Wall clock time and date at job start Mon Mar 30 2020 06:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46997 * 2 1 4 4 C 1.47195 * 109.47075 * 239.99936 * 2 1 3 5 5 N 2.60797 * 109.47184 * 239.99876 * 2 1 3 6 6 C 1.53002 * 109.47078 * 119.99601 * 2 1 3 7 7 N 1.46497 * 109.47095 * 295.00217 * 6 2 1 8 8 C 1.38414 * 119.99856 * 179.97438 * 7 6 2 9 9 N 1.32750 * 119.43292 * 359.72591 * 8 7 6 10 10 C 1.31475 * 121.73661 * 179.75058 * 9 8 7 11 11 C 1.40793 * 120.38900 * 0.52550 * 10 9 8 12 12 C 1.41201 * 120.56611 * 179.76836 * 11 10 9 13 13 H 1.08000 * 119.99583 * 335.68448 * 12 11 10 14 14 C 1.39860 * 120.00215 * 155.69056 * 12 11 10 15 15 N 1.30912 * 120.00008 * 343.25517 * 14 12 11 16 16 Si 1.86796 * 120.00370 * 163.25441 * 14 12 11 17 17 H 1.48505 * 109.46714 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.46931 * 119.99636 * 16 14 12 19 19 H 1.48492 * 109.47280 * 240.00128 * 16 14 12 20 20 C 1.41285 * 118.86704 * 359.74415 * 11 10 9 21 21 C 1.36660 * 118.40558 * 359.97438 * 20 11 10 22 22 Cl 1.73601 * 120.26766 * 179.97438 * 21 20 11 23 23 H 1.08998 * 109.47291 * 300.00043 * 1 2 3 24 24 H 1.08998 * 109.47382 * 60.00266 * 1 2 3 25 25 H 1.09003 * 109.46997 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46924 * 55.00038 * 6 2 1 27 27 H 1.09003 * 109.47038 * 174.99831 * 6 2 1 28 28 H 0.96996 * 120.00326 * 0.02562 * 7 6 2 29 29 H 1.07996 * 119.80656 * 180.24570 * 10 9 8 30 30 H 0.96998 * 119.99878 * 180.02562 * 15 14 12 31 31 H 1.08000 * 120.79582 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3994 -1.2295 -2.1294 6 6 2.0400 -0.7212 1.2493 7 7 1.6524 0.0355 2.4424 8 6 2.0048 -0.4255 3.6990 9 7 2.6893 -1.5575 3.8103 10 6 3.0516 -2.0344 4.9807 11 6 2.7090 -1.3532 6.1643 12 6 3.0920 -1.8645 7.4236 13 1 3.2866 -2.9203 7.5411 14 6 3.2190 -1.0038 8.5186 15 7 3.3094 0.2883 8.3286 16 14 3.2598 -1.6978 10.2524 17 1 3.1407 -3.1770 10.1963 18 1 4.5423 -1.3283 10.9034 19 1 2.1283 -1.1400 11.0356 20 6 1.9759 -0.1491 6.0706 21 6 1.6292 0.3060 4.8295 22 17 0.7280 1.7798 4.6581 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6054 -1.7197 1.2952 27 1 3.1264 -0.7994 1.2056 28 1 1.1482 0.8591 2.3518 29 1 3.6113 -2.9563 5.0348 30 1 3.3979 0.8851 9.0880 31 1 1.6970 0.3990 6.9584 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390212475.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:40 Heat of formation + Delta-G solvation = 25.158028 kcal Electronic energy + Delta-G solvation = -16799.073313 eV Core-core repulsion = 13912.107773 eV Total energy + Delta-G solvation = -2886.965540 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.54735 -38.70314 -37.23653 -36.86726 -35.63359 -33.63395 -32.32074 -30.75403 -27.72940 -26.41834 -24.44528 -23.25631 -22.45527 -19.27491 -19.12814 -17.71497 -17.45320 -16.67237 -16.22797 -15.93879 -15.57830 -15.07933 -14.77936 -14.43568 -14.10067 -14.02612 -13.75405 -13.57276 -13.41050 -13.14037 -12.85545 -12.66120 -12.60251 -12.45076 -12.16594 -12.00041 -11.85825 -11.54439 -11.22266 -10.50162 -10.09948 -9.92768 -8.69021 -8.41557 -6.16454 0.69707 1.02963 1.45707 1.47193 1.55262 1.59644 1.64588 1.74994 2.25844 2.50572 2.77336 3.15155 3.68427 3.80277 4.00569 4.21179 4.28746 4.55793 4.80669 4.82263 4.88361 4.96786 5.08992 5.14581 5.27445 5.34400 5.35877 5.83186 5.85184 6.34407 6.51184 6.60315 6.80186 6.86153 6.93941 7.76557 8.37083 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.032280 B = 0.004662 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.207260 B = 6004.747978 C = 6697.086150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.005 3.995 3 H 0.147 0.853 4 C 0.244 3.756 5 N -0.484 5.484 6 C 0.157 3.843 7 N -0.724 5.724 8 C 0.297 3.703 9 N -0.511 5.511 10 C 0.007 3.993 11 C 0.011 3.989 12 C -0.483 4.483 13 H 0.084 0.916 14 C 0.036 3.964 15 N -0.830 5.830 16 Si 0.980 3.020 17 H -0.257 1.257 18 H -0.270 1.270 19 H -0.268 1.268 20 C -0.102 4.102 21 C -0.111 4.111 22 Cl -0.081 7.081 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.410 0.590 29 H 0.144 0.856 30 H 0.288 0.712 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.852 3.673 -6.499 9.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.017 4.017 3 H 0.165 0.835 4 C -0.074 4.074 5 N -0.161 5.161 6 C 0.031 3.969 7 N -0.367 5.367 8 C 0.062 3.938 9 N -0.228 5.228 10 C -0.151 4.151 11 C 0.005 3.995 12 C -0.514 4.514 13 H 0.102 0.898 14 C -0.178 4.178 15 N -0.457 5.457 16 Si 0.801 3.199 17 H -0.181 1.181 18 H -0.195 1.195 19 H -0.192 1.192 20 C -0.129 4.129 21 C -0.144 4.144 22 Cl -0.053 7.053 23 H 0.103 0.897 24 H 0.102 0.898 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.249 0.751 29 H 0.161 0.839 30 H 0.099 0.901 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.019 2.619 -8.664 10.349 hybrid contribution -0.284 0.796 1.975 2.148 sum -5.303 3.415 -6.689 9.194 Atomic orbital electron populations 1.21849 0.90077 1.03694 1.04484 1.19121 0.98547 1.00094 0.83906 0.83540 1.29207 0.91796 0.92398 0.93952 1.81237 1.10557 1.10744 1.13535 1.20827 0.99047 0.94675 0.82395 1.43593 1.64009 1.28576 1.00477 1.17627 0.99320 0.91593 0.85303 1.66834 1.15197 1.11910 1.28834 1.22539 1.03991 1.02185 0.86419 1.18582 0.93156 0.92935 0.94806 1.19611 1.42261 0.96152 0.93342 0.89813 1.26655 0.91457 0.94613 1.05124 1.69847 1.36002 1.04936 1.34886 0.85173 0.78615 0.79754 0.76314 1.18061 1.19510 1.19241 1.21260 0.98128 0.98388 0.95171 1.20950 1.06695 0.91894 0.94829 1.98241 1.74090 1.35147 1.97791 0.89664 0.89789 0.92106 0.92780 0.93254 0.75134 0.83879 0.90133 0.85741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.02 71.98 0.65 -1.25 16 2 C 0.00 0.08 2.80 -12.60 -0.04 0.05 16 3 H 0.15 1.67 8.14 -2.39 -0.02 1.65 16 4 C 0.24 5.36 14.65 89.44 1.31 6.67 16 5 N -0.48 -13.57 18.54 20.00 0.37 -13.20 16 6 C 0.16 3.92 5.01 86.38 0.43 4.36 16 7 N -0.72 -21.37 5.37 -344.74 -1.85 -23.22 16 8 C 0.30 11.93 7.48 133.32 1.00 12.92 16 9 N -0.51 -22.44 9.52 -191.07 -1.82 -24.26 16 10 C 0.01 0.31 10.97 85.37 0.94 1.24 16 11 C 0.01 0.55 5.59 -21.18 -0.12 0.43 16 12 C -0.48 -24.16 9.07 23.39 0.21 -23.95 16 13 H 0.08 4.00 7.90 -2.91 -0.02 3.98 16 14 C 0.04 1.70 5.18 85.22 0.44 2.14 16 15 N -0.83 -40.98 10.91 21.82 0.24 -40.74 16 16 Si 0.98 36.23 29.59 68.60 2.03 38.26 16 17 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 18 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 19 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 20 C -0.10 -4.97 8.52 22.65 0.19 -4.78 16 21 C -0.11 -4.70 6.32 22.28 0.14 -4.56 16 22 Cl -0.08 -2.74 27.56 -2.72 -0.07 -2.82 16 23 H 0.08 1.09 7.18 -2.39 -0.02 1.07 16 24 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.41 10.13 6.26 -92.71 -0.58 9.55 16 29 H 0.14 6.21 8.06 -2.91 -0.02 6.18 16 30 H 0.29 12.92 8.30 -92.71 -0.77 12.16 16 31 H 0.12 6.38 6.20 -2.91 -0.02 6.36 16 Total: -1.00 -58.36 292.01 4.65 -53.71 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.59 Total: 19.01 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: 5.16 Total: -6.73 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -3.06 Total: -101.43 kcal Atomic # 14 Polarization: 36.23 SS G_CDS: 2.03 Total: 38.26 kcal Atomic # 17 Polarization: -2.74 SS G_CDS: -0.07 Total: -2.82 kcal Total: -58.36 4.65 -53.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390212475.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.868 kcal (2) G-P(sol) polarization free energy of solvation -58.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds