Wall clock time and date at job start Mon Mar 30 2020 06:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47086 * 2 1 4 4 C 1.47197 * 109.47243 * 120.00477 * 2 1 3 5 5 N 2.60800 * 109.47122 * 120.00323 * 2 1 3 6 6 C 1.53001 * 109.47183 * 240.00230 * 2 1 3 7 7 N 1.46497 * 109.47069 * 64.99752 * 6 2 1 8 8 C 1.38413 * 120.00093 * 180.02562 * 7 6 2 9 9 N 1.32746 * 119.43706 * 359.97438 * 8 7 6 10 10 C 1.31467 * 121.74179 * 180.02562 * 9 8 7 11 11 C 1.40789 * 120.39053 * 0.02562 * 10 9 8 12 12 C 1.41196 * 120.56889 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99504 * 335.70924 * 12 11 10 14 14 C 1.39864 * 120.00116 * 155.70477 * 12 11 10 15 15 N 1.30895 * 120.00342 * 343.25300 * 14 12 11 16 16 Si 1.86802 * 119.99679 * 163.25349 * 14 12 11 17 17 H 1.48500 * 109.47048 * 90.00267 * 16 14 12 18 18 H 1.48497 * 109.47031 * 210.00001 * 16 14 12 19 19 H 1.48500 * 109.47150 * 330.00162 * 16 14 12 20 20 C 1.41291 * 118.86659 * 0.02562 * 11 10 9 21 21 C 1.36657 * 118.40221 * 359.97438 * 20 11 10 22 22 Cl 1.73603 * 120.26281 * 180.27401 * 21 20 11 23 23 H 1.08998 * 109.47327 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47438 * 299.99989 * 1 2 3 25 25 H 1.08997 * 109.47168 * 59.99909 * 1 2 3 26 26 H 1.09001 * 109.47192 * 305.00151 * 6 2 1 27 27 H 1.09000 * 109.47412 * 185.00253 * 6 2 1 28 28 H 0.97007 * 120.00307 * 0.02562 * 7 6 2 29 29 H 1.07997 * 119.80262 * 179.97438 * 10 9 8 30 30 H 0.96999 * 120.00069 * 179.97438 * 15 14 12 31 31 H 1.08005 * 120.79555 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6940 1.2018 5 7 2.3994 -1.2295 2.1294 6 6 2.0400 -0.7212 -1.2493 7 7 1.6524 0.0354 -2.4424 8 6 2.0048 -0.4256 -3.6990 9 7 2.6944 -1.5544 -3.8101 10 6 3.0532 -2.0333 -4.9807 11 6 2.7112 -1.3519 -6.1642 12 6 3.0941 -1.8631 -7.4234 13 1 3.9466 -2.5215 -7.5023 14 6 2.3694 -1.5170 -8.5685 15 7 1.1706 -1.0041 -8.4543 16 14 3.1125 -1.7868 -10.2610 17 1 2.7557 -3.1436 -10.7477 18 1 2.5823 -0.7680 -11.2024 19 1 4.5900 -1.6631 -10.1784 20 6 1.9782 -0.1476 -6.0705 21 6 1.6302 0.3065 -4.8294 22 17 0.7234 1.7770 -4.6585 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.6054 -1.7198 -1.2953 27 1 3.1263 -0.7995 -1.2056 28 1 1.1488 0.8595 -2.3517 29 1 3.6144 -2.9545 -5.0346 30 1 0.6681 -0.7638 -9.2484 31 1 1.6989 0.4003 -6.9583 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390212480.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:42 Heat of formation + Delta-G solvation = 39.296970 kcal Electronic energy + Delta-G solvation = -16801.563779 eV Core-core repulsion = 13915.211349 eV Total energy + Delta-G solvation = -2886.352430 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.90976 -37.59599 -35.67730 -35.53154 -34.06155 -32.33221 -30.57238 -29.15463 -26.55336 -24.88089 -23.14077 -21.60351 -20.92487 -17.94629 -17.49870 -16.42759 -15.85968 -15.21816 -15.01169 -14.36533 -14.18157 -13.72905 -13.33056 -13.19065 -12.89660 -12.83005 -12.42510 -12.16863 -11.83313 -11.78764 -11.48908 -11.33752 -11.22132 -11.03430 -10.98225 -10.74797 -10.44415 -9.91109 -9.55880 -8.90645 -8.35296 -8.19780 -6.99132 -6.76189 -4.36763 2.45428 2.65130 2.70290 2.75829 3.03124 3.05985 3.12266 3.15063 3.64425 3.86099 4.31227 4.51746 4.73637 4.85375 5.05146 5.47636 5.58170 5.63660 5.88713 5.93200 6.04843 6.10751 6.32918 6.58195 6.87407 7.01072 7.09599 7.46286 7.58314 7.62808 8.00009 8.26740 8.32829 8.61796 8.67479 9.46003 10.07766 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.032141 B = 0.004673 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.964705 B = 5990.270178 C = 6686.770210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.010 4.010 3 H 0.117 0.883 4 C 0.221 3.779 5 N -0.439 5.439 6 C 0.157 3.843 7 N -0.740 5.740 8 C 0.287 3.713 9 N -0.501 5.501 10 C 0.014 3.986 11 C 0.040 3.960 12 C -0.451 4.451 13 H 0.083 0.917 14 C 0.074 3.926 15 N -0.797 5.797 16 Si 0.910 3.090 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.260 1.260 20 C -0.089 4.089 21 C -0.100 4.100 22 Cl -0.114 7.114 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.398 0.602 29 H 0.135 0.865 30 H 0.283 0.717 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.126 4.595 6.122 7.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 H 0.135 0.865 4 C -0.098 4.098 5 N -0.114 5.114 6 C 0.030 3.970 7 N -0.382 5.382 8 C 0.054 3.946 9 N -0.216 5.216 10 C -0.145 4.145 11 C 0.035 3.965 12 C -0.482 4.482 13 H 0.101 0.899 14 C -0.144 4.144 15 N -0.423 5.423 16 Si 0.735 3.265 17 H -0.194 1.194 18 H -0.201 1.201 19 H -0.184 1.184 20 C -0.116 4.116 21 C -0.132 4.132 22 Cl -0.086 7.086 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.098 0.902 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.235 0.765 29 H 0.152 0.848 30 H 0.094 0.906 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.520 3.390 8.230 9.030 hybrid contribution -0.452 0.969 -1.970 2.242 sum -1.972 4.359 6.260 7.879 Atomic orbital electron populations 1.21824 0.91655 1.03643 1.03177 1.19114 0.97533 0.99555 0.86959 0.86536 1.28935 0.93092 0.93504 0.94239 1.81204 1.09011 1.09330 1.11891 1.20800 0.99611 0.94774 0.81790 1.43587 1.65071 1.28164 1.01382 1.17321 1.00493 0.93025 0.83744 1.66754 1.14279 1.11254 1.29350 1.22350 1.05627 0.99872 0.86620 1.18311 0.93087 0.91008 0.94141 1.19344 1.12324 1.25988 0.90547 0.89899 1.25898 0.93800 0.92987 1.01725 1.69781 1.08581 1.31612 1.32304 0.86269 0.80632 0.78910 0.80736 1.19449 1.20088 1.18406 1.21312 0.99822 0.95912 0.94534 1.20901 1.06281 0.90760 0.95256 1.98242 1.74893 1.37599 1.97913 0.91472 0.91883 0.90192 0.91877 0.92077 0.76543 0.84800 0.90609 0.84225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.02 37.16 0.34 -0.90 16 2 C -0.01 -0.09 2.80 -93.41 -0.26 -0.36 16 3 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 4 C 0.22 2.65 14.64 -20.76 -0.30 2.35 16 5 N -0.44 -6.40 18.54 42.15 0.78 -5.62 16 6 C 0.16 2.13 5.01 -4.04 -0.02 2.11 16 7 N -0.74 -11.76 5.37 -60.32 -0.32 -12.08 16 8 C 0.29 5.93 7.48 -155.05 -1.16 4.77 16 9 N -0.50 -11.08 9.52 -11.75 -0.11 -11.19 16 10 C 0.01 0.33 10.97 -16.74 -0.18 0.14 16 11 C 0.04 0.99 5.59 -106.65 -0.60 0.39 16 12 C -0.45 -11.03 9.07 -37.85 -0.34 -11.37 16 13 H 0.08 1.92 7.90 -52.49 -0.41 1.51 16 14 C 0.07 1.72 5.18 -17.34 -0.09 1.63 16 15 N -0.80 -19.33 10.91 55.54 0.61 -18.73 16 16 Si 0.91 17.57 29.59 -169.99 -5.03 12.54 16 17 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 18 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 19 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 20 C -0.09 -2.13 8.52 -38.99 -0.33 -2.46 16 21 C -0.10 -2.15 6.32 -39.57 -0.25 -2.40 16 22 Cl -0.11 -2.05 27.56 -51.86 -1.43 -3.48 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.68 7.18 -51.93 -0.37 0.31 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.40 5.55 6.26 -40.82 -0.26 5.30 16 29 H 0.13 2.85 8.06 -52.49 -0.42 2.42 16 30 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 31 H 0.14 3.49 6.20 -52.48 -0.33 3.16 16 LS Contribution 292.01 15.07 4.40 4.40 Total: -1.00 -26.78 292.01 -7.35 -34.13 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -3.04 Total: 6.12 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -3.21 Total: -6.10 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.95 Total: -47.63 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -1.43 Total: -3.48 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -26.78 -7.35 -34.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390212480.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.427 kcal (2) G-P(sol) polarization free energy of solvation -26.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds