Wall clock time and date at job start Mon Mar 30 2020 06:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46997 * 2 1 4 4 C 1.47195 * 109.47075 * 239.99936 * 2 1 3 5 5 N 2.60797 * 109.47184 * 239.99876 * 2 1 3 6 6 C 1.53002 * 109.47078 * 119.99601 * 2 1 3 7 7 N 1.46497 * 109.47095 * 295.00217 * 6 2 1 8 8 C 1.38414 * 119.99856 * 179.97438 * 7 6 2 9 9 N 1.32750 * 119.43292 * 359.72591 * 8 7 6 10 10 C 1.31475 * 121.73661 * 179.75058 * 9 8 7 11 11 C 1.40793 * 120.38900 * 0.52550 * 10 9 8 12 12 C 1.41201 * 120.56611 * 179.76836 * 11 10 9 13 13 H 1.08000 * 119.99583 * 335.68448 * 12 11 10 14 14 C 1.39860 * 120.00215 * 155.69056 * 12 11 10 15 15 N 1.30912 * 120.00008 * 343.25517 * 14 12 11 16 16 Si 1.86796 * 120.00370 * 163.25441 * 14 12 11 17 17 H 1.48505 * 109.46714 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.46931 * 119.99636 * 16 14 12 19 19 H 1.48492 * 109.47280 * 240.00128 * 16 14 12 20 20 C 1.41285 * 118.86704 * 359.74415 * 11 10 9 21 21 C 1.36660 * 118.40558 * 359.97438 * 20 11 10 22 22 Cl 1.73601 * 120.26766 * 179.97438 * 21 20 11 23 23 H 1.08998 * 109.47291 * 300.00043 * 1 2 3 24 24 H 1.08998 * 109.47382 * 60.00266 * 1 2 3 25 25 H 1.09003 * 109.46997 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46924 * 55.00038 * 6 2 1 27 27 H 1.09003 * 109.47038 * 174.99831 * 6 2 1 28 28 H 0.96996 * 120.00326 * 0.02562 * 7 6 2 29 29 H 1.07996 * 119.80656 * 180.24570 * 10 9 8 30 30 H 0.96998 * 119.99878 * 180.02562 * 15 14 12 31 31 H 1.08000 * 120.79582 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3994 -1.2295 -2.1294 6 6 2.0400 -0.7212 1.2493 7 7 1.6524 0.0355 2.4424 8 6 2.0048 -0.4255 3.6990 9 7 2.6893 -1.5575 3.8103 10 6 3.0516 -2.0344 4.9807 11 6 2.7090 -1.3532 6.1643 12 6 3.0920 -1.8645 7.4236 13 1 3.2866 -2.9203 7.5411 14 6 3.2190 -1.0038 8.5186 15 7 3.3094 0.2883 8.3286 16 14 3.2598 -1.6978 10.2524 17 1 3.1407 -3.1770 10.1963 18 1 4.5423 -1.3283 10.9034 19 1 2.1283 -1.1400 11.0356 20 6 1.9759 -0.1491 6.0706 21 6 1.6292 0.3060 4.8295 22 17 0.7280 1.7798 4.6581 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6054 -1.7197 1.2952 27 1 3.1264 -0.7994 1.2056 28 1 1.1482 0.8591 2.3518 29 1 3.6113 -2.9563 5.0348 30 1 3.3979 0.8851 9.0880 31 1 1.6970 0.3990 6.9584 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390212475.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:41 Heat of formation + Delta-G solvation = 39.259294 kcal Electronic energy + Delta-G solvation = -16798.461836 eV Core-core repulsion = 13912.107773 eV Total energy + Delta-G solvation = -2886.354064 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.91106 -37.59755 -35.67828 -35.53268 -34.06066 -32.33414 -30.57286 -29.15551 -26.55740 -24.88275 -23.14323 -21.60525 -20.92632 -17.94792 -17.49957 -16.42892 -15.86095 -15.24101 -14.99017 -14.36146 -14.18550 -13.73881 -13.33490 -13.19280 -12.89033 -12.80856 -12.48606 -12.13939 -11.82898 -11.81020 -11.47317 -11.33523 -11.24409 -11.05208 -10.96621 -10.75967 -10.41300 -9.89896 -9.56729 -8.91087 -8.36063 -8.19309 -6.99350 -6.76104 -4.36938 2.45020 2.65130 2.70313 2.75047 3.03618 3.08109 3.11778 3.13922 3.64321 3.86212 4.31057 4.51521 4.73330 4.84970 5.05058 5.47506 5.57346 5.62664 5.88527 5.92315 6.04991 6.09959 6.32748 6.58145 6.87355 7.00972 7.09730 7.46283 7.58339 7.62755 8.00002 8.26706 8.32987 8.61751 8.67587 9.45812 10.07751 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.032280 B = 0.004662 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.207260 B = 6004.747978 C = 6697.086150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.010 4.010 3 H 0.117 0.883 4 C 0.221 3.779 5 N -0.439 5.439 6 C 0.157 3.843 7 N -0.740 5.740 8 C 0.288 3.712 9 N -0.501 5.501 10 C 0.014 3.986 11 C 0.040 3.960 12 C -0.451 4.451 13 H 0.083 0.917 14 C 0.073 3.927 15 N -0.797 5.797 16 Si 0.911 3.089 17 H -0.260 1.260 18 H -0.274 1.274 19 H -0.272 1.272 20 C -0.089 4.089 21 C -0.100 4.100 22 Cl -0.114 7.114 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.398 0.602 29 H 0.135 0.865 30 H 0.282 0.718 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.026 2.837 -5.969 8.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 H 0.135 0.865 4 C -0.098 4.098 5 N -0.114 5.114 6 C 0.030 3.970 7 N -0.382 5.382 8 C 0.054 3.946 9 N -0.217 5.217 10 C -0.144 4.144 11 C 0.034 3.966 12 C -0.482 4.482 13 H 0.102 0.898 14 C -0.145 4.145 15 N -0.423 5.423 16 Si 0.735 3.265 17 H -0.183 1.183 18 H -0.200 1.200 19 H -0.197 1.197 20 C -0.116 4.116 21 C -0.132 4.132 22 Cl -0.086 7.086 23 H 0.098 0.902 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.235 0.765 29 H 0.152 0.848 30 H 0.093 0.907 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.179 1.770 -8.092 9.278 hybrid contribution -0.479 0.969 1.971 2.248 sum -4.658 2.739 -6.121 8.166 Atomic orbital electron populations 1.21821 0.91671 1.03597 1.03170 1.19114 0.97515 0.99592 0.86965 0.86522 1.28931 0.93099 0.93504 0.94239 1.81204 1.08987 1.09342 1.11894 1.20799 0.99657 0.94729 0.81787 1.43586 1.64932 1.28286 1.01394 1.17323 1.01048 0.92446 0.83738 1.66761 1.14424 1.11110 1.29357 1.22358 1.03906 1.01815 0.86358 1.18320 0.92139 0.92040 0.94098 1.19386 1.40551 0.95815 0.92409 0.89845 1.25905 0.92303 0.94510 1.01733 1.69797 1.35019 1.03849 1.33627 0.86212 0.78586 0.80526 0.81178 1.18323 1.19970 1.19705 1.21314 0.97381 0.98210 0.94647 1.20900 1.06506 0.90504 0.95304 1.98242 1.75081 1.37414 1.97909 0.90203 0.91890 0.91494 0.91881 0.92067 0.76543 0.84794 0.90666 0.84222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.02 37.16 0.34 -0.87 16 2 C -0.01 -0.10 2.80 -93.41 -0.26 -0.36 16 3 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 4 C 0.22 2.65 14.65 -20.76 -0.30 2.35 16 5 N -0.44 -6.41 18.54 42.15 0.78 -5.63 16 6 C 0.16 2.13 5.01 -4.04 -0.02 2.11 16 7 N -0.74 -11.75 5.37 -60.32 -0.32 -12.08 16 8 C 0.29 5.94 7.48 -155.04 -1.16 4.78 16 9 N -0.50 -11.08 9.52 -11.75 -0.11 -11.19 16 10 C 0.01 0.33 10.97 -16.74 -0.18 0.15 16 11 C 0.04 0.97 5.59 -106.65 -0.60 0.38 16 12 C -0.45 -11.01 9.07 -37.85 -0.34 -11.36 16 13 H 0.08 1.94 7.90 -52.49 -0.41 1.53 16 14 C 0.07 1.71 5.18 -17.34 -0.09 1.62 16 15 N -0.80 -19.36 10.91 55.54 0.61 -18.75 16 16 Si 0.91 17.59 29.59 -169.99 -5.03 12.56 16 17 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 18 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 19 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 20 C -0.09 -2.12 8.52 -38.99 -0.33 -2.46 16 21 C -0.10 -2.15 6.32 -39.57 -0.25 -2.40 16 22 Cl -0.11 -2.05 27.56 -51.86 -1.43 -3.48 16 23 H 0.08 0.66 7.18 -51.93 -0.37 0.29 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.40 5.55 6.26 -40.82 -0.26 5.29 16 29 H 0.13 2.85 8.06 -52.49 -0.42 2.43 16 30 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 31 H 0.14 3.49 6.20 -52.49 -0.33 3.17 16 LS Contribution 292.01 15.07 4.40 4.40 Total: -1.00 -26.81 292.01 -7.35 -34.17 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -3.04 Total: 6.06 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -3.21 Total: -6.06 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.95 Total: -47.64 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.56 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -1.43 Total: -3.48 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -26.81 -7.35 -34.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390212475.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.425 kcal (2) G-P(sol) polarization free energy of solvation -26.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds