.97438 * 12 11 10 27 27 H 1.08994 * 117.49854 * 145.02500 * 12 11 10 28 28 H 1.08998 * 117.49890 * 214.98028 * 13 11 10 29 29 H 1.08995 * 117.49595 * 0.02562 * 13 11 10 30 30 H 1.07998 * 120.00059 * 0.02562 * 17 16 14 31 31 H 1.08001 * 119.99916 * 180.23524 * 18 17 16 32 32 H 1.08001 * 119.99760 * 179.72127 * 19 18 17 33 33 H 1.07998 * 119.99364 * 179.97438 * 20 19 18 34 34 H 1.07993 * 120.00022 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.7629 -4.0976 1.2645 12 6 2.1682 -3.5419 2.5600 13 6 3.5636 -3.1047 2.1095 14 16 2.6460 -4.3233 -1.4280 15 8 1.4887 -5.0651 -1.7885 16 6 3.7744 -5.5754 -0.9147 17 6 5.1246 -5.2935 -0.8230 18 6 6.0094 -6.2744 -0.4156 19 6 5.5452 -7.5402 -0.1101 20 6 4.1957 -7.8235 -0.2070 21 6 3.3104 -6.8413 -0.6098 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 3.0896 -5.1375 1.2657 26 1 1.3606 -2.8151 2.4720 27 1 2.1034 -4.2162 3.4139 28 1 4.4166 -3.4915 2.6670 29 1 3.6732 -2.0907 1.7252 30 1 5.4878 -4.3058 -1.0656 31 1 7.0638 -6.0531 -0.3403 32 1 6.2370 -8.3079 0.2038 33 1 3.8332 -8.8126 0.0313 34 1 2.2561 -7.0628 -0.6858 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385402820.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:04 Heat of formation + Delta-G solvation = 1.690294 kcal Electronic energy + Delta-G solvation = -17986.427567 eV Core-core repulsion = 15204.028439 eV Total energy + Delta-G solvation = -2782.399128 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.87932 -38.75293 -36.63725 -35.09614 -33.14282 -31.97739 -31.79499 -28.78940 -25.02570 -23.51947 -23.47393 -23.02387 -21.70350 -19.17960 -18.64672 -18.31247 -17.24534 -16.74747 -16.18891 -16.04424 -15.69650 -15.18431 -14.93689 -14.61334 -14.27970 -13.89502 -13.76899 -13.34746 -13.24355 -12.92859 -12.66978 -12.58678 -12.14640 -12.06797 -12.00145 -11.76508 -11.50909 -11.27358 -10.98003 -10.53236 -10.07215 -9.84131 -9.74386 -8.66536 -8.05485 -6.23500 0.02896 0.48889 1.33488 1.50288 1.51997 1.64305 1.82591 2.49879 2.85225 3.08602 3.19941 3.26400 3.99824 4.10211 4.12816 4.15492 4.24873 4.31493 4.43127 4.58827 4.66713 4.86256 4.90968 5.08128 5.13632 5.23183 5.32527 5.46054 5.46690 5.55506 5.58663 5.73182 5.87043 6.08354 6.21459 6.23301 6.92491 7.47824 8.99082 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.027195 B = 0.006233 C = 0.006010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.358500 B = 4491.252433 C = 4657.637266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.247 1.247 5 H -0.284 1.284 6 H -0.290 1.290 7 C -0.522 4.522 8 H 0.087 0.913 9 C 0.279 3.721 10 N -0.867 5.867 11 C 0.089 3.911 12 C -0.208 4.208 13 C -0.167 4.167 14 S 1.597 4.403 15 O -0.977 6.977 16 C -0.487 4.487 17 C -0.035 4.035 18 C -0.133 4.133 19 C -0.083 4.083 20 C -0.149 4.149 21 C -0.077 4.077 22 H 0.262 0.738 23 H -0.003 1.003 24 H -0.012 1.012 25 H 0.116 0.884 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.156 0.844 33 H 0.133 0.867 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.177 -9.699 0.410 19.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.170 1.170 5 H -0.210 1.210 6 H -0.216 1.216 7 C -0.561 4.561 8 H 0.105 0.895 9 C 0.154 3.846 10 N -0.698 5.698 11 C -0.020 4.020 12 C -0.247 4.247 13 C -0.207 4.207 14 S 1.704 4.296 15 O -0.962 6.962 16 C -0.584 4.584 17 C -0.054 4.054 18 C -0.152 4.152 19 C -0.101 4.101 20 C -0.168 4.168 21 C -0.097 4.097 22 H 0.071 0.929 23 H 0.015 0.985 24 H 0.006 0.994 25 H 0.133 0.867 26 H 0.088 0.912 27 H 0.121 0.879 28 H 0.133 0.867 29 H 0.114 0.886 30 H 0.180 0.820 31 H 0.180 0.820 32 H 0.173 0.827 33 H 0.151 0.849 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 16.582 -9.385 -0.527 19.061 hybrid contribution -1.727 -0.700 1.469 2.373 sum 14.856 -10.085 0.942 17.980 Atomic orbital electron populations 1.70131 1.08221 1.27774 1.52054 1.25964 0.95468 1.03295 0.94883 0.85389 0.79908 0.78615 0.77064 1.16975 1.20958 1.21629 1.21983 0.94505 0.90217 1.49430 0.89529 1.18466 0.87432 0.84216 0.94466 1.54481 1.56502 1.42975 1.15891 1.21462 1.02053 0.95651 0.82827 1.23146 0.98629 1.04574 0.98391 1.23384 0.93413 1.01036 1.02836 1.68676 0.87115 0.89556 0.84212 1.92789 1.52408 1.72781 1.78193 1.28074 1.08536 1.08993 1.12840 1.21291 0.90031 1.00973 0.93140 1.21714 1.01374 0.92923 0.99171 1.21712 0.94854 0.97915 0.95589 1.21429 0.94552 0.99347 1.01444 1.21008 0.98964 0.93917 0.95853 0.92923 0.98541 0.99426 0.86651 0.91175 0.87893 0.86720 0.88563 0.81990 0.81951 0.82684 0.84886 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.78 13.29 21.45 0.28 -55.49 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.97 41.32 29.54 68.60 2.03 43.34 16 4 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.52 -26.84 8.25 25.60 0.21 -26.63 16 8 H 0.09 4.05 6.85 -2.91 -0.02 4.03 16 9 C 0.28 14.75 5.02 85.63 0.43 15.18 16 10 N -0.87 -37.18 3.08 -497.39 -1.53 -38.71 16 11 C 0.09 3.30 5.94 44.99 0.27 3.56 16 12 C -0.21 -7.84 9.79 30.60 0.30 -7.54 16 13 C -0.17 -5.48 10.10 30.60 0.31 -5.17 16 14 S 1.60 59.39 14.20 -56.49 -0.80 58.58 16 15 O -0.98 -48.94 16.64 -148.98 -2.48 -51.42 16 16 C -0.49 -14.58 3.67 22.27 0.08 -14.49 16 17 C -0.03 -0.74 9.75 22.27 0.22 -0.52 16 18 C -0.13 -2.24 10.05 22.27 0.22 -2.01 16 19 C -0.08 -1.47 10.05 22.27 0.22 -1.24 16 20 C -0.15 -3.55 10.05 22.27 0.22 -3.32 16 21 C -0.08 -2.47 8.70 22.27 0.19 -2.28 16 22 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 23 H 0.00 -0.20 6.07 -2.39 -0.01 -0.21 16 24 H -0.01 -0.73 7.99 -2.39 -0.02 -0.75 16 25 H 0.12 3.99 5.94 -2.39 -0.01 3.97 16 26 H 0.07 3.21 6.13 -2.38 -0.01 3.20 16 27 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 28 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 29 H 0.10 3.55 6.19 -2.39 -0.01 3.53 16 30 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 31 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 32 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 34 H 0.09 3.40 7.30 -2.91 -0.02 3.38 16 Total: -1.00 -75.86 298.17 1.74 -74.12 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 1.10 Total: 13.48 kcal Atomic # 6 Polarization: -47.05 SS G_CDS: 3.14 Total: -43.91 kcal Atomic # 7 Polarization: -92.96 SS G_CDS: -1.25 Total: -94.20 kcal Atomic # 8 Polarization: -48.94 SS G_CDS: -2.48 Total: -51.42 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 16 Polarization: 59.39 SS G_CDS: -0.80 Total: 58.58 kcal Total: -75.86 1.74 -74.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385402820.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.811 kcal (2) G-P(sol) polarization free energy of solvation -75.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds